Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->AHL20(1)                            <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   --------->YAB1   --------->LBD16                   --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)               --------->AHL20(2)  --------->ANAC55(2)               <---------AHL20(2)  <---------ANAC55(2) <---------MYB52(1)<---------AHL20(2)  <XXXXXXXXXXXXXXXXXXXXMIR406 -----ALFIN1   <---------YAB1<---------AHL20(1) --->SPL7   --------->AHL20(1)    <---------LBD16                                            <------- ----ZAT14  <---------AHL20(1)   <-----------GT1                                             -------- --->ZAT14 --------->AHL20(2)--------->AHL20(2)--------->YAB1                                -------- --TEIL<---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->AHL20(2) --SPL7--------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   accgctaatttaaatatataattaaaataaatattttacgggattgcaattgtattttggtttgtcaaacaaatattgttttaaatagttgccaaaatct  10682900                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------AHL20(2)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AHL20(1)                                 >>>>>>>>>GATA-1<---------TOE2(3)                 --------->AHL20(1)                               ----------->GT1xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------AHL20(2)                       --------->ATHB12      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->YAB1 --ARR11(3)            <---------AHL20(2)   ------->TEIL                         --------->AHL20(2) ->ARR11(3)         <---------ARR11(3)      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx ->GLK1(2)          --------->ARR11(3)<---------AHL20(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   agttcaaattttggagaaaaaagatttattggatagataaataatgtatttaggtgtgttttgctcattttaagagattgcaattatatttttgtttgtc  10683000                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      ----------->HVH21                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                    <---------AtLEC2                                    <---------ANAC58                                    <---------ANAC58                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                ----------->GT1                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------HSFB2a(2)                                <---------ANAC58                                     --------->HSFB2a(2)                                <---------ANAC58                                    <---------ANAC58                                <---------ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------ANAC46                         xxxxxxxxxxxxxxxx>smallRNA(i)                    <---------ATHB12   ---------                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->WOX13(1)  ----------                     --------->At4g35610  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ATHB12------                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            ----------->GT1  <---------ANAC58                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------AHL20(1)   <---------AHL20(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ARR11(3)   --------->AHL20(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(1)   --------->AHL20(1) x>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---------ARR11(3)   <---------AHL20(1)   aaacattttttgtttcaaatagttgctgaatattgtgtgcgtgacatatgagattggaatatttttagtttgttaatcaatttattgctggaaaaaagtt  10683100                                           --------->LBD16                                          <---------LBD16                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                     <---------ALFIN1                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxsmallRNA(s)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <xxxxxxxxxxxxxxxxsmallRNA(s)                       xxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     <xxxxxxxxxxxxxxxxsmallRNA(s)                     xxxxxxxxxxxxxxxx>smallRNA(s)                     xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxsmallRNA(i)<---------AHL20(2)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              --------->YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)             ----------->HVH21   <xxxxxxxxxxxxxxxxsmallRNA(s)             <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)     ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------->AHL20(2) --->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<------ZmHOX2a(1)              ------->TEIL >DAG2 --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->RAP2.6(3)    <-------TEIL >DOF2 --------->ANAC58----------->GT1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->GT1xxxxxxxxxxxxx --->AHL20(2)<---------ATHB12   <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   