Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------O2                                                --------->TGA1a                                                --------->O2                                 --------                                                <---------ANAC46                             <-------                                                <---------TGA1a                              --------                                                ======================bZIP_DOF              <--------                                            <-----------HVH21                               ---------                                            <-----------TGA1                            --------->HSFB2a(2)                                           --------->ANAC58                          <---------ARR11(3)                                           --------->ANAC58          --------->ARR14(2) <---------HSFB2a(2)                  --------->ALFIN1         ===========================bZIP_DOF       --------->ARR14(2)                 <-------MYC3              --------->TGA1a           <---------ARR14(2)<---------LBD16                 ------->MYC2              --------->O2    <---------------AGL15     <---------ARR14(2)                 <-------MYC2              --------->bZIP60(2)   <------ZmHOX2a(1)  --------->CCA1(1)                 ------->MYC3              --------->ANAC46<----------DOF2          <---------RVE1(1)           <---------ZAT18         --------->DAG2          --------------->AGL15    --------->RVE1(1)    --------->ANAC46              ---------->DOF2         <---------ANAC58          <---------GLK1(1)    --------->ANAC58              ===================bZIP_DOF  <---------TOE2(3)    --------->GLK1(1)    --------->ANAC58     --------->YAB1    <---------O2   <---------ANAC46         --------->ARR11(3) ------>GLK1(1) =============================bZIP_DOF     <---------ANAC58         <---------ARR11(3) -------GLK1(1) <---------TGA1a   ========================bZIP_DOF  <------ZmHOX2a(1)--------->ARR11(3)   atttccaagacactgcgcatgtgggaatcatatcaaaaaagtccaacgtcacgtcgagttgctttaaggaggaactgatatagaagatatctggaaatct  10642900                                                                                           <-------TEIL                                                     --------->LBD16                       <---------ZAT14                                                    <---------ANAC46                       --------->ZAT14                                       <---------ARR14(2)                          ----------->RAV1(2)                                       <---------GLK1(2)                          ------->TEIL                                       --------->ARR11(3)                         -------->P        <---------ANAC46   ------->GAMYB            <---------ANAC58       <---------At4g35610  ----- ->GLK1(2)                <---------MYB52(2)        <---------ANAC58       --------->At4g35610  <---- --ARR14(2)               --------->MYB46(3)        <---------LBD16        --------->ZAT2<---------SPL7 ->ARR14(2)      --------->GLK1(1)     --------->ARR14(2)              <------ZmHOX2a(2)<---------ANAC46 -GLK1(1)        <---------GLK1(1)   xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ARR14(2)<---------ANAC58 >GLK1(1)  ------->TEIL --------->MYB52(1)         <---------LBD16    <---------ARR14(2)<---------ANAC58   gtaagtcttggtgtatgtgaaatccctaacgaacacagacagattttgcacattgcgggagagagcaaactcgatccagctatcaacctggggtacagtg  10643000                                                          <---------TOE1(3)  --------->LBD16                                               --------->REM1(2)   <-------TEIL          <-------TEIL                        --------->ALFIN1  <------MYB46(1)      <---------TOE2(3)                     <---------ANAC55(1) <------MYB83<---------ANAC58      <---------TOE1(3)                     <---------ANAC46    <---------MYB46(3)      <---------------AtSPL8                <---------ANAC58   <---------AtMYB61<---------ANAC58   --------->DOF5.7(2)                     <------NtERF2  <---------TOE2(3) <---------ANAC58   <---------MYB52(1)             --------->ICU4       ----------------------->TaNAC69(2) ---->ZAT14                       <---------YAB1   <------ZmHOX2a(1)  <---------CCA1(2) -----ZAT14                  ----------->GT1<---------ANAC58   --------->MYB59  <---------ANAC58   ttgtcgttaaggtccataacaagtttgaaactagttattatgggagccgtgtaggaagttagggtttggttcgtctctccgtgcttgagtttaatgtcga  10643100                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                              <------ZmHOX2a(1)                                                                                            <--------                                                --------->ARR11(3)                          <--------                        ------>NtERF2         --------->HSFB2a(1)        ---------->DOF2 <---------REM1(1)         --------->ANAC58                 --------->ANAC58   <---------ARR14(2)    <---------ARR14(2)         --------->ANAC58         <---------YAB1<---------ARR11(3)--------->ALFIN1 --------->GLK1(2)    --------->ALFIN1--------->ANAC46      --------->ANAC58   --------->ARR14(2)    --------->ARR14(2)   gacaaggtgtctcgcaccatacatgcctccatcgtcgtgataagacggaagttctcatggccaaatcggtgggaataaaggagagaatatggtgaaggat  10643200                                                                                    <---------CCA1(2)                                                                                    <---------MYB52(1)                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                               --------->PCF2                                                                               --------->PCF5                                                                              <------NtERF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  --------->ATERF1(1)      <---------ANAC46                                                       ------>NtERF2 ----------->RAV1(2)                                     <------NtERF2       <---------ATERF1(1) --------->At4g35610                                    ------>NtERF2        <---------RAP2.3(1) <---------At4g35610                                    <---------ATERF1(1)  <---------DEAR3(2) ----->ARR11(3)                                     <---------DEAR3(1)      <---------DEAR3(1) ------ARR11(3)                            <---------TOE1(2)               <------NtERF2 ---->GLK1(1)                       <---------KAN4(1)   <---------MYB46(3) --------->ATERF1(1) -----GLK1(1)                       --------->KAN4(1)  --------->ALFIN1   <-----------HVH21        -- ----ARR11(3)            --------->ZAT18  <---------MYB52(1)              <---------ATERF1(1)     --- --->ARR11(3)        --------->ARR14(2) <---------MYB46(3)                <---------SPL7       <----- -TOE1(3)           <---------GLK1(1)--------->KAN4(2) <---------DEAR3(1)<---------DEAR3(1)   <------ -TOE2(3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------LBD16      <------NtERF2         <------   atcatctggcatatagttgatgaaatctgcaccatcgattattcgttggattttgcggtggctacgatgttgtcgtcgtcggccccgtttctctcgcctt  10643300     --------->YAB1                                                ------------>CBF    --------->ICU4                                            <---------AHL20(2)                -----    <---------YAB1             <----------DOF2                --------->AHL20(2)             <------NtERF2 ------->ANAC46        <---------TOE2(3)                   <---------ICU4                  <--------- ------->ID1        <----------DOF2           <---------ICU4<-----------TBP               --------->RAP2.6(3) -----DOF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxx ----DOF2     <---------At4g35610    --------->ETT(2)  <---------AHL20(2)             ---------->DOF2 ---DAG2      --------->At4g35610    <---------ETT(2) --------->AHL20(2)         <------------CBF   ttcgccatgataacgcagatgtctttaggttttcttttgtctacagaagaattacatttaatatttatatacaatcggcctccgattgaaaagacggcaa  10643400                                                                                     --------->YAB1                                                                                     -------->HAHB4                                                                                     <---------ICU4                                                                                    --------->ICU4                                                                                    <---------ATHB51                                                                                  <---------ICU4                                                                           ------>NtERF2                            <---------ICU4             ------->TEIL      --------->LBD16                     <----------DOF2       ------>NtERF2  <---------AHL20(2)     <---------AHL20(2)                <-----------GT1            <---------ATERF1(1)  --------->ARR11(3)--------->YAB1   <---------YAB1  --------------->AGL15  --------->ANAC46--------->YAB1 <------NtERF2             -- ----->DOF2  <---------ICU4 --------->YAB1<---------DEAR3(1)  <---------TOE2(3)  --------->AHL20(2)<- -ID1 ------->TEIL <---------------AGL15 --------->RAP2.6(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  -- xxxxxxxxxxxxxxxxx>smallRNA(fl3)       ----------->HVH21<-----------TBP<---------LBD16 <---------YAB1   aagctatgaatcgactaatgacccttttaagcattaccccctcgacggcccaaaatgtatttataagattatggccgggcctattaattatgacaagttt  10643500                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                  ---             --------->AHL20(2)                                                                 <----             <---------ARR11(3)                                                                 <----             <---------AHL20(1)                                                                 -----             <---------AHL20(2)                                                                 <----             --------->ARR11(3)                                                                 -----             --------->AHL20(1)                                                                 -----          --------->AHL20(2)                              ----------->GT1                      <-----        --------->AHL20(2)       --------->ZAT18         --------->CCA1(2)                     ------ ------->TOE1(3)             --------->DAG2     <------NtERF2                                  ------ ---------DOF2 <------------CBF  <---------ZAT18<-------GAMYB                                  <----- ------->TOE2(3)            ---------->DOF2  <---------LBD16                                 --------   actttaacaaaataatatattgatactagataaagcccacttatttaggcggatgtaagatagaaaaataaacttgatagtatttgaattttgtataata  10643600                              <---------AHL20(2)                              <---------ICU4      <---------AHL20(2)      -------->HAHB4    <---------AHL20(2)        --------->ATHB51   <---------AHL20(2)         --------->ATHB12   --------->AHL20(2)         -------->ATHB1   --------->ARR11(3)        <---------YAB1   <---------ARR11(3)        --------->ICU4   <---------AHL20(1)        <---------ATHB51   --------->AHL20(1)      --------->ATHB51 -------->AHL20(2)         <---------ICU4 --------AHL20(2)          <--------HAHB4 ------->AHL20(2)          -------->HAHB4 -------YAB1               --------->YAB1 ------>ICU4               <--------ATHB1 ----HAHB4                <---------ATHB51 ----ATHB1                <---------YAB1                                   --------->AHL20(2) ---->YAB1                --------->AHL20(2)                               --------->YAB1 -----ICU4              --------->YAB1                                 --------->AHL20(2) ---->ATHB51           --------->AHL20(2)        <-----------GT1       <---------YAB1               < --->HAHB4             <---------AHL20(2)   <---------AHL20(2)         <---------AHL20(2)          <- ----ATHB51           --------->AHL20(2)   --------->AHL20(1)         <---------AHL20(2)           -- --->AHL20(2)     --------->AHL20(2)       <---------AHL20(1)         --------->AHL20(2)          --- --->ICU4         <---------AHL20(2)       <---------AHL20(2)    --------->AHL20(2)      --------->TOE2(3) ----YAB1         <---------AHL20(1)  --------->AHL20(2)         <---------AHL20(1)  <---------AHL20(2) ->YAB1 <---------AHL20(2)--------->ICU4   --------->AHL20(2)    <---------AHL20(2) --------->AHL20(2)   attaatatattttttgatattttatttaataattattgttttaaataaaattttcagtcttctgtattttattttaattatacacatttaatcttatata  10643700                            ------>ZmHOX2a(1)                           --------->TOE2(3)                         <------ZmHOX2a(2)                        <---------ARR14(2)                        --------->ARR14(2)                                                   --------                     --------->MYB46(3)                                       <---------AHL20(2) ---------YAB1       <------------MYB.PH3(1)                    --------->ANAC58       <---------AHL20(2) --------ARR11(3)  <-----------GT1                              --------->ANAC58  --------->ARR11(3) ------->ARR11(3)  --------->MYB52(1)   <---------AHL20(2)      --------->ANAC46  <---------AHL20(1) ------>YAB1    --------->YAB1   <---------AHL20(2)  ----------->GT1         --------->AHL20(2)   tgatatttgaattctaaatagtaaccgatccttattttatatttagtttagcatatagaaaaaaaaacgcaaatttctattttatatattcaattttgta  10643800  Previous    Next  AGI:  At3g28410.1    Description:  F-box family protein. Identical to Putative F-box/LRR-repeat protein At3g28410 [Arabidopsis Thaliana] (GB:Q9LSJ3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G02700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83117.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 10641389    to: 10643308    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version