Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                            ---------                                                                                            <--------                                                                                          --------->DOF5.7(2)                                                         <---------LBD16                  <---------MYB52(1)                                                <<<<<<<<<GATA-4                      --------->ANAC58                                                <<<<<<<<<GATA-1                 <---------ZAT18  <---                                                <<<<<<<<<GATA-2                 --------->ZAT18  <---                                                <<<<<<<<<GATA-3         <---------ALFIN1 --------->At5g28300                                               --------->ARR14(2)---------->DOF2--------->ZAT14  <---      --------->ANAC46                         ------->TEIL   --------->At4g35610    --------->ANAC58 --->ZmHOX2a(1)                     <------------MYB.PH3(2)   <---------At4g35610    --------->ANAC46 ---ARR14(2)                      <-----------GT1        ----------->RAV1(2)    <---------ZAT14 <---- ---MYB52(1)                 <----------DOF2<---------YAB1<----------CDC5<---------ALFIN1<---------RAP2.6(3)   ctacaaacacatcagactcaatccaactcttctttttaacaaactcatgaatccacttcccctgagctaaagccccaacttgtgcacaagccgttaatgc  10733600      ------->GAMYB   --------->MYB52(1)                   <---------ARR11(3) ------>LBD16                           --------->ARR11(3) ->DOF2                               ------>MYB83 -DOF5.7(2)                           ------>MYB46(1) ------ANAC58                       ------->GAMYB ------ANAC58                      --------->MYB46(3)                  --------->TOE1(3) ------ANAC46                 <----------DOF2                          --------->TOE2(3) -------------------TaNAC69(2)------>ZmHOX2a(1)    <---------ALFIN1    <---------MYB59          -----   cgtagtaaccgaaaactcatcaggctctagtcctttaaccaacatctccctaaacacctctaaaccctcagaacctaaaccacatctaacatacccattc  10733700                                                          <---------MYB52(2)                                                         <---------At4g35610                                                         --------->At4g35610                                                        ------->TEIL                                                      <-------TEIL                           <---------MYB46(3)      <---------ANAC46                    --------->ARR11(3)             <---------ANAC58                    <---------ARR11(3)             <---------ANAC58            --------->ANAC46                --------->ANAC46                   <---------ANAC55(1)<-----------GT1   ------>ZmHOX2a(1) ---->YAB1    <-----------GT1               <---------ALFIN1         <---------AHL20(2)--------->TOE2(3)   atcaaaacatcccatttcacaacatctggttgtggaatttcatcgaacaccttgcgtgcatctaacaacaatttatcttccacataaatcctcaaaactc  10733800                                                  <---------ATHB12                                             ------>MYB46(1)                                             ----------->RAV1(1)                                             ------>MYB83                                           -                                           <---------MYB55(2)                                 -------                                           --------->MYB46(3)                              --------->ANAC55(1)                                          ------>MYB46(1)                                  <---------ANAC55(2)                                          --------->ANAC58                                 --------->ANAC46                                          --------->ANAC46                                 --------->ANAC58                                          ------>MYB83          ----------->RAV1(1)        --------->ANAC55(2)                                          --------->ANAC58     --------->MYB46(3)          --------->ANAC58                                        ------->GAMYB        -------->P           <----------DOF2  <-                      ---------->DOF2  <---------MYB55(2) <---------ANAC58        ===================             --------->ARR14(2)        --------->MYB46(3) <---------ANAC58     --------->ANAC58  ----             <---------ARR14(2)      <-----------GT1 ------->TEIL              --------->ANAC58 -----   cagtctgtacatgactatccgataaaaagacaccatttttaaccacccaacaatgaatttgcttacccacagagaagaaacaagcttttaaacacgcaac  10733900            <---------TGA1a            --------->TGA1a                                                       --------->ALFIN1            <---------ANAC55(2)                                                 <---------TGA1a            --------->O2                                           --------->RVE1(1)            <---------O2                                           --------->CCA1(1)  --------->ANAC58                                    --------------->AGL15     --------->O2  --------->ANAC58                                    <---------------AGL15     <---------ZAT2    <-- -------->YAB1                          <<<<<<<<<TBF1----------------->AGL3     --------->ZAT2  ----- ---->RAV1(1)--------->TOE1(2)   --------->ARR11(3)  ----------------->AGL2     <---------O2 <------- --------ATHB12                  <---------ARR11(3)  ================================================ =====================bZIP_DOF   --------->ARR14(2)  <-----------------AGL3     --------->TGA1a------ ----->WOX13(1)                 <---------CCA1(2)  --------->REM1(1)<---------ARR11(3)    ----------- ---->MYB46(3)            <------ZmHOX2a(1)<<<<<<<<<TBF1  --------->YAB1      <-----------RAV1(2) ---   aatcaagaaatgaaacgtgagataactaggagctatatcttcttcttcttccttcaccattaatagaaaatatcgtaaacccaggtgaggctgagagctt  10734000          <---------------AGL15      --------->ARR14(2)      <---------ARR14(2)      <---------GLK1(2)    ----------->ARR10  <---------At4g35610 -------HSFB2a(2)         <---------DOF5.7(2) ------>RAV1(2)       --------->YAB1 --At4g35610  --------->YAB1                 ------------>CBF =========================MADS_MADS      <---------GLK1(2)                   ---------->DOF2<-------- --->GLK1(2) <---------YAB1             <------ZmHOX2a(1)                  <---------ZAT6 <---------AHL20(2) >ARR10--------->GLK1(2)--------->DOF5.7(2) --------->TOE2(3)          <---------ZAT14   <---------AHL20(2) ------>HSFB2a(2)     <---------ANAC46--------->MYB59             <------ZmHOX2a(1)      --------->AHL20(2)   ctggagcagattcttatcatagtatcgtaaacgaatgagttaggaatctcaatcgaatcgaatatagaggaagcgtagtgaaagtgtttgtttaaattgg  10734100                                 <---------ANAC58                                                  <-                                 --------->ANAC55(2)                                         <-------          --------->GLK1(2)      <---------ANAC55(2)                                       <---------ANAC58         --------->DAG2          <---------ANAC46                           --------->ALFIN1<--------   ----------->GT1               <---------ANAC58                        --------->GLK1(2) <---------ANAC58 ----CBF---------->DOF2      <------------CBF                  <---------YAB1   --------->ATHB12   --   gaagatggagaaaagctgtgagaagtttgctaattgcgtaagtgtttcgatggaggccatggatgatgaatagagaatgtgttgatttgatttgcttcac  10734200                                                 <---------ANAC58                 <---------ANAC58                <---------ANAC58                 <---------ANAC58        --------->ATHB12                                --------->ATHB12             <---------ANAC46         <------------CBF                                  <---------YAB1             <---------ANAC58        --------->ATHB12                                  <-----------HVH21 ----------RAV1(1)    --------->GLK1(2)<---------WOX13(1)                     <---------ANAC58 --ZAT14     <---------ANAC58       <---------YAB1                           <---------TOE2(3) --DOF2  <---------MYB52(1)         --------->ICU4                           <---------TOE1(3) ------->ALFIN1  <---------ANAC46------------>ATHB5            ---------->CDC5<---------ANAC58    ---   tgtgttgcaacgttggcttgcgagaatcaaactcttccatgattgatggaagcttgagacgacgctcatcgtctatgttgacgtttcaatgtcattggtt  10734300                                                                             <---------------AtSPL3                                                <---------ANAC58             --------------->AtSPL3                                                <---------ANAC58            --------->ZAT14                                  --------->ANAC58                          <-------TEIL                                  --------->ANAC58                          --------->ZAT18                                  --------->ANAC46                      <---------------AtSPL8                           <-----------------AGL1                      ---------->DOF2               <-----------GT1  --------->MYB52(1)              --------->AHL20(1)      ----------->GT1  <----------DOF2    <---------YAB1        <---------AHL20(1)       ---------->ID1 ------->DOF2  --------->MYB52(1)--------->RAP2.6(3)         >>>>>>>>>>GT-3b<---------ZAT14   taaaggcaaggtttatttaacggttctttttcaaaaacggcacgatgtttgcttaagcctaagaaaaatattagaaagtacagtacgttttgttgttatt  10734400                          --------->ARR11(3)                <----------DOF2              ---------->ID1                                                                ---------             <-----------GT1                          <-----------GT1                     --------->AHL20(2)         --------->ARR11(3)                       <---------AHL20(2)    --------->YAB1    <---------AHL20(2)         <---------ARR11(3)                      <---------AHL20(2)    <---------ATHB12   --------->YAB1         <---------GLK1(2)<---------ARR11(3)     --------->AHL20(2)  --------->WOX13(1)--------->YAB1       --------->ICU4<---------ANAC46           <---------YAB1    <---------At4g35610 <---------AHL20(2)       ----------->ARR10 <---------CCA1(2)  <---------GLK1(2)<----------DOF2         --------->AHL20(2)   tgttttgcaaagatttttctttttcgtaaatcttgaaatatacttagattattaattcaccttctttcagccaatcaaaatcagccatataataaaaaga  10734500  Previous    Next  AGI:  At3g28640.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G28660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14887.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10732755    to: 10733960    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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