aataactaaaagccaatgacagccattgtaaataagtcccaactccaggatttatttcataaaatgactgcaaaaatgtatatatagattcaaattagaa  10683200                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                           --------->SPL7                                                                                          <----------                                                                                          --------->SPL1(1)                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                 <---------ANAC46                                                                                 <---------ANAC58                                                                               <-----------HVH21-----                                                                         <---------ARR14(2)------->TEIL                                                                         --------->ARR14(2)<-------TEIL                   <-----------------AGL1                              ------>NtERF2    <---------ANAC58          --------->RVE1(1)                                            --------->LBD16------->TEIL         --------->ARR11(3)                                           <---------RAP2.6(2)<---------SPL7         <---------ARR11(3)                 <---------CCA1(2) <---------AHL20(2) <---------bZIP60(2) ----------->GT1<----------DOF2    ---------->DOF2 ---------->DOF2   <---------LBD16<---------ZAT14 xxxxxxxxxx>smallRNA(si3)         --------->AHL20(2)          --------->AHL20(2) <---------ANAC58   aatgggtttaaaatctctctttacatataaggcccattaaagacccataacttaaaaggcccattaaaatttccggctctgtgtcgtgtaccgtacgtac  10683300 ---->ANAC46 ---->ANAC58 -----ANAC55(2) ---->ANAC58 --->SPL1(2) ->TEIL --TEIL--------->TOE1(3) ----LBD16                                                                 ------>ZmHOX2a(2) --->SPL7                                                                 <<<<<<<<<GATA-2 -->SPL1(1)                                                               <<<<<<<<<GATA-1 ---SPL1(1)                                                               <---------GLK1(1) --SPL7--------->TOE2(3)                                                  <------ZmHOX2a(2) -ANAC58                                               --------->AHL20(2) <<<<<<<<<GATA-3 -ANAC58     --------->ARR11(3)                     --------->TOE2(3)     <<<<<<<<<GATA-4 >ANAC58     <---------ARR11(3)                ----------->HVH21         <---------ARR11(3) >ANAC58     <-----------ARR10    *TSS         --------->WRKY12          --------->ARR11(3) --------SPL14                 ----------->HVH21    --------->TOE1(3)    <---------AGP1<----------DOF2 ---->ANAC55(2)    ------>ZmHOX2a(1)     ----------->RAV1(1) <-----------GT1   --------->ZAT14   ggaacaaaaccctaaaatctcctctcacattatgggacagagacaacatttgacccttaaaattcacaaactatagatctctccagtccctttcgcaaac  10683400                                                                                             --------                                                                                             --------                                                                                           ------>MYB46(1)                                                                                           -------->P                                                                                           ------>MYB83                                                                --------->HSFB2a(2)   <-----------ARR10                                                 --------->At4g35610          <---------ARR14(2)   <-             <------ZmHOX2a(2)               <---------MYB46(3) <---------HSFB2a(2)   --------->ARR14(2)            <---------ARR11(3)               --------->ATHB12 ------>ZmHOX2a(1)       <---------ARR14(2)            --------->ARR11(3) ---------->DOF2 <---------WOX13(1)--------->ANAC46     --------->GLK1(2)   cctagcagtcgaaagatcgaaatcgaaaacccctaaaacgatgaaggtgattgctgcatttctcctcgcgaaactcggtggaaacgagaatccaacctca  10683500                           <------MYB83              ------>ZmHOX2a(2)             <------ZmHOX2a(2)                                                             <---------ANAC46            <---------ARR14(3)                                                             <---------bZIP60(2)            <---------ARR11(3)                                                          ----------->HVH21            --------->ARR14(2)                              <---------MYB52(1)        --------->bZIP60(1)            --------->ARR14(3)                            <-----------RAV1(1)         <---------bZIP60(1)            <---------AGP1<---------MYB46(3)             ------>ZmHOX2a(2)            <---------bZIP60(2)            <---------ARR14(2)<---------At4g35610       <------ZmHOX2a(2)          <---------YAB1   ------>ZmHOX2a(2)      <---------AtMYB61            --------->ARR14(2)          --------->ICU4  --------->At4g35610    <---------MYB52(1)            --------->AGP1            --------->YAB1 <---------ARR11(3)    <-----------RAV1(1)             <---------AGP1           <------ZmHOX2a(2) --------->ARR11(3) --------->GLK1(2)                  <---------ARR14(2)      --------->ARR11(3) ->TOE1(3)  --------->ARR11(3)--------->At4g35610      <---------ARR11(3)      <---------ARR11(3) ->TOE2(3)----------->ARR10<------MYB46(1)             --------->ARR11(3)     --------->YAB1 --------ATHB12    <---------GLK1(2)                 ----------->ARR10      <---------TOE2(3)  <-----   aatgatctgaagaagatcttggaatctgttggtgctgaaatcgatgaaacgaagatagatctgttgttttctctcatcaaggatcatgatgtgacggagc  10683600                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             --------                                                                                             <-------                                                                             <---------MYB46(3)<-----                                                                            <---------DEAR3(1)<------                                                                            --------->ALFIN1 <-------                                                                         <---------DEAR3(1)  <-------                                                                         <---------AtMYB61   <-------                                                 <---------MYB46(3)      --------->ALFIN1   <--------                                                 <-----------RAV1(1)   <---------MYB46(3)   ---------                                               <---------ZAT2  <---------ANAC58    <---------At4g35610                                               --------->At4g35610    <---------DEAR3(1)   <---------ATERF1(1)                                               --------->ZAT2  <---------ANAC58   --------->ALFIN1                                               <---------At4g35610    --------->ALFIN1     <---------RAP2.3(1)                                               ----------->RAV1(2)    <---------AtMYB61   <---------DEAR3(1)      <---------ANAC46                       <-----------RAV1(2)   <---------AtMYB61  <---------At4g35610     <---------ZAT2                          ================RAV   <xxxxxxxxxxxxxxxxsmallRNA(i)------     --------->ZAT2 --------->ARR11(3)   <---------MYB46(3)    <---------ANAC46 <---------MYB46(3)     --------->At4g35610             ======================RAV<------NtERF2 <---------AtMYB61<-------     <---------At4g35610             <-----------RAV1(1)     <---------MYB46(3)--------->ALFIN1------   <---------RAP2.6(2)      <----------DOF2--------->PCF5    --------->MYB55(2)<---------DEAR3(1) <-----------RAV1(1)<---------ARR11(3)  <---------AtMYB61<---------AtMYB61<---------MYB46(3)<-------- ----At4g35610  ---------->DOF2      ====================RAV<---------RAP2.6(2)<---------AtMYB61<----   ttattgctgctgggagagaaaagatgtctgctttgtcttctggtggtccagctgttgctatggtggctggaggtggtggtggtggtgctgcttcggcggc  10683700       --------->At4g35610      <---------MYB46(3)     <--------P    <-------GAMYB    <---------MYB52(1)   <---------DEAR3(2)   <---------MYB46(3) ----->RAV1(2) -NtERF2 --->ATERF1(1) ----ZAT2 ----At4g35610 ---ERF1 ---RAP2.3(1) ---MYB46(3) ---DEAR3(2) ->ATERF1(2) --RAP2.3(3) --GAMYB ---ATERF1(1)                                                     --------->ATHB12 --RAP2.3(2)                                                     --------->ICU4 --RAP2.6(2)                                                     <---------YAB1 --ATERF1(2)                                       ----------->HVH21 -LBD16<---------At4g35610                         ----------->TGA1                                <- >ATERF1(1)                                      ----------->RAV1(2)                       <------MYB46(1) --->At4g35610                                   --------->At4g35610        <----------DOF2<------MYB83 --DEAR3(1)                                  ------->TEIL        ----------->HVH21    --------->ATHB12 --->ZAT2                               <------ZmHOX2a(1)    <---------RAP2.6(3) <---------WOX13(1)<- -At4g35610                           <---------TOE2(3)      --------->ANAC58  --------->ATHB12    -- ------CDC5 ------->TEIL           ----------->HVH21         --------->ANAC58 <---------YAB1       --   tgagccggttgctgaatctaagaagaaggttgaagaagtgaaggatgaatcttctgacgatgcaggcatgatgggtctctttgattgatcatttggttag  10683800  Previous    Next  AGI:  At3g28500.1    Description:  60S acidic ribosomal protein P2 (RPP2C). Identical to 60S acidic ribosomal protein P2-3 (RPP2C) [Arabidopsis Thaliana] (GB:Q9LH85); similar to 60S acidic ribosomal protein P2 (RPP2E) [Arabidopsis thaliana] (TAIR:AT5G40040.1); similar to acidic ribosomal protein P2b [Zea mays] (GB:NP_001105390.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) Range:  from: 10683334    to: 10683968    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version