Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->At5g28300                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 ----------->GT1                  ----------->HVH21              --------->MYB52(1)          <---------AHL20(2)              <---------DOF5.7(2)     <---------AHL20(2)            --------->DOF5.7(2)       --------->AHL20(2)        <---------YAB1---------->DOF2          <---------ZAT6             --------->ICU4    <----------DOF2----------->GT1       --------->DAG2           ----------->GT1 --------->CCA1(2) <---------AHL20(2)      ---------->DOF2        <----------DOF2   --------->ARR11(1)--------->AHL20(2)      --------->AHL20(2)   aaactgagaaaagtgttaacggtgaaattttctttagtaaatatttatagatatgacctttaacttattatatagaaaataaaagttgacattatatgtc  10466400                    ------->TEIL                                  --------->ANAC58                   <---------CCA1(2)                           <------ZmHOX2a(1)              --------->GLK1(2)             >>>>>>>>>>>>>>>>>LFY  --------->ANAC58             <---------GLK1(2)  <---------AHL20(2) <---------ANAC46  <----------DOF2             ----   tcttgtttgagaacagtttctgtatctctctcattttttttttttaatccattgtgtatttgtgaggaacgctttgtttaagagtttgtccatcttcaag  10466500                                 --------->ARR11(3)                                 <---------ARR11(3)                              --------->AHL20(2)                         <---------WOX13(1)                      --------->ANAC46                      <---------YAB1              --------->ETT(1)                        ===========                      <---------AHL20(2)       <------MYB83 <---------ZAT18               ---------->DOF2          <<<<<<<<<TAC1--------->ATHB51        <------MYB46(1)   --------->ANAC58    <---------ZAT6 ------->GT1        --------->YAB1          <---------MYB52(1)   --------->ANAC58    ----------->GT1-   cgttacaaaaacactcgaggttttataattgataaaatctttggccatttggtcggaatttgtgaacacgacttctcaattccaagagagttaaaagaaa  10466600                                                   <---------ICU4          ---------->DOF2                         <---------YAB1    --------->TGA1a        --------->ANAC58      <-----------GT1                         <-----------TCP11(1)    <---------TGA1a        --------->ANAC58     --------->YAB1                   --------->ATHB12    =================bZIP_DOF          --------->CCA1(1)                        <---------ATHB12  <---------ALFIN1  --------->YAB1 <---------AHL20(2)     --------->ANAC55(2)   <---------YAB1 =============bZIP_DOF --------->YAB1  --------->RVE1(1)  <---------ANAC55(2) ------>MYB46(1)   ----- -------->AtMYB61  <---------ATHB12--------->AHL20(2)     <---------ANAC46    ------>MYB83--------->PCF2   aaccacacttgagaaagtccaataagcataggcaaatttaaatatccaaattatcatttcacgtataacaaggagagaccaaatgatagaatggcccacc  10466700          <---------YAB1        <---------AHL20(2)        --------->YAB1        --------->AHL20(2)        <---------ICU4        -------->ATHB1                               *TSS        <--------HAHB4                      --------->CCA1(2)             <---------YAB1        --------->ATHB51           <-----------HVH21--------->ARR14(2)  --------->YAB1       <---------ATHB12     <---------ICU4 <---------ARR11(3)          <---------YAB1       <---------ATHB51    <---------YAB1  --------->ARR11(3)--------->LBD16                        <       --------->ICU4    <---------ICU4    --------->ARR14(2)------>ZmHOX2a(1)                  <----   ------------>CBF      --------->YAB1  --------->ANAC58   <---------LBD16           --------->ANAC46 ---->AtMYB61           <---------ATHB12 --------->ANAC58  ----------->RAV1(2)        <---------ALFIN1   aaaatttcaattatttttgagacttaatcatcattttggtcacaagatatacaaaatactctcctggatttttatcatgagtcattccacacactaagct  10466800                <---------RAP2.6(3)                 <---------ANAC46                ------>NtERF2                      <------NtERF2               <---------ETT(1)                   ------>NtERF2             ------>NtERF2<---------GLK1(1)          <---------ANAC58                       --------->ANAC58          <---------RAP2.6(2)          <---------ANAC58                       --------->DEAR3(1)        --------->ETT(2)<---------        <-----------GT1                          --------->ANAC58         <------NtERF2  --------->GLK1(1) --------->ARR11(3)                            --------->CCA1(2)     <-----------RAV1(1)<---------ARR14(2) <---------ARR11(3)                        <------NtERF2        ------>NtERF2           --------->ARR14(2) ---------CCA1(2)                        <---------DEAR3(1)    <---------RAP2.6(2)    --------->LBD16 ------DOF2   <-----------------AGL1   <-----------HVH21      --------->RAP2.6(3)   <---------LBD16<-   ttatatcttttgacttgccgacaatggcctccattactctccgtcggagagacgccgtgttattgacggccatgttggcgactgaaaccggaaatgtggc  10466900                                                     ------>ZmHOX2a(1)                                                  ------>MYB46(1)      <----------DOF2                             ------>MYB83              <----------DOF2        <- --RAV1(1)                                <---------YAB1             --------->ATHB12  <<<<<<<<<TBF1 --------YAB1---------->DOF2---------->DOF2  <---------CCA1(2)  <---------CCA1(2)     ---------------   tatgaatactttgtttaaagcagcgacttcaaaaggccttaattcttataccttcctcatctattcttatctcattggctctattgttcttcttccttct  10467000                                     <---------MYB52(1)                                             <                               <----------DOF2                                                 <-----      <---------------AGL15 --------->GLK1(2)  <-----------GT1<---------GLK1(2)                <----- --------CCA1(2)        <-----------GT1----------->GT1     <---------WOX13(1)                  <----- -------->TaNAC69(2)    --------->YAB1 --------->MYB52(2)--------->ATHB12                      <-----   cacatcttctcttataggtttctaaataacaatctttttgttagttaataaaccctgtttgattgattcttgttttgtcaaaagttttcatttgattact  10467100      <----------DOF2<------ZmHOX2a(2)                                    <---------ZAT2     <------- ---------ZAT18     --------->ARR11(3)                                    --------->ZAT2    <-------- ----ANAC46         <---------ARR11(3)                                 <---------At4g35610  --------- ----ANAC55(1)    --------->ICU4                                <---------ARR11(3)  --------->ANAC58 ----ANAC58    --------->WRKY18(1)                              --------->ARR11(3)  --------->ANAC58 ----ANAC58<---------AtLEC2                                    <---------GLK1(1)  ---------->DOF2   tgtgcattcttttgcaggtcaagatcacttccttcactaagtctttcaattctctgtaaaattggagttcttgggctgctagggtaaagccaactacact  10467200                                   ------>ZmHOX2a(1)                           <---------AHL20(2)                           --------->ATHB51                           --------->AHL20(2)                   --------->TOE1(3)                           <---------ICU4                       --------->TOE2(3)         <---------DAG2                          --------->ICU4                <---------YAB1                    <----------DOF2      <<<<<<<<<TBF1       <---------YAB1   <------MYB83 <---------AHL20(2)             <-----------GT1 --ALFIN1            ----------->GT1       <------MYB46(1)     ----------->RAV1(2)   <----------DOF2 -ZAT14          <---------YAB1   <---------MYB59    --------->ICU4               <-----------GT1 >ZAT14       <----------DOF2  <-----------GT1---------->DOF2<-----------GT1     <---------AHL20(1)   tcttgttcttcttcaacttttgaatgtaattattttcctaattgttggtaaagaaatttttattaacctgaaaatgtttctaatatactttactttttgc  10467300  Previous    Next  AGI:  At3g28130.1    Description:  nodulin MtN21 family protein. similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28100.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62735.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14809.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) Range:  from: 10466753    to: 10470148    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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