Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------AHL20(2)                                                                          --------->AHL20(2)                                                                       <---------ICU4                                                                       --------->ATHB51 ----AHL20(2)                                                         --------->AHL20(2) --->AHL20(2)                                               --------->AHL20(2) ----YAB1                                <----------ID1   ----------->GT1 <---------AHL20(2) -AtSPL8                           ------->TEIL          --------->DAG2--------->YAB1               - >AtSPL3                   <-----------GT1              ---------->DOF2<--------HAHB4     --------->ARR11(3) >AtSPL8                --------->AHL20(2)       --------->TOE2(3)    --------->ICU4      --------->AHL20(1)   attcatactaaacaatatttgaacatttaaaaccatgtatatgaagacaaaacttaaaaaaagtaaatttgaataattaaatattggaaacatatattgg  10783100                                       <------NtERF2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          --------->TOE1(3)            --------->ATERF1(1)          --------->YAB1              <-----------HVH21                                   <----------DOF2          --------->TOE2(3)           <---------ATERF1(1)                     --------->AtMYB61      <---------AHL20(2)             <---------ANAC58                         ------->GAMYB      --------->AHL20(2)             <---------ANAC58                        <---------MYB55(2)   <--------HAHB4              <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->MYB46(3)   <---------ICU4              <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)             -------->P    <---------DAG2  <---------YAB1           <-----------HVH21                         <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->ICU4       --------->MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(i)    --------->MYB46(3) -------->YAB1 <---------At4g35610   <---------DEAR3(1)            ------>NtERF2 --------->AtMYB61   aagcataattaatcttaagcggtcgaaacggtcatctaggcgtcgcatgagagcctagcccctagtcgaggcctaaacaaccaccaaaatcgctttttag  10783200                                                                                       --------->LBD16                                                                                      --------->ANAC46                                                                                      --------->RAP2.6(2)                                                                                      --------->ANAC58                                 <------------CBF                                    --------->MYB46(3)                               --------->AHL20(2)                             <---------YAB1                               <---------AHL20(2)                        --------->ATHB12                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <------------CBF--------->ANAC58                            --------->ATHB12                          <---------ARR14(2)         ----                 <---------AHL20(2)                     --------->ZAT14 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->AHL20(2)<---------WOX13(1)        --------->ZAT18 --------->ICU4------->GAMYB        <---------TOE2(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->LBD16 <---------At5g28300     <---------WOX13(1)    --------->ICU4               <---------ZAT14<---------WOX13(1)----------->RAV1(1)   --------->ATHB12      <------------CBF           --------->DAG2 <---------ANAC46<-----------GT1 --  <---------YAB1<---------AHL20(2)              --------->YAB1<---------GLK1(2)<---------ZAT6 <------  --------->ICU4--------->AHL20(2)      -------->P ---------->DOF2<---------LBD16 <xxxxxxxxxxxxxxxxxx   aatactgattgagataaattaaatctgtattgatttattgtctacccctaaaataaagtagactgaatcgcggattgattagtattaaccgcaacatcca  10783300                                             --------->YAB1                                             <---------ICU4                                             <--------HAHB4                                            --------->ICU4                                       --------->ANAC58                                       --------->ANAC55(2)                                       --------->ANAC58                                       --------->ANAC46           <---------ETT(2)          <---------DOF5.7(2)     --------->TOE2(2)             --------->DOF5.7(2) ----->AtLEC2                  ------->GAMYB<---------YAB1                <-----------RAV1(1) ------->YAB1                 --------->MYB46(3)                --------->YAB1 -TEIL    <xxxxxxxxxxxxxxxxsmallRNA(i)<---------TOE1(3)    --------->AHL20(2) xxxsmallRNA(si3)  --------->YAB1 <----------DOF2          <---------AHL20(2)   <---------ANAC46  <--   ttcaaaacctcggtcgataattcataacttcaaccgcgttcacgttatcattacccaaattttaaatgatagttttttgttggagtgaaacccctaaatt  10783400                                                                     --------->ARR11(3)  ------------>CBF                                                   <---------ARR14(2) ------->GAMYB                  ------------>CBF                     <---------ARR11(3)             < --------->TOE2(3)             --------->TOE2(3)                     <-----------ARR10          ----- >>>>>>>>>>>>>>>>>LFY          ------->GAMYB   <-----------GT1       --------->ARR14(2)    ------>ZmHOX2a(1) ---------GT1                -------->P<-----------GT1  ---------->DOF2                 ------>ZmHOX2a(1)   taaccccaatgtgaaaaatccacttaaatctaaccccaatttgacatttttagccctcgaaagcccaaacaaatcttcgtcttcgtcttcctcctctaac  10783500                                                      ------>NtERF2                                                 =========================HOX2a_HOX2a                                                 ===============================HOX2a_HOX2a                                                 ------>ZmHOX2a(2)                                                 ============================HOX2a_HOX2a                                                 --------->ATERF1(1)                                                <---------ATERF1(1)                                                <------ZmHOX2a(2)                                                ==========================HOX2a_HOX2a                                                =============================HOX2a_HOX2a                                                =======================HOX2a_HOX2a                                                ================================HOX2a_HOX2a                  <---------ALFIN1             --------->ARR14(2)                  --------->DEAR3(1)           <---------ARR14(2)                  --------->AtMYB61            <-----------ARR10                 --------->MYB46(3)           --------->ATERF1(1)             --------->ANAC58               <---------ANAC58                          <---------ALFIN1             --------->ANAC58               <---------ANAC58                       <---------ALFIN1          ----------->HVH21       ------>MYB46(1)======================HOX2a_HOX2a --------->ANAC46        <---------O2 --------->DEAR3(1)     <---------ANAC46                 <---------ICU4        --------->ANAC55(2)       ------>MYB83<------NtERF2                  --------->YAB1        --------->TGA1a         <---------MYB111(2)  --------->DEAR3(1)  ------>ZmHOX2a(1)        --------->O2--------->ANAC46       <---------LBD16         ------>ZmHOX2a(1)  --------->AtMYB61        <---------TGA1a         <---------MYB111(1)<---------ATERF1(1)------>ZmHOX2a(1)      ------>ZmHOX2a(1) ---------ALFIN1------->TEIL <---------ALFIN1<---------MYB46(3)   <---------ALFIN1 --------->AtMYB61 ---->MYB46(3) --------->ANAC46 <---------MYB46(2) ------>NtERF2------>ZmHOX2a(1) --------->MYB46(3)   ctccactctcacatgacgcaccaccgcatcaccacctacttcaatggcggatccgcctccatcttcctcctcctcctactcatcaccaccacttcctctt  10783600                                                                                            ------>ZmHOX2a(1)                                 <---------MYB52(2)                                         =========                                 --------->MYB46(3)                                         =========        ------>MYB83            >>>>>>>>>MYB98                                           ============        ------>MYB46(1)       ------>ZmHOX2a(1)           <---------ARR11(3)             ------>ZmHOX2a(1)      --------->MYB46(3)     <---------MYB59    --------->HSFB2a(2)                      ============      --------->AtMYB61    ------>MYB46(1)--------->ARR11(3)                    --------->ZAT14      <---------ALFIN1     ------>MYB83   <---------ARR11(3)--------->YAB1    --------->ANAC46   cttctccaccaatcccaggcctagacaccttcctaacaaaccaatatcgtctcgacccaaaatcatcaaacgactcattcacatcactctcctcctctct  10783700              