Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ICU4                                                                    --------->YAB1                                                                   <---------ATHB12                                                                 --------->YAB1                                                        <---------ARR14(2)                                                        <---------ARR11(3)    --------->ZAT18                                     --------->ARR11(3)  --------->ZAT2                                        <---------GLK1(2)  --------->At4g35610                                   --------->ARR14(2)  <---------At4g35610                                 ----------->ARR10 ------>ALFIN1                                    <---------At4g35610 --->ALFIN1<---------ATHB12                     <---------HSFB2a(2)--------->ICU4   gtggagctcaccaatggagactgaaattgaatttgaagtgtctcacaatttcagaagagatactctctaatcatcacaacaacgagaaaatgagagattg  10399000                                           <------NtERF2                                        <---------At4g35610                                      <---------DEAR3(1)          <---------WOX13(1)                               --------->PCF5           <---------LBD16                              <---------SPL7            --------->ATERF1(1)                             <---------MYB46(3)    --------->ANAC58                            <---------AtMYB61      --------->ANAC46                            --------->ALFIN1       --------->ANAC58                          <---------MYB46(3)----------->GT1    <---------AHL20(2)                         <---------AtMYB61--------->LBD16 --------->LBD16                         --------->ALFIN1<---------DEAR3(1)<------NtERF2                      <---------AtMYB61 <---------LBD16--------->ZAT2                   ----------->HVH21--------->ARR14(2) --------->At4g35610                          -                   --------->ALFIN1<---------GLK1(2)   <---------ZAT2                              <-                <---------DEAR3(1) <---------ARR14(2)  ------>NtERF2         <---------At4g35610<----               <---------At4g35610 --------->ARR14(2) --------->DEAR3(1)    --------->ICU4      <----   gagagtaccatgagttgagcggtgatggtggtggtccgattcggcggagttaaacgcagccggagttaattgatggtgaagatgactgtgatgttgtgat  10399100                                                                    --------->ANAC58                                                                    --------->ANAC58                                                                  ------->GAMYB                                                                 --------->MYB46(3)                                                                --------->ANAC58                    -   <---------ANAC55(2)                                          -------->P     <---------TOE1(3)   --   --------->ANAC58                                          --------->At4g35610             <-------   --------->ANAC58                                          <---------At4g35610            <--------  <---------LBD16                                    --------->ARR14(2)        <---------TOE2(3)  <-- ---------->HVH21                                    --------->MYB52(1)     --------->ALFIN1<-------- ----------HVH21                                     <---------ARR14(2)  --------->DAG2  <---------MYB52(1) -----bZIP60(2)                                  ----------------->AGL1---------->DOF2  <-------GAMYB -----ANAC46             --------->CCA1(2)     <-----------GT1  --------->ANAC58        <---------At4g35610   gtgtcacggacaagaggcatggatgagagacgaagagaagtctcttgtttcaccagaacggggagcaaccaagaaaaggtgaaggtttgcagttgctttc  10399200                                                                                                  ---                                                                                             --------     <--------P                                                                            <---------ANAC46  <---------AtMYB61                                                                       <---------DEAR3(1) <------NtERF2            --------->At4g35610                                            <---------ZAT14 -------->LBD16           <---------At4g35610           --------->At4g35610              --------->ZAT18 ------->DEAR3(1)        --------->GLK1(2)              <---------ZAT2                 --------->ZAT18 ---DOF2                 <---------ARR14(2)            --------->ANAC58             ---------->DOF2 -ANAC58                 --------->ARR14(2)            --------->ANAC58    <---------HSFB2a(2)------- -------LBD16           <---------GLK1(2)         --------->DAG2           --------->HSFB2a(2)<------ -ANAC58     ---------->DOF2                    ---------->DOF2           <---------ETT(2)--------->ALFIN1   gccggaggtagccatcaaagtagtcggaatctgagtttgattttgtcatcgaaaggcaagctccatcttctccatgtcgagaacaagagagcgcggtgca  10399300                                                        <---------ARR14(2)                                                     <------MYB83                                   <                                                  <-------GAMYB                                   <--                   <---------ANAC46              <---------MYB46(3) <---------ANAC46              <--                 --------->MYB52(1)             <---------AtMYB61--------->ALFIN1                 <--                ----------->HVH21              <------ZmHOX2a(1) <---------AtMYB61                <--                ----------->TGA1            <------NtERF2  --------->ANAC46                     <----     <------ZmHOX2a(1)    ---------->DOF2  --------->LBD16<---------LBD16                      ------ ------->DOF2   <---------SPL7            --------->DEAR3(1)--------->LBD16                  -------- ->ALFIN1     <---------At4g35610        <---------LBD16--------->ARR14(2)   <-----------GT1 -------- -->ZAT14     --------->At4g35610 <---------TOE1(2)  <------MYB46(1)----------->GT1     ---------->DOF2 ---ZAT14    <---------MYB46(3)   <---------TOE2(2)<--------P<---------MYB52(1)--------->ANAC46------   gaaaggaggagacgatggctgacgggaacaaagtcgtatgttcgccggaggaggttggaatccggcagtggtgtttatttcacgagatgagaaagagatg  10399400        <---------ANAC46        --------->ETT(1)     <---------MYB46(3)   <-------GAMYB   <---------ANAC58   <---------ANAC58  <---------MYB46(3)  --------->MYB52(2)  --------->MYB55(2)  <------MYB46(1)  <------MYB83 <---------TOE2(2) <---------AtMYB61 ---------MYB52(1) -------ANAC58 -------bZIP60(2)                            <---------MYB46(3)               <---------WRKY18(1) -------ANAC46                             <-------GAMYB                 <---------ANAC58 -------ANAC58                            --------->ALFIN1               <---------ANAC58 -----TGA2(2)                       <------ZmHOX2a(1)                <------------CBF ----->HVH21                     <---------HSFB2a(2)                --------->ATHB12                < ->CCA1(2)<------NtERF2          --------->HSFB2a(2)               <---------YAB1           <-------- ->At4g35610          <---------------------WRI1          --------->ALFIN1   --------->WRKY38(1)   <- ----->TGA1 *TSS  <---------At4g35610     <-----------RAV1(1)  <------------CBF        ------------>CBF   acgttggttgtcggagatggagatgtcgaagtcttcgaggaagtgtgttgttgtcaagaggtggagattgttattgggtttgaccaaaacacaatattgg  10399500                                                                             --------->CCA1(2)             <---------LBD16                                                <---------ARR14(2)            <---------ZAT2                                                  --------->ARR14(2)      <            --------->ZAT2                                             --------->TOE1(2)            -          --------->ATERF1(1)                                         --------->O2               <---   <------------CBF                                                   <---------O2              <----  --------->ATHB12        ---------->DOF2                        --------->ZAT6                 <---- <---------YAB1        --------->YAB1      --------->DAG2      <---------ARR11(3)             <------ -----------TBP <------NtERF2             ---------->DOF2      --------->ARR11(3)            -------- ----CBF  <-----------RAV1(2)        <----------ID1  ----------->HVH21<---------ANAC46 <---------ZAT6 ---------DOF2 --------->LBD16 ---------->DOF2--------->ALFIN1<---------CCA1(2)<---------YAB1<-------   gcttttattggcccagccggagttaacataaagaaaagaagaacaaaagtggcccatgacatatatatctctacgtgggatatgatagagtgatagtggt  10399600                                                                                                   --                                                                                                   <-                                                                                                 ----                                                                                              -------                                                                ------->TEIL                  <------                                                             <---------YAB1                   <------                                                        <---------AHL20(2)           --------->AHL20(2)                                                       --------->AHL20(2)   <---------AHL20(2)------- ---------ZAT14                                     --------->AHL20(2)     --------->AHL20(2)-------- -------->ZAT14                                     <---------AHL20(2)     <---------AHL20(2)<------- ------MYB46(3)                                    <---------AHL20(1)     <---------YAB1  <---------AHL20(2) -----AtMYB61                                      <---------AHL20(2)   --------->ATHB51  --------->AHL20(2) -----------AtSPL8                              --------->AHL20(2)      <--------HAHB4   --------->AHL20(2) ---MYB46(3)                    --------->CCA1(2)  --------->AHL20(2)   <---------ICU4 --------->YAB1 ->ALFIN1                  ---------->DOF2     --------->AHL20(2)       -------->ATHB1<---------AHL20(2) --AtMYB61            ---------->DOF2          <---------AHL20(2)      --------->ICU4<---------AHL20(2)   ggtacacagagagagttacagagagaaagaaaagaaacgagagactaatataaattatttaatatgaatatgaattattaaatgttttttaataaataaa  10399700      ------->TEIL             <---------AHL20(2) ------->AHL20(2)           --------->ARR14(2) --------AHL20(2)   --------->CCA1(2)                                                      <---------AHL20(1) ----->AHL20(2)    <---------ARR14(2)                                                      --------->AHL20(2) -->AHL20(1)       --------->ARR14(2)                                             <---------YAB1 ---AHL20(1)       <---------ARR11(3)                                             <---------AHL20(2)< ---AHL20(2)       --------->ARR11(1)                               --------->AHL20(2)     --------->AHL20(1) -->AHL20(2)       --------->ARR11(3)      <-----------GT1       --------->YAB1--------->AHL20(1)   < ->AHL20(2)      <---------TOE2(3)       <---------AHL20(2) <---------AHL20(2) <---------AHL20(1) --- --AHL20(2)  <----------DOF2<---------ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------AHL20(2)   tttatatgcattttgctttaagatatggcatattttcttatatttatacaattttctaatataaaaatcataaattttaaaaatattattcaataaaata  10399800                                                                                               ------                                                                                              -------                                                                                          --------->AHL20(1)                                                                                          <---------AHL20(1)                                           <---------AHL20(2)                             --------->AHL20(2)                                           --------->AHL20(2)                             <---------AHL20(2)                         --------->AHL20(2)--------->AHL20(1)                    --------->AHL20(2)         <---------AHL20(2)               <---------------AGL15       <---------YAB1 --------->AHL20(1)        <---------AHL20(2)       <---------------AtSPL8             --------->AHL20(2)<---------AHL20(2)        --------->AHL20(2)<---------AHL20(2)                        <---------AHL20(2)--------->AHL20(2)    <---------YAB1       <---------AHL20(2)<---------AHL20(1)      <---------AHL20(2)--------->AHL20(2) ---------ANAC58     <---------YAB1       --------->AHL20(2)    <---------AHL20(2)   <---------AHL20(2) ---------ANAC58   --------->YAB1--------------->AtSPL8         --------->AHL20(2)<---------AHL20(2) ------>ARR11(3)   ----------->GT1      --------->YAB1       <---------ICU4      <---------AHL20(2)   gttcttgtgattaaatggctattgtaattaaatatgaagtactaataaatttagaaagactaatatttatttattttagtttataaatttaataaaataa  10399900  Previous    Next  AGI:  At3g27990.1    Description:  other RNA Range:  from: 10393912    to: 10399412    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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