Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->At4g35610   --------->ANAC58   --------->ANAC58  --------->YAB1 --------->ICU4 ------>GT1 >ARR14(3) >AGP1 <---------At4g35610 -AGP1--------->GLK1(2) -ARR14(2)                <----------DOF2       --------->ATHB12    <---------TOE2(3) >ARR14(2)                ------>ZmHOX2a(1)    <---------YAB1    <---------ATHB12 -ARR14(3)             <------ZmHOX2a(2)<---------GLK1(2)  --------->AtLEC2 >ARR11(3)    --------->KAN4(2)   --------->ANAC58         ------>ZmHOX2a(1) -ARR11(3)   <---------KAN4(1)    --------->ANAC58     --------->ARR11(3)   ---------->DOF2    ------   gtaataagcatctgaatgttcttcgatcctttgagcaagacataatctcttgattaagttcctgcaaatcaaggtttctaaagacacaaatcgaaaacat  10760300           --------->YAB1          <---------ATHB12         --------->ANAC58                          <---------YAB1         --------->ANAC58                 ------>ZmHOX2a(2)        --------->WOX13(1)               <------ZmHOX2a(2)     --------->ANAC58                   --------->ARR11(3)     --------->ANAC58                   <---------ARR11(3)                    --------->DAG2 --------->YAB1                         --------->AGP1                       ---------->DOF2 --------->TOE1(3)                     --------->GLK1(1)                   --------->ARR11(3) <------ --------->TOE2(3)                <---------At4g35610                  ---------->DOF2 ----------->GT1 --->TOE2(3)  <---------ALFIN1    --------->At4g35610             ---------->DOF2  --------->WOX13(1)   taatcttaagcaatcaacacctaaaaactaattctcaactgagatctatagttgttattgaaaaacacaaaagaaaagataaagtcaatcggcaaaaaaa  10760400                                                                               --------->YAB1                                                                               <---------ICU4                                                                              <---------ATHB51                                                                              --------->AHL20(2)                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                         <---------AHL20(2)                                                                      --------->AHL20(1)                                                                     <---------ICU4                                                                     --------->AHL20(2)        <-----                                                                     --------->ATHB51          ------                                                                     <---------AHL20(2)      <------MYB46(1)                                                                    <---------YAB1    ---------------                                                                    --------->ICU4    <--------------                                                                 <---------AHL20(2)  <---------------                                     --------->ATHB12          ----------->GT1--------->ICU4 <------MYB83                                    <---------MYB52(1)         <---------ANAC55(2)   <---------------      ------>NtERF2---------->DOF2 <-----------HVH21           --------->ANAC55(2) <-----------GT1     --------->DEAR3(1)  --------->WOX13(1)                   --------->MYB59 <---------AHL20(2) ----ID1    ---------->DOF2        <-----------TGA1     ---------->DOF2<---------YAB1================   caaatcgacgacgaaaaagagaaaagtcagtcaaaaccgtcattgaaaaccagattaacaaagttatgtaattattttaaataattatctacatttggtt  10760500      <---------ZAT14      --------->ZAT14      <---------ZAT18      --------->ZAT18   --------->MYB52(1)    --------------->AtSPL8 ----ARR14(2)         <---------MYB46(2) --->ARR14(2)         <---------MYB111(1)                                          ----------->GT1 >AGL15               <---------MYB52(2)                                    ----------->GT1 -AGL15   <---------------AGL15                     <-------TEIL            <---------ANAC46 --AGL3   --------------->AGL15            --------->AHL20(2)          <----------DOF2 --AGL2  ----------------->AGL1            <---------AHL20(2)          <---------DAG2 =========================MADS_MADS      <----------DOF2 ---------->DOF2<----------DOF2            --   ctgcatagtgtaccaatttgtgtaactaacaaatatttggggtcttttattaagttcataaaagttagaggtgccttttcgtaaatagtaaaaaacaatg  10760600                                                                                        --------->At4g35610                                                                                        <---------At4g35610                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   ----------->RAV1(2)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   --------->At4g35610                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                    ------->TEIL                 <xxxxxxxxxxxxxxxxxxx                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxxx                                                 --------->TOE1(1)               xxxxxxxxxxxxxxxx>smallRNA(i)                                                 --------->ANAC46               <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxx                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxx                                   --------->LBD16  --------->SPL7            <xxxxxxxxxxxxxxxxxxxxxx                                   <---------ANAC46<---------ALFIN1           <xxxxxxxxxxxxxxxxxxxxxx                                   <xxxxxxxxxxxxxxxxsmallRNA(i)               <xxxxxxxxxxxxxxxxxxxxxx                                  <---------ANAC58 <---------CCA1(2)          <xxxxxxxxxxxxxxxxxxxxxx                                  <---------ANAC58<xxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxx                                  <---------ANAC46<xxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxx                                 <---------LBD16 <xxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxx                                 <-------TEIL    <xxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->ALFIN1      --------->LBD16             <----------DOF2                       --------->DAG2        <------ZmHOX2a(2)            --------->ZAT18   ---------                      ---------->DOF2       --------->ARR14(2)            <---------ZAT18  <-------TEIL                   --------->YAB1<xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->AHL20(2)       <---------ARR14(2)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxx                --------->YAB1<---------GLK1(1)<xxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxx             <------ZmHOX2a(1)<---------At4g35610<xxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxx             --------->YAB1   <xxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxx            ----------->GT1  ----------->ARR10 <xxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxx -------->DOF2  ----------->GT1 --------->ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxx   taaaagaagaaggaaggataataaaaaagtggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcc  10760700           --------->bZIP60(1)  *TSS  <---------YAB1  <---------MYB46(3) xxxsmallRNA(si3) xxsmallRNA(se3) xxsmallRNA(si3) xxsmallRNA(fl3) xxsmallRNA(le3) xxsmallRNA(i) xxsmallRNA(s) xxsmallRNA(fl3) xxsmallRNA(si3) xxsmallRNA(se3) xxsmallRNA(si3) xxsmallRNA(se3) xsmallRNA(se3) xxsmallRNA(fl3) xxsmallRNA(le3) xxsmallRNA(fl3) xsmallRNA(fl3) xxsmallRNA(se3) xsmallRNA(se3) xxsmallRNA(si3) xxsmallRNA(l2) xxsmallRNA(si3) xxsmallRNA(fl3) xxsmallRNA(s2) xxsmallRNA(i2) xsmallRNA(fl3) xsmallRNA(si3) xsmallRNA(le3) xxsmallRNA(se3) xsmallRNA(se3) xxsmallRNA(le3) xsmallRNA(le3) xsmallRNA(se3) xxsmallRNA(le3) xxsmallRNA(fl3) xxsmallRNA(i2) xxsmallRNA(s2) xxsmallRNA(se3) xsmallRNA(i2) xsmallRNA(l2)--------->YAB1 xxsmallRNA(l2) xsmallRNA(si3) xxsmallRNA(si3) xxsmallRNA(se3) xsmallRNA(se3) xxsmallRNA(si3) xxsmallRNA(fl3) xxsmallRNA(se3) xsmallRNA(se3) xxsmallRNA(l2) xxsmallRNA(se3) xxsmallRNA(i2) xxsmallRNA(fl3) xxsmallRNA(fl3) xxsmallRNA(si3)                                                                         --------->At4g35610 xsmallRNA(fl3)                                                                         <---------ARR14(2) >REM1(1)  <---------bZIP60(1)                                                   --------->O2 xxsmallRNA(s2)                                                                  --------->TGA1a xxsmallRNA(si3)                                                                 <---------TGA1a xxsmallRNA(i2)            --------->AHL20(2)                       <---------ARR14(2)  --------->ARR14(2) xsmallRNA(fl3)          --------->TOE2(3)                          --------->ARR14(2)  --------->GLK1(2) xxsmallRNA(se3)   --------->YAB1      --------->AHL20(1)        <---------TOE1(2)     <---------GLK1(2) xxsmallRNA(le3)  <---------YAB1----------->GT1              ------>ZmHOX2a(1)   <---------O2   *TSS   ccattcgttgatgatatcatattataaacttaaatagcaaatatactaattctcttcttaatcctcccaagttccgacttctctcgtcggaatctgcaaa  10760800                                       --------->ARR11(3)                                --------->ANAC58                  --------->ALFIN1                                --------->ANAC46                 <---------MYB52(1)               --------->At4g35610     <---------ARR11(3) <----------DOF2  ------>ZmHOX2a(1)             --------->ARR11(3) --------->ANAC58  ------>NtERF2 --------->LBD16                    <-           ----------->ARR10  --------->MYB52(1) --------->DEAR3(1)     ------>ZmHOX2a(1)         <--       <---------HSFB2a(2)  <---------MYB52(2)--------->ANAC46<---------LBD16          --------->ARR14(2)   tttcgaaatcgcgaagatgctgagaaaactactaacgcaaacatcttctcgccgtcttctcttttccggtgttcctcctctcttctctaaatccactatt  10760900                                       ------>ZmHOX2a(1)                                  --------->DEAR3(1)                                 <------NtERF2                                ------>NtERF2                               --------->DEAR3(1)                               <---------ALFIN1                  --------->LBD16                              <---------ABI4(2)                  --------->HSFB2a(2)                              --------->ATERF1(1)                <---------ANAC55(2)                              --------->MYB46(3)        --------->WRKY12                             <---------ATERF1(1)        --------->WRKY38(1)                             ------>NtERF2            <-------GAMYB                            <---------ARR14(2)      <------NtERF2<---------HSFB2a(2)          <---------ICU4    --------->ARR14(2)     --------->LBD16         ------>ZmHOX2a(1)  --------->PCF2         ------>NtERF2 --------->ANAC55(2)                -        --------->TOE2(3) --------->LBD16         --------->ANAC46--------->LBD16                   <   <---------MYB52(1)    --------->ANAC46        <---------LBD16<---------LBD16        ============== --------At5g28300      <---------LBD16--------------------->WRI1--------->ANAC46      ------>ZmHOX2a(2) ---------GT1     ------>ZmHOX2a(1)--------->ORA47(1)--------->DEAR3(1)                --------->HSFB2a(1)   tcaccgttttcctcattatcctcttctccggagccaccgtcctcagagagtcccgccgttgaacatcccggaacaacaatctccatcgatcgttcttctc  10761000                  <---------ARR14(2)                  --------->ARR14(2)                  ------->TEIL                               <---------MYB46(3)                  <-----------ARR10                      <---------YAB1                  <---------ARR11(1)                   <---------At4g35610                      <----                 <---------ARR14(1)                   <---------ARR14(2)                        -----                 <---------CCA1(2)                    --------->ARR14(2)                  <<<<<<<<<GATA-4              <-------TEIL                     <---------ARR14(2)                         <<<<<<<<<GATA-1            <---------MYB52(1)                 --------->ARR14(2)                         <<<<<<<<<GATA-2          --------->LBD16                  <-----------------AG                           <<<<<<<<<GATA-3         <---------LBD16                   <-----------------AGL1                        ------->TEIL         --------------------->WRI1      ----------->HVH21  <---------WOX13(1)           --------->ARR14(2)       ------>ZmHOX2a(1)             <---------YAB1<------MYB83                       <---------YAB1 -------->ZAT14<---------ANAC58 --------->ANAC58   <------MYB46(1)                  --------->YAB1  < ---------ZAT14<---------ANAC58 --------->ANAC58  --------->MYB59            <------ZmHOX2a(2)------- =============HOX2a_HOX2a     <---------ALFIN1 <---------GLK1(2)            --------->ARR11(3)<------   tctatactcctcccggttcgtatctcactctcacactctatgtttgacagatttggtatctgattgttggaaattttagatcactctcatgaatccacac  10761100       --------->ZAT2       <---------ZAT2       <---------At4g35610          <---------TOE1(3) -----At4g35610                     <---------TOE2(3) ------>RAV1(2)--------->ANAC58  <---------YAB1                                             <-------- ---------GLK1(2)  --------->At4g35610                                --------->YAB1        --------- -->ANAC46     --------->ANAC58<--------HAHB4                      <----------DOF2         <---------GLK1(2) ---ALFIN1  <---------MYB52(1)<---------YAB1                   <-----------GT1<---------ZAT6---------   ctgattctgagctcgttaagcatctcaagagtattattaaggtagaattcgattttcatacatttttatctttcatggtagtgacaattcaaagaatctg  10761200  Previous    Next  AGI:  At3g28695.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 10760630    to: 10760702    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g28700.1    Description:  similar to Os01g0588800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043438.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14897.1); contains InterPro domain Protein of unknown function DUF185 (InterPro:IPR003788) Range:  from: 10760796    to: 10763351    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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