Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <-----------TGA1                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <---------ICU4                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <---------YAB1                             <----------DOF2               <--------                   --------->ICU4                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xx                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->At5g28300                ---------                <------NtERF2                            <-----------HVH21            <---------HSFB2a(2)             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ALFIN1  --------->bZIP60(2) <---------ARR11(3)           --------->ANAC46                        <---------ALFIN1<---------At4g35610------>ZmHOX2a(1)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------ICU4<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <------   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxx   gtcttgctcatctacggcctcattattttcatcaacatttgaaacattatcacacacacggtcactttcagcatcgtcaccatgagtcctagagatatca  10819000                                                                                           <---------WRKY18(1)                                                                                          <---------ZAT14                                                                                        =============                                                                                        <---------TGA1a                                                                                        <---------O2                                                                                        --------->O2                                                                 --------->YAB1         --------->TGA1a                                                            --------->ANAC46          <---------ALFIN1                                                            --------->ANAC58        ==============MYC_MYB               <-------GAMYB                                --------->ANAC58      ------>MYB83              <---------MYB46(3)                        ------>MYB83              -------->P        <---------ANAC58                                ------>MYB46(1)           ------>MYB46(1)     xxxxxxxxxxxxxxxx>smallRNA(i)                      --------->ORA47(1)         ================MYC_MYB  --------->LBD16                                     --------->MYB46(3)       <xxxxxxxxxxxxxxxxxxxxx --------->LBD16                 --------->ANAC58    --------->DEAR3(2)      --------->ARR14(2) -GLK1(1)  ------------>AtMYB77  --------->ANAC58 --------->ARR14(2)         <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <---------ARR14(2)---------->DOF2--------->ANAC46 >GLK1(1) ----------->HVH21 <----------ID1       <------ZmHOX2a(1)  ==============================bZIP_DOF ---YAB1<---------ANAC58  ---------->DOF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------->GAMYB xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxx>smallRNA(i)     ------->TEIL --------->ZAT14   ttcccgagtgtcttgacggttgtaatgaaaaagacaaacaagttgagagaaggataccgaccacgaatcaaaaagaacgtatccaaccccacttgactgt  10819100                                                                                    ------->TEIL                                                      ----------->GT1       ------>ZmHOX2a(2)                                               ------>NtERF2               <---------GLK1(1)               <----------DOF2                --------->ANAC46            --------->ARR11(3)              <---------ANAC58                <---------ETT(1)            <---------ARR11(3)              <---------ANAC58                --------->LBD16          <---------WOX13(1)              <---------ANAC46               --------->HSFB2a(2)     --------->ATHB12           <---------DEAR3(1)            <----------DOF2          --------->ANAC55(2)         <------ZmHOX2a(1)            --------->ARR11(3)          <---------ANAC55(2)          ------      --------->CCA1(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------YAB1<---------ZAT14   x =========================bZIP_DOF    <---------ARR11(3)       --------->ICU4     <---------ZAT18   x xxsmallRNA(se3)            --------->YAB1   <---------HSFB2a(2)<---------ICU4    --------->ZAT14 <xx   caatgtagataggagggcgtttagtatctataatcactaacatctttcccgacatcgagtaactaattatgtgattgatctctgtgtacttcagactgaa  10819200                                                              --------->MYB46(3)                                                          --------->MYB46(3)                                                          <---------MYB52(2)                                --------->TGA2(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              --------->ANAC58          --------->MYB52(1)                <-------TEIL  --------->ANAC46       --------->ANAC58            --------------->AtSPL3                   --------->ANAC46            ------->TEIL     --------->SPL7          --------->ANAC58            --------------->AtSPL8                  <-------TEIL------>MYB83            <---------------AtSPL8 --------->ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ZAT18    ------->TEIL  ------>ZmHOX2a(1)  <---------MYB59         <---------ZAT6 <---------ANAC46  --------->TOE2(3)   --------->AtMYB61        <---------------AtSPL8--------->ANAC55(2)<---------ANAC55(2)        <---------------AtSPL3--------->ANAC58   --------->ANAC58 ---->DOF2<---------ZAT14<---------------AtSPL3  --------->ANAC58<---------ATHB12 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         <<<< xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->TOE1(3)------->GAMYB   <----------DOF2       <xxx xxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)------>MYB46(1)         <-----------GT1   agcctcgcttagtgtacgtacaaattttgtgtacgtcatgttttccttaacacgtacacaacgaccaaacatgtcttcttttggttcaaatttccattct  10819300                                                    ------>MYB46(1)                                                    --------->MYB52(1)                                                    ------>MYB83                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <---------ANAC58*TSS                                  <---------ANAC46<---------MYB59                                  <---------ANAC58--------->MYB46(3)                    ------>NtERF2 <---------ANAC55(2)  ------->GAMYB   <------ZmHOX2a(1)        --------->At4g35610       <---------ANAC55(1)<---------ZAT2   --------->LBD16       ---------        <---------At4g35610       --------->ANAC55(2)--------->ZAT2 <---------LBD16        <xxxxxxxxx       ------->TEIL--------->DEAR3(1)    --------->ARR14(2)    --------->AHL20(2)  <---------AHL20(2)      <---------AtLEC2    ----------->GT1<---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2  <---------ETT(1)      <---------ARR11(3) --------->YAB1        <---------AHL20(2)< <<<<<TBF1  <---------ALFIN1      ----------->GT1--------->ANAC46   <-----------RAV1(2)  ----------->RAV1(1) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-------TEIL xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2)-   tcttctttgcatctccactctccgaccatagtaaatacgtgaatatccattacccaactgcatcataaattcaggagaaactcattaaatgcaacataaa  10819400                                                                                          -----------                                                                                  ------>MYB83       <---------ARR11(3)                                                         <-----------------AG       --------->ARR11(3)                                                         ------>MYB46(1)      <---------CCA1(2)                                                          ----------->RAV1(1)    --------->AHL20(2)                                                          ------->GAMYB   <---------YAB1                                                               --------->AtMYB61  -- >TOE2(3)   ----------->TBP                            <---------AHL20(2)      --------->MYB46(3)  <- xxxxxxxxxxxxxxsmallRNA(fl3)                          --------->AHL20(1)       <---------MYB55(2)  -- ---------YAB1                <---------YAB1          <---------AHL20(1)       <---------MYB52(2)  <- -------->ICU4           <---------GLK1(2) --------->YAB1  <-----------GT1    --------->ANAC46  -----   acatgattatatctacaaaaacaaatagaattttgatatacacacttataaacatatatatttacacatttagcattttcaaccaacaaaattggaaata  10819500                                                           ----------->GT1                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     ------>ZmHOX2a(2)                                                    --------->CCA1(2)                                                    <------ZmHOX2a(2)                                                   --------->AGP1                                                   <---------AGP1                                                   --------->ARR14(3)                                                   --------->ARR14(2)                                                   <---------ARR14(2) >GT1 <---------LBD16                              <-----------ARR10       --------->GLK1(2) ------->AHL20(2)                                  <---------ARR11(3)      <---------ARR11(3) --------AHL20(1)                                  <---------ARR14(3)      --------->ARR11(3) ------->AHL20(1)                                  --------->ARR11(3)--------->ANAC58             --- --------AHL20(2)                              --------->YAB1        --------->ANAC58             --- ---->YAB1                ---------->DOF2     <---------ATHB12       ----------->GT1              ---   ataaattttgggggttttctatagaaaacaaagttgatttcgaacacaatgaagatctagtgtgttataacaagaaaaatctttaaacttcagtacttac  10819600                                                                           --------->AHL20(2)                                                                           <---------AHL20(2)                                                                          <---------ATHB12                                                                          --------->ICU4                                                                     --------->ANAC58         --------->ARR11(3)                                          --------->ANAC58   --------->LBD16        <---------CCA1(2)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------YAB1                          --------->ZAT6          <-------TEIL        ------>ZmHOX2a(1)    --------->ICU4                          <---------ALFIN1    ------->TEIL      --------->MYB52(2)   <---------TOE2(3)                    <------ZmHOX2a(2)       <-------TEIL <---------TOE2(3)    <-- ------>ANAC58                         <---------ARR11(3)   <---------------AtSPL3<---------MYB46(3) ------>ANAC46                         --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   --- ------>ANAC58                 --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <-------TEIL   acgataatgtttatcttggctccaaacttctaaataaacaagatcaacacttcttgagcatcaatgtacgttcgcaattaatgtttgttcctgagttcat  10819700                                                                                                    -                                                                                                 <xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                                <xxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                        <---------DAG2                                                                                        <----------DOF2                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                               --------->ANAC58 xxxxx                                                                               --------->ANAC58 xxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <---------ANAC46 xxxxx                                                                               ====================bZIP_DOF                                                          <---------AtLEC2     <xxxxxxxxxxxxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------O2<xxxxxxxxx                                   --------->YAB1 --------->ICU4           <-----------HVH21 xxxxxxxx                                  <---------YAB1-------->HAHB4     <---------YAB1  xxxxxxxxxxxxxxxx>smallRNA(i)                                 --------->AHL20(2) --------->ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <---------AHL20(2)    --------->YAB1   <---------ICU4<---------ANAC55(2) <x                         <---------AHL20(2)     <---------ICU4   -------->HAHB4<---------TGA1a  xxxxx                      --------->AHL20(2)  <---------ANAC55(2)    --------->YAB1--------->O2xxxxxxxxxx                     <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i)                     --------->AHL20(2)   --------->ANAC55(2) --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(i)                 <---------YAB1<---------AHL20(2) <---------YAB1<---------ATHB51<xxxxxxxxxxxxxxxxxxxx           --------->ICU4--------->AHL20(2)    <---------ATHB12 --------->ICU4xxxxxxxxxxxxxxxxxxxxxxx --------DOF2 <---------YAB1  --------->YAB1   --------->ICU4--------->ICU4<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>TOE2(3)--------->YAB1<---------YAB1    <---------YAB1--------->AHL20(2)--------->TGA1a  xxxxx   ctttaactcaacacttattataaataattttataatattataacatgtaatgatgattttgcattaattatgacaagagtcacgtctaaactttttgggc  10819800           <-----------HVH21          --------->bZIP60(1)          <---------bZIP60(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------AHL20(2) -------->AHL20(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(le3) xxxxxxxx>smallRNA(s2) xxxxxxxx>smallRNA(le3) xxxx>smallRNA(si3) xxxxxxx>smallRNA(si3) xxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(se3) x>smallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(si3)        <-----------ARR10 xxxxxxxxxxxxxxx>smallRNA(le3)     --------->ARR11(3)                                             --- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <---- xxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------ARR11(3)     ------>NtERF2                    <---------MYB52(2) xxxxxxxxxxxxx>smallRNA(le3)--------->YAB1                --------->LBD16          --------->ARR11(3) xsmallRNA(se3)             ----------->GT1              --------->DEAR3(1)        <---------ARR11(3) >smallRNA(le3)         <---------AHL20(2)      --------->ZAT6                    --------->CCA1(1) xxxxxxxxxxxxxxxxx>smallRNA(l2)   --------->RVE1(1) ---------->DOF2               --------->RVE1(1)   cattaaatgttgatgtcacttcgtttttaatggtaaaaatctcccttctaactgtatagccgcgcttctcaacgtgaaacaaaaatatctccaactaaac  10819900  Previous    Next  AGI:  At3g28800.1    Description:  transposable element gene. Mutator-like transposase family, has a 2.5e-23 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 10818290    to: 10819350    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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