Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ------>MYB46(1)                                                                               <---------MYB59                                                                            ------>MYB46(1)                                                                            ------>MYB83                                                                          <---------MYB59         <--                                                                         --------->DEAR3(2)       ---                                                                       ------>MYB83              ----                                                                       ------>MYB46(1)  --------->At4g35610                                                                       --------->MYB52(1) -----------                                                                     <---------MYB59    <---------ZAT2                             --------->ANAC46                       --------->DEAR3(2)  <---------At4g35610                             --------->ANAC58                     ------>MYB46(1)------>MYB83    <---          --------->At4g35610--------->ANAC58                     --------->MYB52(1)    --------->ZAT2 ---->ANAC46        --------->YAB1                                ------>MYB83--------->MYB46(3) ---- ---->ANAC58        <---------ICU4            --------->AtLEC2  <---------MYB59--------->AtMYB61 <--- ---->ANAC58    --------->LBD16      <--------ATHB1            --------->DEAR3(2)--------->MYB52(1)   gccatcttcatcatcttccccataatcacatacgcagaataattcgacttgcaaaaccaagttgaaccgaaccgaaccgaaccaaaccgaagctgaaaat  10728700                        <-------TEIL                     <---------ANAC58                     <------MYB83                     <---------ANAC58                     <------MYB46(1)                    <------MYB46(1)                    <------MYB83                    --------->MYB59                    <---------MYB46(3)                  <--------P                 <---------ANAC58                 <---------ANAC58             <---------MYB52(1) -------AHL20(2) <-------GAMYB ------>AHL20(2)<------MYB83                              <---------TOE2(3) ----->AHL20(2) <------MYB46(1)                       --------->YAB1                ----------->GT1 >GT1   --------->MYB52(1)                         --------------->AGL15         ---------->DOF2 ------AHL20(1) <---------MYB46(3)   <------MYB46(1) --------->ICU4       ------>MYB46(1)         --- ----->AHL20(1)<---------AtMYB61     <------MYB83  <---------------AGL15  ------>MYB83            <-- ------AHL20(2)--------->MYB59  --------->ATHB12   <----------DOF2       ----------->RAV1(1) --------   ttaattggattaccggtttggttgggttcggaattgatttggtttaagctctgctataatgaggtatgtttataccaacaaaaaaaaggaaatacaacaa  10728800       <---------MYB52(1)                                                            --------->DOF5.7(2)      <-------GAMYB                             ----------->GT1                    <------MYB46(1)  -     ----------->GT1                  <------ZmHOX2a(1)                            <------MYB83 ----- ----------->HVH21                  <---------TOE2(3)                             --------->MYB59  <- ------>AHL20(1)              ------------>CBF---------->DOF2    ---------->DOF2  <---------TOE2(3)-- -------ARR11(3)      ----------->GT1----------->GT1    ----------->GT1    ----------->GT1 ---------- ---->CBF           ---------->DOF2--------->YAB1    ---------->DOF2    ---------->DOF2<---------DOF5.7(2)   tatatgaccgttaaaacatgcttaaagtaaaaaacaataaggaaattagaaagaaaaaaggaaattagaaagaagaaaggaaattaggttaacgcgttac  10728900          --------->YAB1       --------->YAB1               ------------>CBF               ------------>CBF    <---------------AGL15       --------->ANAC46                  --------->YAB1    --------------->AGL15   <---------AHL20(2)          --------->At4g35610 ------>GAMYB             ----------->TBP             <---------bZIP60(1)                    ------>ZmHOX2a(1) ---->REM1(1)           <-----------TBP               --------->bZIP60(1)                   <-------- --------MYB52(2)     <---------ANAC58             ----------->HVH21<---------YAB1          <-------- ------->MYB46(3)     <---------ANAC46       <---------DAG2  ------------>CBF   --------->MYB46(3) ->GT1<---------YAB1  <---------ANAC58       <----------DOF2--------->ANAC46   ------------>CBF     <   aacaaactataatcagaaaattttgcttatataaacacaacaatacactttttgtgacatctccacaattacaattttctcaacaatctctcttccttac  10729000    <---------ICU4    --------->YAB1   <---------YAB1 <---------ICU4 --------->YAB1                                                       <---------ARR11(3) -ANAC58                                                             <---------GLK1(2)           ---- -ANAC58   <----------DOF2                              ------------>CBF                         ---- ---------ATHB12                <---------MYB52(1)    <---------ETT(2)--------->GLK1(2) <-------TEIL<   gaatcatcatcatctttcactctgtctctgatcagttttgttcaaatatcactcgctcgacaatggaaacagaatctttcaaactcgatgttcatgtaca  10729100                                    ----------->GT1                                   --------->ANAC58                          <-------TEIL        --------->WOX13(1)            <------ZmHOX2a(2)      --------------->AtSPL8           --------->ARR11(3)      --------->ANAC58                                              <---           <---------ARR11(3) <---------TOE1(2)                                           <---------YAB1 ----->ANAC58         <---------TOE1(3)     <---------ATHB12                            ============= ----->ANAC58      <---------MYB52(1)    --------->ICU4                                 <------ZmHOX2a(1) ----------DOF2  <---------MYB46(3)--------------->AtSPL3          <------ZmHOX2a(1)    =============   agctttgtctcaagatcagtcgttagggttcgtaagtacggtactaatcagtcaatacagagaagtagaggaatttctcatcaacgagaaggatgatact  10729200                         <---------GLK1(2)                         --------->ARR14(2)                    --------->LBD16                   --------->ANAC46                  <---------LBD16             ------>ZmHOX2a(2)             ==================HOX2a_HOX2a            <------ZmHOX2a(2)            ===================HOX2a_HOX2a           <---------ARR11(3)           --------->ARR14(2)           --------->ARR11(3)           <---------ARR14(2)                                                             --------->WOX13(1)           <-----------ARR10                                                          --------->O2           <---------AGP1<---------ARR14(2)                                           <---------ANAC46          <---------ARR14(1)                   ------>MYB46(1)                   ------>MYB46(1)          <---------CCA1(2)                    ------>MYB83                      --------->MYB52(1)       <---------LBD16  <------ZmHOX2a(1)    --------->MYB46(3)                  ------>MYB83 --------HVH21  -------->P               --------->ANAC58                      --------->AtMYB61 ===================HOX2a_HOX2a          --------->ANAC58                    >>>>>>>>>>MYB80 ==================HOX2a_HOX2a         <-----------GT1              <---------TOE1(2) <---------O2   gtcacaagtctcggatcttacccggaggattcttctactagtcacgacccactaatctctctgaaactcccaagtttcaaaccaaacgacgtctatcaac  10729300                         <---------ANAC58                                        ---------->DOF2                         <---------ANAC58                            ----------->GT1                    --------->YAB1                                --------->MYB52(1)                    <---------ICU4                               --------->MYB46(3)                   <------ZmHOX2a(2)    --------->ARR11(3)     ----------->RAV1(1)                  <---------ARR11(3)    <---------ARR11(3)--------->ANAC58   <----------ID1<---------ANAC58                  --------->ARR11(3)   --------->YAB1     --------->ANAC58 ---------->DOF2 <---------ANAC58  --------->HSFB2a(2)    <---------bZIP60(2)      <---------GLK1(2)  ------->GAMYB       <-----------GT1   gtctccagacccatctccacgatcatgacttgtccgaacaattatcttacaagattgtccaagcccaacaacggcaaaaaagacaaagtttttacttgcc  10729400                                                                         <---------At4g35610                     ------>ZmHOX2a(2)                                   --------->At4g35610                 <---------YAB1                                   <---------YAB1          --------->GLK1(1)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------ANAC58           <---------GLK1(2)               --------->YAB1           --------->ANAC58      <---------ANAC46       <---------At4g35610         <----------DOF2                --------->ANAC58      <---------ANAC58      ----------->RAV1(1)     ------->GAMYB <---------ARR11(3)   --------->ANAC46   <---------ANAC46    <---------MYB52(1)    --------->MYB46(3)      <-----------HVH21           <---------MYB52(1)    <-------GAMYB   acaacaacgacctttattcatgatcgtctctgtcaaattgacacacaaggtttacaacgttgtgtcttgtgattctgctccgttggcaacagatttcgac  10729500                                                                                   --------->At4g35610                                                                      <---------TOE2(2)                                                                      <---------TOE1(2)                         <---------ARR14(2)                        ------>ZmHOX2a(2)                        <------ZmHOX2a(1)                         <------ZmHOX2a(2)<---------At4g35610                >>>>>>>>>TBF1                          --------->GLK1(2)<------ZmHOX2a(1)       ----------->RAV1(1)                 <---------At4g35610    =============HOX2a_HOX2a   caagagagccaacaagaagaagaagaggaatcgaagacttgtgccatctgtttggagaatttgttgagatcggaggattactgcgagatgcctacttgtt  10729600  Previous    Next  AGI:  At3g28620.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G43200.1); similar to C3HC4 type (RING finger) Zinc finger containing protein [Brassica oleracea] (GB:ABD65029.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 10729063    to: 10729698    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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