Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <------MYB46(1)                                    <------MYB83                     --------->YAB1          --------    <---------ICU4          --------->YAB1   ----------->GT1        <---------YAB1   <---------MYB52(1) ------AHL20(2)          <----------DOF2    <---------TOE1(3)     <---------------AGL15 <------MYB83 >At5g28300        ---------->DOF2 --------->MYB59                --------------->AGL15 <------MYB46(1) ->GT1 <<<<<<<<<<<<<<<<<LFY<---------YAB1   <---------TOE2(3)    <---------YAB1 <-----------GT1   ttatagtcattacattggataaaaagactttgatagtttggtttttgaggttaatacaacatgtactactattatgagcttgtttccatttggtaatgtt  10785700                               <-------GAMYB                               <---------ANAC58                               <---------ANAC58                              <---------MYB46(3)                              <------MYB46(1)                             --------->MYB59                             <---------AtMYB61                           <---------MYB52(1)                       ------>ZmHOX2a(1)                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                                                 <---------ICU4                   <---------GLK1(2)                    --------->REM1(1)          <---------ICU4                   <---------ARR14(2)    <---------AHL20(2)                        --------->YAB1                   --------->ARR14(2)    --------->AHL20(2)                  ------>ZmHOX2a(1)      -                 ----------->ARR10      --------->AHL20(2)         ------>ZmHOX2a(1)  <-----------GT1 ->ICU4        <---------LBD16<------MYB83    <---------YAB1      <---------YAB1  <---------ATHB12  -   gaacaatagagacaatgctcggatcctctgtttggttgtctatttattttgaatagctccatcacattcctattgtctccttcaataatcacttctccat  10785800                                                                     --------->ANAC46                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                  ------->TEIL                                                                  --------->ARR14(2)                                                        <------MYB46(1)                                                        ----------->GT1                                                       --------->MYB46(2)                                                       --------->MYB59                                                     <---------MYB52(1)                                                 ----------------->AGL1                                                <-----------------AGL1--------->LBD16       <--------                          ---------->DOF2      <---------ARR14(2) <---------ARR14(2)       --------->AHL20(2)             <-----------GT1--------->ANAC58   --------->MYB52(1)------>MYB46(1)  --------->ATHB51         <---------MYB52(1) --------->ANAC58   <-----------GT1   ------>MYB83     --------->ATHB12 -------->TOE2(3)       --------->MYB46(3)    ----------->HVH21<---------MYB59   <---------YAB1------ -------->TOE1(3)    ------>ZmHOX2a(1)--------->MYB52(1)<------MYB83<---------LBD16 <---------WOX13(1)   acccttagaccggttttcccctcctaaccaaagccaaacaaaaccgaagtaaccggtttggtaaaccgaacccgcatgcctacataattgatataaaatt  10785900                                                                                              -------                                                                                              <------                                                                                 <---------ARR11(3)                                                                                 --------->ARR11(3)                                                                             ---------->DOF2  -------                         ----------->GT1                                 <---------YAB1  <-----------                    ----------------->AGL1                          <---------MYB52(1)  <-----------GT1 -AHL20(2)          ----------------->AG                        <---------At5g28300 <----------DOF2 --->GLK1(2)    <----------DOF2                                <-----------GT1--------->DAG2 <-------   ctgttttataagaggtttcttttccaaatgtgaaaaaatccaaaactcaaaacaaccttctgtttttaccgttttttgataaaggtctttttcccaaatc  10786000                                    <-----------ARR10                                    --------->ARR11(3)                                    <---------ARR11(3)                        ----------->RAV1(2)                                    --------->GLK1(2)                       ------->GAMYB -->ARR14(2)                   ----------->GT1                              --------->DEAR3(1) ---ARR14(2)                   --------->LBD16                             --------->MYB46(3) -->GLK1(2)                  <---------LBD16                             <-----------GT1 ------AGL1              --------->AHL20(2)             <<<<<<<<<MYB2   ---------->DOF2 --CCA1(2)            --------->WOX13(1)           <------------CBF    --------->AHL20(2)       -----   tgcaaaaccaaaaactcaaaaattcaattaaaccggaaaatctaattttcgaaaattggttttcttcccaaaattaaaccgcctgagtgtctatgtataa  10786100                                                                                                   <-                                                                                                   <-                                                                                              -------                                                                                              -------                                                                                             ------>NtERF2                                                                  <---------TGA1a            <-------                                                                  <---------ANAC58           <------NtERF2                                                                  <---------ANAC58          ---------                                                                  --------->O2             <---------RAP2.6(2)                                                                  <---------O2 ------->GAMYB<--------                                                                  --------->TGA1a          <---------ANAC46                                                    ========================bZIP_DOF       <---------ANAC58                             <-----------GT1        <----------DOF2   <---------CCA1(2)    <---------ANAC58       --------->YAB1     *TSS          <----------DOF2    <---------CCA1(2)----------->RAV1(1) <----      <---------YAB1    --------->AHL20(2)          <---------DAG2=====================MYC_MYB------- ----->DOF2    ----------->GT1          ====================================bZIP_DOF     <-----------   aagttgatatcatagtttggaaaaaaaaaaatcactctctctctttcgctctcgctttctcgtctctctcgtgtctctcaacagaaaaccatggcggacg  10786200                                       --------------->AtSPL3                                       --------------->AtSPL8                                       <---------------AtSPL8                    ------>ZmHOX2a(2)                                       <---------------AtSPL3                   <------ZmHOX2a(2)     ------>ZmHOX2a(1)                 --------->DAG2                          --------->AGP1 <---------ALFIN1              <---------DEAR3(1)                              --------->ARR14(3) --------ALFIN1             --------->ATERF1(1)                                --------->ARR14(2) --------ATERF1(1)      <---------At4g35610                                    <---------ARR14(2) -->RAP2.6(3) <---------ARR11(3)  --------->ALFIN1                             <---------AGP1 -->ATERF1(1) --------->ARR11(3) --------->At5g28300                           <---------ARR14(3) --ATERF1(1) --------->RVE1(1) <------NtERF2                                   <---------ARR11(3) -->HVH21  --------->AHL20(2) <------NtERF2                                    --------->ARR11(3) -SPL7     --------->YAB1  <-----------HVH21                        <---------CCA1(2)          ------ -----ATERF1(1)         --------->At4g35610                      ------>ZmHOX2a(1)<----------DOF2 -->SPL7  <---------ATHB12<---------MYB46(3)                     ======================HOX2a_HOX2a -------SPL14--------->CCA1(1)<---------LBD16                    =======================HOX2a_HOX2a   gccactccttcaataatatctctctcagcggtcgcggtggaaaggtaccatcttctctctctgtctccttctatctctcaagatctttcaattccttcaa  10786300                                                                --------->RAP2.3(1)                                                               ------>NtERF2                                                               <---------At4g35610                                                          <---------ANAC58                                                          <---------ANAC58                                                     <---------DAG2          ---------->DOF2             ------>ZmHOX2a(1)                      <---------DAG2        --------->TOE2(3)       <---------DAG2                          <---------ARR14(2) ------>NtERF2       <----------DOF2                <----------DOF2<----------DOF2   <---------GLK1(2)      <---------DAG2        --------->TOE1(3)  --------->ARR14(2)--------->DEAR3(1)     <---------ATHB12   <-----------GT1    --------->HSFB2a(2)      ------->TEIL   --------->ANAC46   --------->ARR11(3) ---->DOF2---------->ID1    --------->TOE2(3) <---------CCA1(2)--------->LBD16   <---------ARR11(3)   agttttcaccttttcctcttccttcgaaaaccctaatctcctttctctgtatccccttttgcttccgccgctcgattcttaaagaactcaatgagtcaaa  10786400                                                                           --------->MYB52(2)                                                                          <--------P               <---------GLK1(2)                                         <---------MYB52(1)           ---------->DOF2                      <---------ANAC58   <---------ZAT2  <---------TOE2(3)  ----------->GT1                   <---------MYB52(1)             <---------At4g35610  <---------ZAT6                   <---------At4g35610  <---------YAB1<---------LBD16         <------ <---------TOE1(3)     <----------DOF2 <-----------RAV1(1)         --------->At4g35610        <------ <---------TOE2(3) ---------->ID1  <-------GAMYB<---------ANAC58---------->DOF2    <---------TOE1(3)   tttagggttaaaaaaaagattgtcgctttcatttttcagttgtgttgttttcttgtttacaattgttaaagctgcggtagtttttagggttttcttaagg  10786500                                                                                              -------                                                                                         --------->GLK1(2)                                                                                        --------->DAG2                                                                                       ---------->DOF2                                                            --------->GLK1(1)      <---------ANAC46    <---------TOE2(3)           --------->LBD16           <------ZmHOX2a(1)      <---------MYB46(3)    <---------TOE1(3)         <---------LBD16        <---------HSFB2a(2)        --------->ALFIN1 ---TOE1(3)             <---------HSFB2a(2)          --------->HSFB2a(2)        <---------DEAR3(1) ---TOE2(3)             --------->HSFB2a(2)         <---------LBD16             <---------AtMYB61   ctaattagggtttcaattttggttttttagaacccgggtttacttaaaatcaattctggaggaattcaatggaagaaacaaggtggtggaaaagctgtgg  10786600  Previous    Next  AGI:  At3g28720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58100.1); similar to hypothetical protein OsI_022695 [Oryza sativa (indica cultivar-group)] (GB:EAZ01463.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79924.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14910.1) Range:  from: 10783513    to: 10785684    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g28730.1    Description:  ATHMG (HIGH MOBILITY GROUP); transcription factor. Identical to FACT complex subunit SSRP1 (SSRP1) [Arabidopsis Thaliana] (GB:Q05153;GB:Q9LHA2); similar to high mobility group (HMG1/2) family protein [Arabidopsis thaliana] (TAIR:AT4G23800.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79926.1); similar to FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) (GB:O04235); similar to unnamed protein product [Vitis vinifera] (GB:CAO14908.1); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domai Range:  from: 10786126    to: 10789966    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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