Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <------MYB46(1)                                                                   <------MYB83                                                                  --------->MYB59                                                                  <---------TOE2(3)                                                            <---------ANAC55(2)                                                            --------->ANAC58                                                            --------->ANAC58              <---------ATHB12                              --------->ANAC55(2)              --------->AHL20(2)                           <-------TEIL              <---------AHL20(2)                           --------->SPL7--------->YAB1     --------- <---------AHL20(2)         <---------AHL20(2)           <---------SPL7 <---------YAB1      --------- -------->AHL20(1)       <---------AHL20(2)              <---------ARR14(2)    --------->ARR11(3) ---------AHL20(1)     <---------YAB1                    --------->ARR14(2)    <---------ARR11(3) ----->AHL20(2)--------->AHL20(2)                      <---------------AtSPL8 --------->RVE1(1)  ---- ------AHL20(2)<---------ICU4                          <---------------AtSPL3 --------->CCA1(1) <---- ---ICU4      <---------ATHB51           <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ------   tatatattttcgacaaataatttctattattttatctaaaaaactcggataattagtcgggtacggattaggttatgaaaataccttcgtaaaaccttat  10435900                            <---------ANAC58                            <------MYB83                            <------MYB46(1)                           <---------MYB46(3)                   --------->KAN4(2)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->KAN4(1)                  <---------HSFB2a(1)                  <---------GLK1(1)                  <---------KAN4(1)                  <----------TaMYB80                  --------->HSFB2a(1)                  --------->GLK1(1)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 --------->ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ARR11(3)      --------->MYB55(2)   --------->ARR11(3)     --------->ALFIN1  --------->YAB1 <---------ARR11(3)    --------->TOE2(3) <---------YAB1  ---------->TaMYB80    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >TOE2(3)      --------->LBD16     ----------->HVH21 >TOE1(3)     <---------ANAC46 <---------ZAT14  ----------->GT1 ----->YAB1   <---------HSFB2a(2)--------->At4g35610                                             ---- -----YAB1    --------->HSFB2a(2)<---------At4g35610                      ----------->GT1        <--- --->AHL20(2)<---------LBD16<---------ANAC58 <---------ATHB12             <---------REM1(1)    ------   aatatgatattgttttccggatattcgagtgggtgttctgacctcaaatgaagataaatccctaaaaccttgtaagttgtaacatggttttagggaatca  10436000                                                            --------->ICU4                                                          ------>MYB46(1)                                                          ------>MYB83                                                        <---------MYB46(2)     <---------AHL20(2)                                 <---------MYB59    <---------AHL20(2)                                  <---------MYB111(1)    <---------AHL20(1)                                 ----------------->AG    --------->AHL20(2)                                 =====================================MADS_MADS   <---------------AGL15   <---------YAB1              ----------------->AGL1  =======================================================================MADS_MADS  <-----------------AGL3 --------->YAB1               ------->TEIL          <---------------AGL15 ------->GT1    <---------ARR14(2)                --------------->AtSPL8    --------------->AGL15 ------YAB1     --------->ARR14(2)                <---------------AtSPL8    ========================= --->YAB1      <------ZmHOX2a(1)                 <---------ANAC46---------->DOF2                    -   tgttaatttttttggcaggatagggaatcatgttaatggcattaactaatagtgtgtacctaattagtaaagacatgtctattaagagaaaattgactaa  10436100                   --------->LBD16                            --------->ZAT14                   <----          <---------MYB46(3)     --------->ALFIN1             --------->ARR14(2)               ------         <---------TOE2(3) --------->ARR11(3)          --------->YAB1                          <-----  <-----------------AG ---------->DOF2                <---------YAB1                          ------- ===================MADS_MADS   <-------MYC3       <---------ZAT6                          <---------REM1(1) -------->LBD16  <---------LBD16------->MYC3  --------->TOE2(3)                    <---------MYB46(3)   accggacaattttggttagaccggataaagaccatgtggtccatttagccttagtgatcatatgtatactcgatctagttgtaagttgttgtcatgtagc  10436200       --------->GLK1(2)       <---------ARR11(3)                     --------->ANAC58       <-----------ARR10                      --------->ANAC58 -----MYB59          --------->ZAT6    <------------CBF --->At4g35610       <---------ALFIN1 --------->ATHB12                                          ----- ----At4g35610   <---------MYB52(2)  <---------YAB1               <----------DOF2  <---------CCA1(2) >TEIL<---------GLK1(2)        <-----------ARR10   --------->TOE2(3)   <-----------GT1        *TSS   taacttcagaatcttactcactaacacttcgagtttcttctcattggcacaaaacttaactccattctctttttctctctctcttctatctttcaccaaa  