Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->AHL20(1)                                                                  <---------AHL20(2)                                                                  <---------AHL20(1)                                                                 <---------AHL20(2)                                                                 --------->YAB1                                                                 --------->AHL20(2)            <-----                                                               ----------------------->TaNAC69(2)                                        <---------AHL20(2)   --------->AHL20(1)                ------                                       <---------AHL20(1)    --------->AHL20(2)               -------                                       --------->AHL20(1)    <---------AHL20(2)        <---------ARR14(2)                                    --------->AHL20(2)      <---------AHL20(2)      xxxxxxxxxxxxxxxxx                                   <---------YAB1        <---------AHL20(2)     <----------TaMYB80                                  --------->AHL20(1)     --------->AHL20(2)    ---------->TaMYB80                                  --------->AHL20(2)    --------->AHL20(2)     ------->TEIL   <------ --------ARR11(3)               --------->AHL20(1)  --------->AHL20(1)         --------->ARR14(2) ------->ARR11(3)               --------->AHL20(2)  <---------AHL20(1)     ------->TEIL--------->ARR14(2) ------>CCA1(1)                 <---------AHL20(1)  --------->AHL20(2) <---------------AtSPL3 <------ ---->YAB1                      <---------ARR11(3)  <---------AHL20(2) <---------------AtSPL8-------- ----YAB1                 <-----------GT1 <---------AHL20(2)--------->AHL20(2) <---------ARR14(2) -AHL20(2)             --------->YAB1<---------AHL20(2)<---------YAB1  --------------->AtSPL8<-------   atatctatactattacaaagtttacttataacaaaatattatatatttttaaaatttattaaaaaaattatattttgtacgtatatgcgaattcagatat  10839200                                                                                           <------ZmHOX2a(2)                                                                                          <---------AGP1                                                                                          --------->ARR11(3)                                                                                          --------->ARR14(2)                                                                                          <----------                                                                                          <---------ARR14(2)                                                                                          <---------ARR11(3)                                                                                  --------->LBD16                                                                                 <---------ANAC58                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->ZAT14                                                           <---------ANAC58     --------------->AtSPL8                                                    --------->ALFIN1 ----ARR11(3)                                                                <---------ANAC58      <- --->ARR11(3)                              <-----------GT1                   <---------TGA1a------>ZmHOX2a(2) -->GLK1(1)      --------->AHL20(1)    --------->AHL20(1)                    <---------ANAC58 ------- xxxxx>smallRNA(se3)                   --------->AHL20(2)                   <-------TEIL  --------->GLK1(2) ---RVE1(1)      <---------AHL20(1)    <---------AHL20(2)              <---------ALFIN1  <------ZmHOX2a(1) ---GLK1(1)   --------->YAB1          <---------AHL20(2)              --------->LBD16 <-----------RAV1(2) ->ARR11(3)   --------->AHL20(2)      --------->AHL20(2)      --------->AHL20(2)<---------LBD16  <--- --ARR11(3)  <---------YAB1       --------->AHL20(2) ----------->GT1<---------LBD16 <-----------HVH21   ctaatacattgtactataatatatatcacaaaataagaaaataatttacattgaattgaaaatataaaatcccgcacatacgtgcgggtcaggatctagt  10839300                                                                    <---------YAB1                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                             ----------->GT1                      --------->YAB1                        --------->ATHB12                         <---------YAB1                       <---------AHL20(2)                      <---------ICU4         <-----------HVH21                      <---------------AGL15                    -------->ATHB1        --------->ANAC46                      --------------->AGL15                   --------->AHL20(2)     --------->ANAC58                     ----------------->AG                     --------->ICU4         --------->ANAC58                     <-----------------AGL2               --------->YAB1         --------->ANAC58 -ARR10              <---------ANAC55(2) --------->ARR11(3)   <---------ATHB51   --------->ANAC58 --------YAB1        --------->ANAC55(2)<---------CCA1(2) --------->AHL20(2)--------->ANAC46 ---->GT1            <-----------------AG<---------ARR11(3)   <---------AHL20(2) --------->ANAC46 --------GT1    <---------ICU4      --------->TOE2(3)    <<<<<<<<<ARR2    <-----------GT1   tactattgttttcagaaaacattacttaattgggttaatcttatatctcaacatttacaatcaaattattaaaattctacctcacacaagtcatgggtta  10839400                                           --------->LBD16                                          <---------------AGL15                                          --------------->AGL15                                          --------->HSFB2a(2)                                          <---------HSFB2a(2)                                          --------->HSFC1(1)                                          <---------HSFC1(1)                                         ----------------->AGL3                                         ----------------->AGL2                                         <-----------------AGL2                      --------->ATHB12                <---------ARR14(2)       ----------------->AGL1                    <---------TOE2(3)      ------>MYB83                    ------>ZmHOX2a(1)                           <---------DOF5.7(2)      ------>MYB46(1)             <-----------GT1                                 <-----------GT1      -------->P<---------GLK1(2) <---------ARR14(2)                              --------->MYB52(1)    --------->TOE1(2)         --------->DAG2                                    <---------MYB52(2)    <---------MYB111(1)      ---------->DOF2   ---------->DOF2        --------->ANAC46           ----    <---------MYB59    ---------->DOF2<----------DOF2                <---------LBD16<---------YAB1  ------->TEIL  --------->ARR14(2)--------->ARR14(2)       --------->ICU4     --------->WOX13(1) ----   gaagaacctactagttcatattctcaaaagaaaaagtatcctttccagaaaaagaatgacaaagattaaaacacggagagcaattaacgattgcagacca  10839500                          --------->HSFB2a(2)                          <---------HSFB2a(2)                   <---------AHL20(2)                         <<<<<<<<<GATA-2                  --------->AHL20(1)                          <<<<<<<<<GATA-3                  <---------AHL20(2)                          <<<<<<<<<GATA-1                  --------->AHL20(2)                          <<<<<<<<<GATA-4                  <---------AHL20(1)                        --------->WOX13(1)                  --------->ARR11(3)                      <---------ATHB12                  <---------ARR11(3)                --------->TOE1(3)        ---------->DOF2<---------AHL20(2)           --------->TOE2(3) -->MYB83        --------->AHL20(2)  <---------ANAC58     ------------>CBF -->MYB46(1) >>>>>>>>>>GT-3b         <---------ANAC58  ---------->DOF2            <-------TEIL   <---   aatagaaattgaaagaaaaatatattttatagaaactttgctagtctctagcgaccttaaatcaatccacagttttctcttatattcatctaaatttaga  10839600                                                                     --------->YAB1                                                                 <---------AHL20(2)                  ------------>CBF                            <---------AHL20(1)                <-----------GT1                               --------->AHL20(1)       <---------ARR11(3)                                    --------->AHL20(2)            <---------       --------->ARR11(3)                     *TSS         --------->AHL20(2)--------->AHL20(1)      <---------GLK1(1)                      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)          ---------->DOF2 ------ZAT18----------->TBP            --------->TOE2(3) --------->AHL20(2)  <---------AHL20(1)    --   ccacttagaaatctttataaaccaattctccctcaaacaaaacttaaaaaaaaaaaaaaaaaaatatataaacataaaaaatattaaacaaaaagaacaa  10839700                                                       <---------ANAC46                             <                                    --------------->AGL15                             <---------TOE2(3)                                    <---------------AGL15                       --------------->AGL15                          <------MYB83                --------->MYB59           <---------------AGL15                          <------MYB46(1)         <---------ANAC55(2)           <---------YAB1     --    ----------->GT1      --------->MYB59    <---------YAB1                 <---------MYB46(3) <------ -ID1       <----------DOF2         ============================================================MADS_MADS ------->AHL20(2)   <---------YAB1 <-----------------AGL2    --------->ANAC46  <-----------------AGL1   aaaaaatggcaaaactttcattagcattaggtctattgctactattagcattaagtgaggtctacgaagtgcaagggtcgttcttattgaggcattacat  10839800         --------->HSFB2a(2)         <---------HSFB2a(2)        <---------LBD16   --------->HSFB2a(1)   <---------HSFC1(2)                                                                       ---------   <---------HSFB2a(1)                <---------ANAC58                     <---------At4g35610 ------   --------->HSFC1(2)    <----------DOF2                    <---------ANAC46                --------- ------ZmHOX2a(1) <---------HSFB2a(2) <---------ANAC58      <---------ANAC58                --------- --------->GT1   <-------TEIL ------>NtERF2                 <---------ANAC58              ---------->DOF2 ---ANAC55(2) xxxxxxxxxxxxxxxx>smallRNA(i)                 <-------TEIL    --------->At4g35610 ------   gaggaaatttcccagaaggtccagagactttcggccattcgcttgcagaggtatgttgaagttcgtggacgttttggagcttaagtgtccattaaagcca  10839900      --------->ARR11(3)      <---------ARR11(3)  <---------ARR11(3) >ANAC46                  --------->ARR11(3)                 ----------->GT1 --->RAP2.6(2)       --------->TOE2(2)                   --------->LBD16 >ANAC58          --------->GLK1(1)                    <---------LBD16                    ---------->DOF2 >ANAC58     <---------LBD16                         <---------SPL7           ------>NtERF2 ----->RAV1(1) --------->HSFB2a(2)   ------->TEIL  <------NtERF2     <----------DOF2---------->DOF2   caatacaagagcttcttcggaaacctaaggtcttacatgaacttcataaactcggcatccgggtcgaaaaactttgatgccgagctaaaagggaaagccc  10840000                                         ------>NtERF2                                        --------->DEAR3(1)                                        --------->RAP2.6(2)                                        --------->RRTF1(2)                                        --------->RAP2.3(2)                                       --------->ORA47(2)                                       --------->RAP2.3(1)                                       --------->RRTF1(1)                                       --------->ATERF1(1)                                       <------NtERF2                                       --------->DEAR4(2)                                      ------>NtERF2                                      <---------RAP2.3(1)                                      <---------ATERF1(1)                                      <---------RRTF1(1)                                      <---------ORA47(2)                                     --------->DEAR3(1)                                     <---------DEAR3(1)        <------ZmHOX2a(2)                                     <---------RAP2.3(2)      <---------AGP1                        <---------ATHB12--------->RAP2.3(3)   <---------ARR11(3)                        --------->ICU4<---------DEAR4(2)      --------->AGP1           <------ZmHOX2a(2)                    <---------ZAT14  <---------RAP2.3(3)      --------->ARR11(3)      --------->ARR11(3)           --------->At4g35610      <---------ABI4(2)        <---------CCA1(2)      --------->ICU4           <---------ZAT2         --------->DAG2  --------->DAG2             <---------AHL20(2)           <---------At4g35610  ---------->DOF2  ---------->DOF2------>ZmHOX2a(2) ---------->DOF2  --           --------->ZAT2--------->ATHB12<------NtERF2<-------TEIL        ------->TEIL<---------ARR11(3)   agggcctcttctcagctatgtctgcaatgagtggcaaaggcgccgcatcggtaaagttcatttagatcttaaaatgtatttaagtaaagatcatcgtggt  10840100  Previous    Next  AGI:  At3g28840.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28780.1); contains InterPro domain Protein of unknown function DUF1216 (InterPro:IPR009605) Range:  from: 10839646    to: 10841183    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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