Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                            <--------                                                                                           <---------ANAC58                                                                                          <------NtERF2                                                                                        <---------RAP2.6(2)                                <---------ANAC58                                     <---------ZAT6   --------->DAG2               <---------ANAC58                                     --------->ALFIN1  ---------->DOF2          <---------AHL20(2)                                        <---------AtMYB61 ----->GAMYB           <---------CCA1(1)       ----------->HVH21             <---------ZAT2<---------ANAC58 ----->At4g35610       <---------RVE1(1)       ----------->TGA1              --------->At4g35610  --- ---->MYB52(1)        --------->ARR11(3)  <---------ANAC58            --------->ATHB12<---------MYB46(3) ->ANAC46             <---------ARR11(3)  <---------ANAC58  --------->ATHB12 <---------At4g35610  ---   actgaaaagttgtttttgttttgagatatttttttcttggcaattcgtggtgacgatgatgttgatttggagttattgcagcttctagtggtggcttttc  10374100                                                                                            <--------                                                                                            <--------                                                                                        <---------At4g35610                                                                                        <-------GAMYB                                                                                        --------->At4g35610                                                                             <-----------RAV1(1)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->YAB1                    --------->ZAT18        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->At4g35610      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------>ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --DOF2 <---------ATHB12 <---------AtMYB61 <---------ZAT14      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------>ANAC46  --------->ATHB12         <---------At4g35610   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------>ANAC58 <---------MYB52(1)    <----------DOF2     <---------AtMYB61  <---------TOE2(3)   aagcctccaaatcatcagttattggcattggtggtatttctttagctcactgatatgttttggttttgccttgatgttgatgttgttgtgagttgaggta  10374200                          <---------ZAT14                          --------->ZAT14                                            xxxxxxxxxxxxxxxx                         <---------ZAT6                                              xxxxxxxxxxxxxxxx                --------->At4g35610                                                  xxxxxxxxxxxxxxxx                <---------At4g35610                                      <xxxxxxxxxxxxxxxxsmallRNA(s)               --------->MYB52(2)                                   --------->At4g35610             <---------MYB52(1)           <---------ZAT18           <---------At4g35610<------ZmHOX2a(1) <---------ANAC58        <-----------RAV1(1)                       <---------AGP1  ---------->DOF2 <---------ANAC58  ------>NtERF2    <-----------GT1          --------->ZAT6   ----------->GT1 -TOE2(3)  <---------ANAC58   <---------ANAC46         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         - -TOE1(3)  <---------ANAC58 <---------ANAC46        <---------AtMYB61  <-----------HVH21 xxxxxxxxxxxx   ttagcgttgcaatgcgtttgctgcctagtgttgtgtttttactatgcactagtggaggtagtaagactagagctgtcaattggtcaaaaggaccatgggc  10374300                                                                                    <<<<<<<<<MYB1                                                                              ------>ZmHOX2a(2)                                                                             --------->CCA1(2)                                                                             <------ZmHOX2a(2)                                                                            <---------ARR11(3)                                                                            --------->ARR11(3)                                                                            --------->ARR14(2)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                  --------->At4g35610             <--            <---------YAB1                                        <---------At4g35610             <-- xxxxxxx>smallRNA(fl3)                                          ---------->CDC5     <<<<<<<<<MYB2---- >smallRNA(i)                                              <---------ZAT14  <---------AGP1   <------MYB83 xxxxxxx>smallRNA(i2)     <---------AHL20(2)               --------->ZAT18  --------->AGP1   <------MYB46(1) -------->At4g35610  ------->TEIL                          <---------ZAT18  <---------ARR14(2)   ---- xxxxxxxxxx>smallRNA(fl3) --------->AHL20(2)               --------->ZAT14----------->ARR10--------->ALFIN1   tcagccaaacaaatactattacgaacatttaaaatttggccaaactaaaacatggttttagtggactcagcccaaatagatctgcagttagaggtgggtt  10374400                                   <---------YAB1                                 --------->ATHB51                                 <---------ICU4                                 --------->AHL20(2)                                 <---------AHL20(2)                                --------->ICU4         <---------WRKY12    --------->AHL20(1)         <---------WRKY38(1) <---------AHL20(2)        --------->WRKY18(1)  --------->AHL20(2)     <------------------------ANAC81        ------------>CBF     <---------AHL20(1)<---------At4g35610      <------MYB83          <---------ATHB12   --------->At4g35610         <---------MYB52(1)      <------MYB46(1)     --------->WOX13(1) --------->YAB1              <---------ANAC58 -------WRKY18(1)       ------------>CBF    <---------ATHB12             <---------ANAC58 ---------GT1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <----------DOF2   *TSS ------->HVH21       --------->ZAT18      --------->WOX13(1)     <<<<<<<<<TBF1         -------------- ----->WRKY38(1)     <---------ZAT18    ------------>CBF    <------------------------ANAC81   -------   tgaccatttggtcaatggataagtccaccaattaattatttttgcaatcatctgtcttcttctcttcttcttctttcgttttttctgaaatcgaattgga  