Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ----------->GT1         -------->HAHB4                                                             <---------AHL20(2)         --------->ATHB12                                                           --------->AHL20(2)        <---------YAB1                                                            --------->TOE2(3)        --------->ICU4                                                           <---------ICU4  --------->LBD16                                                                --------->ATHB12 --------->ANAC58                   <---------At4g35610                  <----------DOF2  ---------->DOF2 --------->ANAC58              <------MYB46(1)                      ----------->HVH21<---------AHL20(2) ----------->GT1               <------MYB83                     --------->ATHB12 --------->YAB1 ------WRKY18(1)  ---------->DOF2   --------->At4g35610        --------->ICU4   --------->ICU4------- ------>HVH21 ---------->DOF2--------->CCA1(2)                 <---------YAB1   <---------ATHB12   gacccgaaaaatgattaaaagaaaggtcgagataggtgagatgagaaaggttttcaattgaagacatgatttgacctttaaaatcattaaatgaaaggtc  10899700                                                                      <---------AtMYB61                                                                  <---------At4g35610                                                                  <---------ZAT2                                                            --------->ZAT2                                <---------MYB46(3)          <---------ZAT2                                <-----------RAV1(1)         <---------At4g35610              --------                <---------TOE2(3)                           --------->At4g35610             ---------         <------ZmHOX2a(1)    <---------At4g35610          --------->MYB111(2)              ---------       --------->MYB59   --------->ARR14(2)               <--------P  --------->MYB59      --------->LBD16   --------->MYB111(1)   <---------ARR14(2)  --------->DEAR3(2)   --------->ZAT2   <------ZmHOX2a(2) -->ARR11(3)    <---------TOE1(3)<-------GAMYB --------->ANAC46   --------->At4g35610      <---------LBD16   tagagtagttaggaaatgaaggtttcgaatactgctgttggaatgaaaccggccatggaggtagctgcagcttaggtctagctcgatcacttccccggac  10899800          ----------->HVH21         ------->MYC3         <-------MYC3         <-------MYC2         ------->PIF4         ------->MYC2         <-------PIF4         ------->MYC4         <-------MYC4         <-------PIF5         ------->PIF5        --------->ANAC58        --------->ANAC55(2)        ===============================MYC_MYB        <---------ANAC55(2)        --------->ANAC46        --------->ANAC58        --------->bZIP60(2)                                                                        <-        --------->O2                  <-------GAMYB                                              ----        ===============================MYC_MYB                             <-------TEIL          <--- ->LBD16<---------O2           ------->GAMYB                            ----------->GT1          ---- >LBD16 <---------TGA1a       --------->MYB46(3)     ----------->HVH21 <---------TOE2(3)        ----- >ANAC46--------->TGA1a  --------->YAB1   <---------YAB1        <---------LBD16        <---------At5g28300   ttggcattgcacgtgactccctcccaattacaacagtcgctgttgttattcccccatgactccgtcttcggatgaggttcaatgcaatacaccgtgcaat  10899900                                                                                              -------                                                                                              <------                                                                                             ========                                                                                             <-------                                                                                             ========                                                                                             --------                                                                                             --------                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                      --------->LBD16                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                     --------->RAP2.3(3)                                                                                     --------->RAP2.3(2)                                                                                     --------->RAP2.6(2)                                                               ----------->RAV1(1)  --------->ATERF1(1)                                                              --------->ANAC58      <------NtERF2                                                              --------->ANAC58      --------->RRTF1(1)                                                              --------->bZIP60(1)   --------->RAP2.3(1)       <---------ANAC58                                       <---------bZIP60(1)  --------->At4g35610       <---------ANAC58                                      --------->SPL7        <---------ATERF1(1) ---------ID1                                             --------->HSFB2a(2)     --------->ARR14(2) ----->YAB1                                               <---------HSFB2a(2)     <---------ARR14(2) ------ICU4                                       <----------DOF2                <------ZmHOX2a(1) ----->MYB52(1)                                   ------>ZmHOX2a(1)            <---------TOE1(2)  --- ---->ICU4      --------->TOE2(3)           <-------TEIL <---------LBD16  <---------ANAC46   --------   aacgacaaggcttcccaatctcaaactcggttttgaacttgagaagtgcatccttttgttcgggacgacacaagtgcctcgtaggagccgcaagcacgtc  10900000 >PIF5 -PIF5                   ---------->DOF2 ===================================bZIP_DOF                                               --------->AHL20(2) --TGA1a                --------->AHL20(2)                                                 <---------AHL20(2) ===================================bZIP_DOF                                              <---------AHL20(2) ->ANAC58          --------->AHL20(2)                          ---------->DOF2            <---------AHL20(1) ->TGA1a --------->At4g35610                                 <---------HSFB2a(2)          --------->AHL20(2) ------>LBD16   --------->YAB1   ----------->GT1             --------->HSFB2a(2)    <---------At4g35610 ->ANAC58--------->CCA1(2)   ---------->DOF2        <----------DOF2          ------>ZmHOX2a(1)   cgaaaattgagagatgaataagaaaataaaagaaagagtaatacgaatggtactctttgagttccaaaagcctttcatccttcttaagctaatttaattt  10900100                            <---------ANAC55(2)                            <---------ANAC46                            --------->ANAC55(2)                            --------->ANAC58                       -------->HAHB4                       <---------------AtSPL8                      --------->YAB1                    <---------YAB1                              --------->YAB1                <------------CBF                             --------->YAB1           <---------HSFB2a(2)                               --------->ANAC55(2)           --------->HSFB2a(2)                               --------->ANAC46                     <--          <---------LBD16   ----------->GT1                 <-------TEIL                --------->ARR11(3)        --------->ARR11(3)  --------->ANAC58           --------->AHL20(2)               <---------ARR11(3)        --------->GLK1(2)<---------SPL7                <-----------TBP                 --------->YAB1        <---------ARR14(2) <-------TEIL              <----------DOF2          --------->ANAC46  -----     --------->AHL20(2)<---------------AtSPL3    <---------CCA1(2)<---------YAB1    ---------->DOF2   tcttgaataaaatctggaaattgtgatggtacgtaaaatgttttcatgcccatttctttatatacataataatagactctactccacaaagataattcca  10900200                                                                                     <---------CCA1(1)                                       --------->MYB46(3)                            <---------RVE1(1)                                     --------->MYB52(1)                             --------->ARR11(3)          --------->TOE1(2)       --------->ANAC58                                  <---------ARR11(3)      <---------WRKY18(1)   --------->TOE2(3)                                    <------ZmHOX2a(1)  <---------ZAT2            --------->TOE1(3)                                --------->TOE1(2)     --  --------->ZAT2           --------->ANAC46    ---------->DOF2             <-------TEIL           <-- -------ALFIN1    <---------ANAC58--------->ANAC58       <---------ANAC46  ------->TEIL     <-------- ------>RAV1(1)   <---------ANAC58--------->ANAC46   <----------DOF2--------->ARR11(3)    <----------   acacagcttgaccctacgaggcgttcttcacgttaaacgcaacgacttaaaaagtctttacgttgaataagaccatgtacataggagattttttgtgggt  10900300                                                                                                    -                                                                                                   <-                                                                                                  <--                                                                                                -----                                                                                                <xxxx                                                                                              <------                                                                                              =======                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             xxxxxxxx                                                                                             --------                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           ----------                                                                                           ----------                                                                                          xxxxxxxxxxx                             ---------->DOF2                                             xxxxxxxxxxxx                     --------->AHL20(2)                                                  <xxxxxxxxxxx                     <---------AHL20(2)                                                 <xxxxxxxxxxxx                    <---------AHL20(2)                                              <xxxxxxxxxxxxxxxx                    --------->AHL20(2)                                             xxxxxxxxxxxxxxxxxx                 <---------AHL20(1)        <xxxxxxxxxxxxxxxxsmallRNA(s)           <xxxxxxxxxxxxxxxxxx                 --------->AHL20(1)   --------->ATHB12                          <xxxxxxxxxxxxxxxxxxxx                 --------->AHL20(2)--------->At4g35610                     <---------YAB1--------->YAB1 ------->YAB1    <---------AHL20(2)<---------At4g35610              <---------ARR11(3) xxxxxxxxxxxxxx -------YAB1    --------->AHL20(2)--------->MYB52(1)                --------->ARR11(3) <xxxxxxxxxxxxx -ANAC46    <---------AHL20(1) --------->ANAC58                    --------->YAB1xxxxxxxxxxxxxxxxxxxx -RAV1(1)   --------->AHL20(1) --------->ANAC58          <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   atcataagcctaaaaatattaaattaatagacaaagcaactgatttggacttgagaagtatcactggaatgatatttctgatacctgtctctaatgacgt  10900400    ----------->GT1  <---------ANAC46 ----->NtERF2 --------RAP2.6(2) ----NtERF2 ---->ALFIN1 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---ANAC58 ============================bZIP_DOF -->TGA1a -->O2 ---TGA1a -->ANAC55(2) ---O2 ---bZIP60(1) -->bZIP60(1) ---bZIP60(2) ---ANAC55(2) ---ANAC58 ---ANAC46 xxxxxxxxxxxxxxx>smallRNA(l2) --->STF1 xxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxx>smallRNA(i2) ->HVH21     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ->TGA1  --------->ICU4 xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxx>smallRNA(le3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(le3)                              --------->ATHB12 xxxxxxxxxxxsmallRNA(si3)                              --------->AHL20(2) xxxxxxxsmallRNA(le3)                                  --------->ATHB51 xxxx>smallRNA(se3)                                    <---------AHL20(2) xxxxsmallRNA(se3)                                    <---------AHL20(2) xxsmallRNA(fl3)                                   --------->AHL20(1) xx>smallRNA(s)   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->AHL20(2) xxxxxxxxxxxsmallRNA(le3)      <---------LBD16     <---------AHL20(2)                          ------ >smallRNA(se3)   ---------->DOF2                 --------->AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxx   ggcgacttgtaattagtcgaaaaaacgcgtttttgtggaaaatgagagaaaaaaaaattatttgctctcgactatcgctccagtagccgatgctagcatg  10900500                                <---------YAB1                     --------->AHL20(1)                     <---------AHL20(1)                     <---------AHL20(2)                     --------->AHL20(2)                    --------->AHL20(2)                                         ----------->GT1                <---------AHL20(1)                                             --------->YAB1                --------->AHL20(1)                                      <---------YAB1   --------->TOE2(3)                --------->AHL20(2)                                    --------->YAB1   --------->ARR11(3)                <---------AHL20(2)   <-----------------AGL1       --------->ICU4       <---------ARR11(3)         <-----------GT1  <---------AHL20(2)         --------->ZAT6  <---------YAB1   --------->RVE1(1) ----->GT1     --------->AHL20(2)    ----------------->AGL1       <---------YAB1      --------->CCA1(1) xsmallRNA(fl3)<---------AHL20(2)    <-----------------AGL2---------->DOF2    <---------YAB1   taatttcgattttacaaataaattttattttttgatgataccaatactggtcttaccactggaaagagattattatgagtatcataaaaaatctcaaaca  10900600  Previous    Next  AGI:  At3g28890.1    Description:  leucine-rich repeat family protein. similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05650.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G11010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64675.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 10897214    to: 10900078    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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