Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  ----------->GT1                                    --                                                <---------ANAC58           <---------AGP1   ---------          --------->At4g35610         <-----------HVH21                   <------MYB46(1)  --------->MYB46(3)          <---------At4g35610      <------ZmHOX2a(1)                      <------MYB83    -------->P --------->GT1               <------ZmHOX2a(1)  <---------ANAC58         --------->MYB59 --------->MYB52(1) ----HSFB2a(1)       <-----------RAV1(2)        <---------ANAC46 ----------->RAV1(1)   <---------MYB52(2)   tttgtatatatcagctcttcgaggcagacgaggaagaggaggtcacattgtcgtgaaattggattagcaacatagtaggtctgtttcaaactaaccaaaa  10529800                                                        <---------ANAC58                                                   --------->ARR14(2)                --------->ANAC58            --------->ARR14(2)                --------->ANAC58     --------------------->WRI1  ---------->DOF2            <---------ZAT6           <---------ANAC58   <---------ANAC46      --------->REM1(1)         <----------DOF2    <---------ARR14(2)                     <---------GLK1(2)    ------>ZmHOX2a(1)          <---------DAG2    --------->LBD16<------ZmHOX2a(1)     ---------->DOF2 ------->WOX13(1)    ----------->HVH21      <---------ARR14(2)--------->MYB59         =============== >TOE2(3) --------------------->WRI1 <---------ANAC58   <---------ANAC58   <---------REM1(1)   tcaatcctacatcagtgtaagcctcgacagtaaccttttccttgtggattccgaatttgtgtgttaggaaagaagagatgtaagagcctaaagattgtgt  10529900               --------->At4g35610               <---------At4g35610         <-----------HVH21        --------->ALFIN1        <-----------RAV1(1)      --------->TGA1a                                                                --------->ICU4      <---------O2     <---------ZAT18                      ----------->HVH21        <---------YAB1      --------->O2<---------ZAT14                      <-------MYC3               --------->ICU4      <---------TGA1a  --------->ZAT18             <---------ZAT14         <---------ANAC58      =========================================bZIP_DOF------->MYC3        <---------ANAC58 --------->ZAT18  --------->ZAT14   <----------DOF2--------->ZAT14     <------ZmHOX2a(1)           -- ===============bZIP_DOF     <---------ATHB12      <---------ZAT18   <---------TOE2(3)            ---   aagtccccaagtgtcgcatctgtagtgagcaatgacttctttatgagtttctctgcacatgagtgaccatgaaggatgcgagtcttgatgatgagacata  10530000           --------->ARR11(3)           <---------ARR11(3)           <---------ARR14(2)                                                                      <-         ----------->ARR10                                                                        <--       --------->REM1(2)                   --------->AtLEC2                                   <------    <---------ANAC58            <---------GLK1(1)                                            --------    <---------ANAC46            --------->GLK1(1)                                            --------    <---------ANAC58          --------->ATHB12              --------->At4g35610              --------   <-------TEIL      <-------TEIL        <---------ANAC58   <---------At4g35610              <------- ------->DAG2       --------->CCA1(2)    <---------ANAC46   <---------ZAT2   <---------ZAT6  <------- ------->DOF2    <---------TOE2(3)       <---------ANAC58---------->DOF2<----------DOF2      <-------   aaaagttcgtgtagatattgagattcgactattgatttccattccttgcaaaccaaggtgaaagctgtgatgctctttagtggtaatctcgctaatatat  10530100         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       --------->ARR11(3)       <---------ARR11(3)       --------->ARR14(2)       <---------ARR14(3)       --------->AGP1       --------->ARR14(3)       <---------ARR14(2)   --------->ANAC46 --------At5g28300 ---------GT1 ---AHL20(2)                                                 <---------TOE2(3) ->AHL20(2)                                                  <---------TOE1(3) <------MYB83 ->AHL20(1)                                                  --------->MYB59   <------MYB46(1) ->ARR11(3)     --------->REM1(2)             =================================HOX2a_HOX2a --ARR11(3)     --------->ZAT14             ----------->RAV1(2)       <---------ARR14(2) --AHL20(1)     <---------ZAT14     <<<<<<<<<TBF1       --------->ATHB12------>ZmHOX2a(2) --AHL20(2)  <---------ANAC46    <<<<<<<<<TBF1------>ZmHOX2a(1)       --------->ARR14(2)   ttaccacgagatcttctgtgtagtaatctatcttcttcttcttcgttcctgactccattgatttaggttttagatcgggctaggtttactctgtttcaga  10530200                                                           <---------ANAC58                                                           <---------ANAC58                                                --------->ETT(1)                                               --------->DDF1                                 <---------AHL20(2)     <---------ARR14(2)        --------->TOE1(3)        --------->AHL20(2)     --------->ARR14(2)       --------->ZAT6            --------->AHL20(1)     <---------GLK1(2)      -------->P                 <---------AHL20(1)  --------->ANAC58   <---------MYB52(2)           --------->AHL20(2)   --------->ANAC58   --------->MYB46(3)           <---------AHL20(2)<------NtERF2              <-----------GT1   <---------MYB111(1)--------->CCA1(2)        <<<<<<<<<<DREB2A        ----------->GT1   <---------MYB46(2)--------->ARR11(3)        <<<<<<<<<<DREB1A----------->HVH21                    - --------->MYB52(1)  <---------ARR11(3)        --------->RAP2.6(3)  ---------->DOF2     ---------->DOF2   gactaactaaccctaagaatatagatatatacaaataaatttgtttcatgtcggcaaggattcttgtgacaaaaggaaataactcttcggtaaagaacta  10530300                                                           -------->HAHB4                                                           <---------ICU4              --------->AHL20(2)                                                           --------->YAB1          <---------AHL20(1)                                                          --------->ICU4           --------->AHL20(1)                                                          <---------YAB1           <---------AHL20(2)                                    ---------->DOF2       <---------ATHB51         --------->AHL20(2)                              <-------TEIL           --------->ANAC55(2)          --------->AHL20(2)                        ---------->DOF2            <---------AHL20(2)         ------------>CBF-------                       <---------WRKY38(1)         <-----------GT1 <----------DOF2<---------ATHB12 ---------->GT1        <---------WRKY12 --------->ALFIN1--------->YAB1      ---------->ID1   <-------   aatggaaaaatagaagacgaatgagtcaaaggctcattaaaagttgggcttatttacataataatgggcctttctcttggcccaataaatttaaaaccca  10530400                                                                                   <---------ALFIN1                                                                                --------->ANAC58                                    ------>ZmHOX2a(1)             --------->ARR11(3) --------->ANAC46        <----------DOF2             <---------YAB1     ------>NtERF2------>ZmHOX2a(2)--------->ANAC58 <---------TOE2(3)       <---------ANAC58             --------->ANAC46          --------->ANAC46 <---------TOE1(3)       <---------ANAC58             --------->DEAR3(1)        --------->ANAC58 ----->CBF               <---------ANAC46           *TSS          <---------ARR11(3) --------->ANAC58 ----------AG      <---------AHL20(2)     ----------->GT1 <----------DOF2<---------REM1(2)  ---------   attagggtttcttttttgtttttattttcgtatgagtccttatagggttttaatcgacgcctttcttcgatcttcttcacagacgacacaccattgataa  10530500                                                                                                   --                                                                                               ------                                                                                               ------                                                                                               ------                                                 --------->YAB1                             ---------                                    --------->At4g35610                                     <--------                                    <---------At4g35610                                <------ZmHOX2a(1)                                    --------->ZAT2                                    <----------ID1-                                 ------>ZmHOX2a(2)                       ---------->DOF2    <--------                      --------->MYB52(1)  <---------WRKY38(1)--------->ANAC58      ---------->DOF2 -- >YAB1              <---------MYB59 <---------ZAT2           --------->ANAC58 ----------->GT1--------   atctccatcgtagaaagttttatctaactgtttgatcgagctgatcaacgatgaaaattgacaacgctagagaagaaaagaagaaaaaaggacagaaacg  10530600      --------->At4g35610      ----------->GT1    <-----------RAV1(2)  ----------->RAV1(1) ------->ANAC58 --->ANAC46 --->ANAC58 --->ANAC58 >ARR14(2)                                   --------->ARR11(3) -ARR14(2)                             --------------->AtSPL8                       <---------YAB1 -------->MYB46(3)                     <---------------AtSPL8            <---------YAB1 -GLK1(2)                ------>ZmHOX2a(1)   <---------ARR11(3)       <---------ATHB51          ----- ------->ANAC58       ---------->ID1 --------->STY1(2)    <---------AHL20(2)    <----------DOF2------ -->DOF2     --------->YAB1          <---------STY1(2)   --------->AHL20(2) <----------DOF2   <------   caagcaccaggtgaattagaattcgtcctcttacttactagctagtacatcttcttcgtttaaattgaacaaattatgctttctttgttatagcagaatg  10530700  Previous    Next  AGI:  At3g28223.1    Description:  similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G28330.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 10528714    to: 10530158    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g28230.1    Description:  similar to EMB2777 (EMBRYO DEFECTIVE 2777) [Arabidopsis thaliana] (TAIR:AT2G43650.1); similar to Integrase core domain containing protein [Solanum demissum] (GB:ABI34329.1); contains InterPro domain Small-subunit processome, Utp3; (InterPro:IPR007146) Range:  from: 10530452    to: 10531436    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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