XXXXXXXXXXXXXXXXXXXX>MIR3440B-5P     ------>ZmHOX2a(2)    <------ZmHOX2a(2)   --------->ARR11(3)   <---------ARR11(3)--------->WOX13(1)                                     --------->ANAC58 ==========HOX2a_HOX2a <<<<<<<<<GATA-3                                      --------->ANAC58 ===========HOX2a_HOX2a<<<<<<<<<GATA-1               ------>ZmHOX2a(1)      --------->ANAC46<-------- ===========HOX2a_HOX2a<<<<<<<<<GATA-4       <-----------ARR10    --------->YAB1       <---------MYB52(1) ==========HOX2a_HOX2a <<<<<<<<<GATA-2      <---------CCA1(2)     --------->TOE2(3) <-------TEIL   --   caaacgatctctctcttcttcatcaatccacttctcatcactctccaaatctctcctctctctctcaatctcaatcccactcaacgtccgtttcatcgga  10783800                                                         --------->MYB52(1)                                                       <---------MYB111(1)                                                       --------->MYB46(3)                       <---------ALFIN1                <---------MYB52(2)                     ------>NtERF2                     <---------MYB46(2)                    --------->DEAR3(1)             --------->At5g28300                   --------->ATERF1(1)            --------->RAP2.3(2)                   <------NtERF2                  --------->RAP2.6(2)                   --------->RAP2.3(1)           <------NtERF2                  <---------ATERF1(1)            --------->RAP2.3(1)                  --------->ABI4(1)             --------->ABI4(1)                  ------>NtERF2                 ------>NtERF2                 --------->DEAR3(1)             <---------ATERF1(1)                 --------->RAP2.3(2)           --------->RRTF1(2)                 <---------ALFIN1              --------->DREB2C(2)                 --------->RRTF1(2)            --------->RAP2.3(3)                 --------->RRTF1(3)            --------->RAP2.6(2)                 --------->DREB2C(2)           --------->RAP2.3(2)                 --------->RAP2.3(3)           <---------DEAR3(1)                 --------->ATERF1(2)           --------->RRTF1(3)                 --------->RAP2.6(2)           --------->ATERF1(2)                --------->RAP2.3(1)            --------->DEAR3(1)                --------->ERF1                --------->RRTF1(1)                --------->DEAR4(2)            --------->DEAR4(2)                --------->ATERF1(1)           --------->ATERF1(1)                --------->RRTF1(1)            --------->RAP2.6(1)                --------->ORA47(2)            --------->ERF1               --------->ABI4(1)              --------->RAP2.3(1)               ------>NtERF2                  --------->ORA47(2)               --------->LBD16               --------->LBD16               --------->At4g35610           <---------At4g35610               <---------At4g35610           --------->At4g35610               <---------ATERF1(1)           --------->ABI4(1)              --------->DEAR3(1)             <---------ATERF1(1)              --------->ANAC46               ------>NtERF2                                          -              <---------ALFIN1              --------->DEAR3(1)                               <-------TEIL  <----------DOF2<---------ATERF1(2)        --------->ANAC46                               <---------GLK1(2) -At4g35610 ------>ZmHOX2a(1)              <---------LBD16                                 --------->ARR14(2) ------->GLK1(2)--------->RAP2.6(1)     <---------At4g35610                                <---------ARR14(2)   gactctttcccttcctccgccgcctccactctctccgaattcatctccgccgccgtaactaacgacaacttccatgtaatctctccatctccagattcat  10783900                                                                     --------->ANAC46         -------               <---------MYB52(1)    ----------->HVH21              ----------->RAV1(1)       ------- -------->MYB46(3)              <---------ALFIN1                   --------->ANAC46  <----------DOF2   caacaaatcacaaactcgttatctctcactctctccaccttgacgcttctctatctccccaatctctctccaccagactcgattcaactttgaaaaccct  10784000  Previous    Next  AGI:  At3g28720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58100.1); similar to hypothetical protein OsI_022695 [Oryza sativa (indica cultivar-group)] (GB:EAZ01463.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79924.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14910.1) Range:  from: 10783513    to: 10785684    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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