10374500                                                                                 ------>ZmHOX2a(2)                                                             ========================HOX2a_HOX2a                                                             ------>ZmHOX2a(2)  xxxxxxxxxxxxxxxxxxxxx                                                           <---------ARR14(2)  --------->ARR11(3)                                                           --------->ARR14(2)  --------->ARR14(2)                                                           --------->ARR11(3)  <---------ARR11(3)                                                           <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                          ==============================HOX2a_HOX2a              --------->GLK1(2)                           <------ZmHOX2a(1)    <---------ARR14(2)             <---------GLK1(2)   --------->ARR11(3) <----------DOF2        <---------HSFB2a(2)     -- xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              xxxxxxxxxxxxxxxx>smallRNA(i) <------ZmHOX2a(1)    <- ---------->ANAC81           ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <--------- ---->GT1 <xxxxxxxxxxxxxxxxsmallRNA(i) <---------GLK1(2)<---------TOE2(3)  --------->HSFB2a(2)    xxx   gaaaaacacaattgagaatcgcttctaaattcaaagctctagattgtcttcttcctttgaggatcgtcttcttccttcgaggatcgtcttcttcttttga  10374600                                <-------TEIL        ------>ZmHOX2a(2)                                --------->SPL7     <------ZmHOX2a(2)                            --------------->AtSPL3<---------ARR11(3)                            <---------------AtSPL3<---------ARR14(2)            ----------->GT1 <---------------AtSPL8--------->AGP1 <---------ANAC46    <----------DOF2              --------->ARR14(2)               --------->AHL20(2) xx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->CCA1(2)             <----------DOF2 ------->ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         --------->TOE2(3) --------ARR14(2)--------->GLK1(1)                --------->ARR11(3)            <---------------AGL15 -DOF2     <---------MYB46(3) <---------SPL7      <---------AGP1    <---------ATHB12 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   gtatcgtctacaatgggtgatttctttgatgaggtacggtctcttatttttagatctgggttttggttcagtcattctgtttcctttaaatgtgacttag  10374700                           --------->DAG2                                                    --------                          ---------->DOF2                                                   <--------            --------->AHL20(1)                                                            <---------ICU4            <---------AHL20(2)                                                           --------->ICU4           <---------AHL20(2)                     <---------YAB1                         <---------YAB1           --------->AHL20(2)                   <-----------GT1                        <---------ICU4          <---------AHL20(2)               <-------GAMYB                              <---------YAB1    --------->AtLEC2 ----------->GT1      <---------MYB46(3)                        --------->YAB1  --------->YAB1  <---------AtLEC2        --------->MYB52(2) --------->ANAC55(2)  <-----------GT1   ctattcatgaaaattattttgcaagataaaaagttagtatttgtttgttgttactataagtttatgtattgagagatagtttttaaacatcattatcaca  10374800                                                                         --------->ICU4             x                                                                        <---------WOX13(1)       ----                                                                    --------->TOE2(3)           -----                                                             --------->YAB1                     <----                                              --------->MYB52(1)    --------->TOE1(3)           -----     <---------YAB1                         --------->ARR11(3)   <-----------GT1                -----   --------->YAB1                         <---------TOE2(3)  <--------HAHB4                 --------- ->YAB1   <---------YAB1        <---------AHL20(2)          <---------YAB1  <---------YAB1  --------- -YAB1--------->YAB1            --------->AHL20(2)          --------->ICU4--------->YAB1   <---------ATHB12   atgttttataatatgagtcaatgttttgttttgtttaattgtttgagataatggataatgctattattaacctgaatgatgaaaacaataccaataaaga  10374900                       <---------ZAT18                    --------->RAP2.6(3)         --------->CCA1(2)        --------->ARR11(3)        <---------ARR11(3)                              --------->ANAC58  --------->LBD16        --------->ARR11(1)                              --------->ANAC46 --------->ANAC46        --------->ARR14(2)                    ----------->GT1         --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         --------------->AtSPL3   ------>MYB83 ----->CCA1(2)    <---------YAB1             <---------------AtSPL8   -------->P                 <--- ---->ARR14(2)  --------->YAB1               --------------->AtSPL8   ------>MYB46(1)            ---- -----ARR14(2) =========================HOX2a_HOX2a     --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i) ---->ARR11(1) <------ZmHOX2a(2) --------->LBD16 <-------TEIL       <---------SPL7               ---- ---->ARR11(3)--------->ARR11(3) ------>ZmHOX2a(1)    ---------->DOF2<---------ALFIN1            <--- ->DOF2 <---------ARR14(2)     <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ARR14(2)                 ----- >YAB1----------->ARR10--------->ZAT18     ---------->DOF2   <---------ARR14(2)            ----------   tttggaagaagatatggatcatgaaggcactcttcctgagaaaatgaaaggtacattcaagccaattcgccctacccgtagagtttctaagtgttgaaat  10375000  Previous    Next  AGI:  At3g27940.1    Description:  LBD26 (LOB DOMAIN-CONTAINING PROTEIN 26). Identical to LOB domain-containing protein 26 (LBD26) [Arabidopsis Thaliana] (GB:Q9LIJ0); similar to LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) [Arabidopsis thaliana] (TAIR:AT2G23660.1); similar to hypothetical protein OsJ_011256 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27773.1); similar to hypothetical protein OsI_012223 [Oryza sativa (indica cultivar-group)] (GB:EAY90990.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAR00592.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883) Range:  from: 10374488    to: 10377698    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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