10436300                                         ------->TEIL                                        <---------CCA1(2)                                       -----                                 --------->AHL20(2)                                             <----                                 <---------AHL20(2)                                         --------- ----->DOF2                     --------->AHL20(2)  --------->WOX13(1)         --------->MYB52(1) ---   atgccataactctctcttcccctatataccaaaaattaatctgtatctctctatccatcaagagagagcatcacaatgggcaaacagagaagaaccatga  10436400                                 --------->bZIP60(1)                                 <---------bZIP60(1)                              <---------TGA2(1)                              --------->TGA2(1)                              <---------bZIP60(1)                              --------->bZIP60(1)                            <---------ICU4 ---->ARR11(3)              --------->YAB1                                             <------ZmHOX2a(1) -----ARR11(3)             --------->ICU4 <---------YAB1 ------>MYB83              ------------------ >YAB1                     <---------ATHB12              ------>MYB46(1)     ------>NtERF2 --->ZmHOX2a(2)       --------->YAB1    --------->YAB1--------->DEAR3(2)    --------->DEAR3(1)   tctcatttactctgtttctcacattgacaatgatgtcatcactcatcaatggcgataccgactcaattcaactaaacgacgacgttttaggactcatcgt  10436500                                                                                           ------->GAMYB                                                                               <-----------HVH21                                                                               --------->TOE2(3)                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                              <---------bZIP60(1)                                                                              <---------ANAC46                          <-----------GT1                                     --------->ANAC55(2)                ------->GAMYB                                                 <---------ANAC55(2)               --------->MYB46(3)                                             --------->bZIP60(1)               <---------MYB52(2)          ------->TEIL  <---------ALFIN1    --------->MYB59 --->WRI1 --------->AtMYB61 <---------ALFIN1       <----------ID1   <---------AtLEC2     -------->P--   cttcaaatcagacctcaacgacccattttcacaccttgagtcatggaccgaagacgacaacactccttgttcatggagttacgtcaaatgcaaccccaaa  10436600                                                       --------->LBD16                                                       >>>>>>>>>>AtSR1                                                      --------->DEAR3(1)                                                     --------->MYB46(3)                                                   --------->MYB52(1)                                          ----------->GT1                                   --------->TOE1(3)-------->P                                   --------->TOE2(3)<---------At5g28300               --------->ZAT14                                   <---------------AGL15         ---------->DOF2  --------------->AtSPL3                                  ----------------->AGL1--------->ANAC46          <---------------AtSPL8                       <---------ETT(2)   --------->LBD16--------->LBD16          --------------->AtSPL8                <----------DOF2   ----------------->AG------->GAMYB              ---------->DOF2 ------->ARR11(3)      --------->ETT(2) <---------LBD16<---------LBD16      --------->TOE2(3) <------   acatctcgagtcatcgagctttctctcgacggtttagccttaaccggaaaaatcaaccgcggaatccaaaagcttcaacgtttaaaagtactctcacttt  10436700                                                            <---------ARR11(3)                                                            --------->ARR11(3)                                                            --------->ARR14(2)                                            ------->GAMYB   --------->AGP1                                            --------->AtMYB61 ------>ZmHOX2a(2)                                           --------->MYB46(3)<------ZmHOX2a(2)        <---------WRKY38(1)              --------->LBD16             -------->P---------->DOF2 --------->ANAC46  <---------WRKY12        <-----------HVH21                ------->GAMYB      <-----------ARR10        --------->WRKY18(1)    --------->MYB46(3)    ------->GAMYB <---------MYB55(2)  <---------ARR14(2)      <-----------HVH21 --------->MYB46(3) --------->TOE2(3)   --------->MYB46(3)  <---------AGP1         --------->LBD16 ----DOF2   <---------LBD16             <---------MYB111(2)<---------CCA1(2)     <---------LBD16   ccaacaacaacttcaccggaaacatcaacgctctctcaaacaacaaccatctccaaaagctagatcttagccacaacaatctctccggtcaaatcccttc  10436800  Previous    Next  AGI:  At3g28040.1    Description:  leucine-rich repeat transmembrane protein kinase, putative. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G56370.1); similar to hypothetical protein OsI_005136 [Oryza sativa (indica cultivar-group)] (GB:EAY77289.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB92869.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45276.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro do Range:  from: 10436294    to: 10439628    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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