Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------------->AtSPL8                 <---------AHL20(2)                      <---------AHL20(2)                <---------AHL20(2)                    <---------ARR11(3)                --------->AHL20(2)                    --------->ARR11(3)              --------->TOE2(3)                     ----------->ARR10             <---------ICU4                     --------->ATHB12 <---------AHL20(2)               <--            <---------YAB1                     <---------YAB1   <---------AHL20(2)         <------ZmHOX2a(2)  <---------TOE2(3)  ----------->GT1    <---------DAG2<---------GLK1(2)             ---------->DOF2 -------DOF2--------->ICU4              <----------DOF2<---------RVE1(1)        <---------ANAC46-----   ttttatggatggacatcattaatttgtaaattgacaactatactttattttgattagatttttttttttaatggaccatttttcgtaaatgcgatcactt  10340800                               --------->ICU4                              <---------TOE2(3)                            <---------AHL20(2)                           --------->AHL20(2)      <---------ZAT2                           <---------AHL20(2)      --------->At4g35610          <---------ANAC58                        <---------AHL20(2)       <---------WRKY12   <-------TEIL<---------ANAC58         --------->YAB1 --------->AHL20(2)     <-----------HVH21   --------->ARR14(1)   --------->At5g28300 --------->AHL20(2)   --------->ALFIN1      <---------GLK1(2)<---------TOE1(2) -------YAB1           <---------AHL20(2)  <------ZmHOX2a(1)      --------->ARR11(1) ---->YAB1         <---------YAB1    <---------YAB1<---------At4g35610          <---------ANAC46   ataactgtgaataataaacttttgattaaattaatgtttattagaggagggtcagctactcatctatagattcgataccatttcgtagctatagaattac  10340900                                                                     --------->AHL20(2)                                                                    --------->YAB1  xxxxxxxxxxxxxxxx>smallRNA(i)                                             --------->DAG2         <---------AHL20(2)                                            ---------->DOF2         --------->AHL20(2)                                     --------->ATHB12               <---------AHL20(1)xxxxxxxxxxxxxxx                                   <---------MYB52(1)       <---------DAG2         xxxxxxxxxxxxxxxx>smallRNA(i)                                 ----------->GT1            <----------DOF2        <xxxxxxxxxxxxxxxxx                              <---------ARR11(3)         <-----------GT1  ---------->DOF2          <x                              --------->ARR11(3)     <------ZmHOX2a(1)   --------->AHL20(2)       <xx   <---------YAB1             --------->GLK1(2)   --------->At4g35610<---------AHL20(2) <----------DOF2   acattgttattgaaaacaatgtgttattgaaaaatctgttaattggaaaagcagaggaatcacttttcaataaaattaaagcgcttctctcttttgggct  10341000                                                                            --------->LBD16                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                    ------>ZmHOX2a(1)                                                               <----------DOF2                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      <---------AtMYB61    --------->RAP2.6(2)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <---------TOE2(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <----------DOF2               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---------         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2 <---------ANAC58           ------>MYB83       <----------DOF2<---------ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          ------>MYB46(1) --------->ARR11(3)   --------->ARR14(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---------MYB59 x>smallRNA(i)   ---------->DOF2  <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC58      <-----------GT1 xxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <-----------GT1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   taagaccctctttctcttttaaagtattcgcttctaagtggaatagagctttagttatggtgtttctttcctcttagccgcatttttaacctactttcag  10341100                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                            --------->ANAC58                                            --------->ANAC58                                          ---------->DOF2                                         --------->WRKY18(1)                                         <------NtERF2    <---------ICU4                                         <---------MYB52(1)                                    <-----                                        <---------RAP2.6(3)         <----------DOF2            <<<<<<                    <---------MYB52(1)  <-----------HVH21--------->ICU4                      --------                <---------At4g35610    --------->RAP2.6(2)--------->ATHB12             --------->TOE2(3)              ---------->CDC5    --------->At4g35610     <---------YAB1                <---------DAG2              <-----------RAV1(2)--------->ZAT2        --------->YAB1                  --------->TOE1(3) -DOF2  ---------->DOF2          <---------At4g35610   <---------ICU4                 --------------- xxxxxxxxxxx>smallRNA(se3)    <---------At4g35610     <---------YAB1<---------DAG2  <---------CCA1(2)   tttaatcttcaaaagctcagccgtttctcttcatcagctagccgtcaagcgagtttatcatgattaagtgctttttgggtcgtctcataccttatccgtt  10341200                                                                              ----------->RAV1(2)                                                                            <-----------GT1                                                                            <<<<<<<<<GT-1                                                                         <---------ARR14(2)                                                   <------ZmHOX2a(1)     --------->ARR14(2)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ZAT2                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->At4g35610                       <------ZmHOX2a(1)      --------->LBD16      --------->ZAT2                          --------->ALFIN1       <---------LBD16    *TSS                                 ---------->DOF2            ------>NtERF2  --------->GLK1(1)  <-----------HVH21    <----------DOF2 ------>ZmHOX2a(1)      <---------DOF5.7(2)  <---------GLK1(1) ----MYB52(1)     ============================HOX2a_HOX2a   --------->DOF5.7(2)--------->TOE2(3) <<<MYB98         =====================================HOX2a_HOX2a XXXXXXXXXXXXXXXXXXXX>MIR862-3P ->ANAC46         ------>ZmHOX2a(2)   --------->TOE2(3)   <---------ANAC46--------->GLK1(1)    <----- -->AG<---------At4g35610        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC46      >>>>>>>ZML2   actatgtcagctagcatcgatcgggctttaatggcaatgtccttaaaggaggaggatgagccgtttacgatgccggatttacctgaattctgttctagtg  10341300                                                                                   <xxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                             <---------TOE1(2)                                                                             --------->LBD16                                                                            <---------LBD16                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <-----------RAV1(2)                       <---------ANAC58                                --------->KAN4(2)                       <---------ANAC46                               <---------HSFC1(2)                    <------MYB46(1)                                   <---------HSFB2a(1)                   --------->MYB55(2)                                 --------->HSFC1(2)                   <---------MYB46(3)                                 --------->HSFB2a(1)                <------MYB83                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                <---------ANAC58                                     <---------ARR14(2)                <------MYB46(1)                                      --------->ARR14(2)                <---------ANAC46                                     <---------ARR11(3)                <---------ANAC58                                     <-----------ARR10               <---------AtMYB61                                  --------->LBD16xxxxxxxxxxxxxxxxxxxx               <---------MYB46(3)                                <---------HSFB2a(2)               --------->MYB55(2)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               --------->MYB111(1)                <---------ARR11(3) --------->GLK1(2)    <---------ATHB12               --------->MYB111(2)                <xxxxxxxxxxxxxxxxsmallRNA(i) <------ZmHOX2a(1)      --------->ALFIN1 <---------ANAC58           --------->ARR11(3)<---------GLK1(2)   <xxxxxxxxxxxx   --------->GLK1(2)<------MYB83          <-----------HVH21 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----ZAT6      --------->MYB46(2)------->TEIL <---------At4g35610--------->HSFB2a(2)----------->GT1   agaagaatgtgttgagtttggtgggtcgtgttctgaacccaaacagtcagaagatgtccaatctcatccagaatcttcccaggaaatggcaaatcagtga  10341400                                                                <---------MYB52(1)                                                              <-----------RAV1(1)                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           <---------AGP1                                                           --------->ARR14(3)                                                           --------->AGP1                                                           <---------ARR14(3)                 <----------DOF2                           <---------ARR11(3)          <---------GLK1(1)                                --------->ARR14(2)         <---------ARR14(2)                                <---------ARR14(2)         --------->ARR14(2)                                --------->ARR11(3)        <------ZmHOX2a(1)                            --------->ANAC46   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->ANAC58                              <- xxxxxxsmallRNA(se3)                                 --------->ANAC58               --------->ALFIN1- xxx>smallRNA(fl3)                            --------------->AGL15   <---------GLK1(1)      -------- xxx>smallRNA(si3)                  <---------At4g35610  ----------->ARR10    ---------->DOF2-------- xxxxxxxxxxxsmallRNA(le3)--------->YAB1       <---------------AGL15   --------->GLK1(1)   <---------CCA1(2)   gagggtaagaggaattgcgctttctaatgagaaatttcagttcattttctcttacgagcaagatctgttgggaattctagcaaagggtgttcataccttc  10341500                                                                                            ---------                                                                                           <---------ANAC46                                                                                          <---------LBD16                                                                                       --------->KAN4(2)                                                                                      <---------HSFB2a(1)                                                                                      --------->HSFB2a(1)                                                                                      --------->HSFC1(2)                                                                                      <---------HSFC1(2)                                                                                      --------->KAN4(1)                                                                                      <---------KAN4(1)                                                                                     ---------->TaMYB80                                                                                     <---------KAN4(2)                                                                                   <------ZmHOX2a(1)                                   <---------HSFB2a(1)                           <---------TOE2(3)                           <-------GAMYB                                   --------------->AGL15    <---------ZAT18       <------MYB83                                     <---------------AGL15    <---------ZAT14       <---------ANAC46                                <-----------------AGL1    --------->ZAT14       <------MYB46(1)                                 ----------------->AGL2    --------->ZAT18      --------->MYB55(2)                               <-----------------AGL2 --------ATHB12          <---------MYB46(3)                               ----------------->AGL3 -------->ATHB12       <---------MYB52(1)------>NtERF2                    =========================== ->TOE2(3)            <-------GAMYB--------->HSFB2a(1)                    ----------------->AGL1  --- ->TOE1(3)       ---------->DOF2   --------->HSFC1(2)                   <---------PCF2<----------TaMYB80   aatgagtggactctagccatagagcgttgggttgagaaccctccgactgactatctccaattcatagaagtatgggtccaaataaggaatattccggtta  10341600                                                                                                  <--                                                                                                  <--                                                                       ------>NtERF2             <---                                                                      --------->LBD16  --------->ANAC58               <---------ATHB12                                     ------>ZmHOX2a(2)  --------->ANAC58   <---------ZAT18                                                --------->ARR14(2)   --------->ANAC46   --------->ZAT14                --------->GLK1(2)               <---------ARR14(2)   --------->ANAC55(2)   <---------ZAT14                --------->ARR14(2)        <---------ANAC58          <---------LBD16 --------->ANAC46       <-----------RAV1(1)                 <---------ANAC58      <---------At4g35610 >LBD16      --------->MYB52(1)   <---------ARR14(2)      <---------ZAT18         --------->At4g35610 =====================================MADS_MADS           --------->ZAT18  --------->O2<---------ANAC55(2) ------>MYB46(3)      --------------->AGL15      <---------MYB46(3)<------ZmHOX2a(2) --------->MYB52(1)   accactacactatcccaacgattactatgttgggagaattcgttggacaagttgttgaagtggccttcgatccggccaagtctcagattacggaatatgt  10341700  Previous    Next  AGI:  At3g27883.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 4.1e-23 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 10341204    to: 10346585    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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