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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---------
--------->
ANAC46
<---------
WOX13(1)
<---------
ANAC55(2)
<---------
--------->
ANAC55(2)
<---------
ANAC58
--------->
ICU4
<---------
AtLEC2
--------->
YAB1
<---------
LBD16
<---------
ANAC58
<---------
ATHB12
--------->
ANAC58
--------->
ANAC58
------>
GLK1(2)
--------->
WOX13(1)
--------->
ANAC58
--------->
ANAC58
>
DOF2
<------
ZmHOX2a(2)
--------->
MYB52(1)
------->
TEIL
------->
TEIL
<----------
aagctcgaggggataagagcattgttagatcaatcagagggaaagattacggaagaattgaaaatgaaacttgaagatgaatcaagaaacttgcttgaca
10329300
--------->
ICU4
<---------
At4g35610
========================
HOX2a_HOX2a
<------
ZmHOX2a(1)
--------->
ANAC58
----
--------->
ANAC58
--------------------->
WRI1
<------
MYB83
<-
-->
HVH21
<---------
YAB1
------>
ZmHOX2a(1)
<----------
DOF2
<------
MYB46(1)
------
AGL15
------>
ZmHOX2a(2)
<---------
TOE2(3)
<------
ZmHOX2a(1)
----
-------
AG
<---------
YAB1
<---------
YAB1
---------->
DOF2
<---------
At4g35610
<-----------
HVH21
aggtaaggaagatgattatttga
tcctcttagttagtattgtttttaatattagtttaaaggaagacttttagctcttaggagacgataggtgtcaaaac
10329400
<---------
AHL20(2)
<---------
O2
<---------
ANAC55(2)
<---------
ANAC55(1)
--------->
ANAC55(2)
<---------
ANAC46
<----------
DOF2
<---------
ANAC58
--------->
TOE2(3)
<---------
ANAC58
------>
ZmHOX2a(2)
----------->
GT1
--------------->
AtSPL8
---------->
DOF2
--------->
AHL20(2)
--------->
At4g35610
<---------
At4g35610
<-----------------------
TaNAC69(2)
<---------
At4g35610
----->
TOE2(2)
<---------
ZAT14
<-----------
GT1
<----------
DOF2
----------
HVH21
<---------
ZAT18
<---------
ANAC58
<<<<<<<<<<<<<<<<<
LFY
------->
TEIL
------
----->
TOE1(2)
--------->
ZAT14
<---------
ANAC58
>>>>>>>>>>>>>>>>>
LFY
<-----------------
AGL1
ctgtgagtgagactattttgtgcagacaaaacacaaaagcttgtaacgtgataaatttcaaggcccaatgggcttttgatctgaacctttatggaatagc
10329500
<------
NtERF2
<---------
RAP2.3(1)
<---------
DEAR4(1)
<---------
DREB2C(2)
<---------
RAP2.3(3)
<---------
At1g77200
<---------
DEAR3(1)
----------->
GT1
<-------
GAMYB
--------->
ETT(1)
--------->
LBD16
----------->
GT1
--------->
RAP2.6(3)
<---------
LBD16
<---------
TOE2(1)
---------
<-----------
GT1
<-----------
HVH21
---------->
DOF2
<---------
TOE1(1)
<----------
DOF2
--->
At4g35610
<-----------
RAV1(1)
--------->
TOE2(3)
--------->
At5g28300
<----------
DOF2
tggatttttctgtttttctcttgtcggcgagaatataaacctaaagagggtaacccggtaaaatgagtccgagggttacactttaatgggcctttaataa
10329600
<------
------>
NtERF2
<--------
--------->
RAP2.3(2)
<-------
TEIL
--------->
RAP2.3(1)
--------------->
AtSPL8
<---------
ATERF1(1)
--------------->
AtSPL3
--------->
LBD16
--------->
MYB52(1)
------>
NtERF2
<-----------
GT1
<---------
ICU4
--------->
DEAR3(1)
--------->
AHL20(2)
<----------
DOF2
--------->
ANAC46
--------->
ANAC55(2)
---------->
ID1
------>
ZmHOX2a(1)
--------->
DEAR3(1)
<---------
ANAC55(2)
<---------
GLK1(2)
<---------
YAB1
--------->
TOE1(3)
<---------
LBD16
>
YAB1
--------->
GLK1(2)
<---------
YAB1
--------->
YAB1
--------->
TOE2(3)
<----------
DOF2
gcccattaagtatctataaataccgtacatgattcttcgtctttttcatcattcactgaaacaaaaaccctaattcctatgcttctttctccgccgcttc
10329700
--------->
YAB1
*
TSS
<---------
YAB1
--------->
GLK1(1)
<---------
YAB1
<---------
GLK1(1)
--------->
ICU4
<---------
ALFIN1
<------
ZmHOX2a(1)
--------->
ICU4
----------->
HVH21
--------->
MYB59
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
----
DOF2
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ARR11(3)
-
At4g35610
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ARR11(3)
tctgtttttggctaattagatttcgttttattaggaactctgtttt
ggcgatgatgatcaatgcttaatttctgacacctcttgtatgagaagagcttga
10329800
<---------
TOE2(3)
<---------
TOE1(3)
---------->
DOF2
------>
ZmHOX2a(2)
>
<---------
AHL20(2)
<---------
At4g35610
>
<--------
ATHB1
--------->
At4g35610
--
<---------
At4g35610
--------->
YAB1
<---------
ARR14(2)
--
<---------
ZAT18
<---------
ATHB12
<---------
AGP1
<--
<----------
DOF2
--------->
ICU4
--------->
ARR14(2)
---
taacctcttctttgagcacattatgcaatactctgagc
cttaccaatgatttttttacaaagacaagttttttggatctgaattagggtttaagagtgct
10329900
---------->
DOF2
>>>>>>>>
ARR2
--------->
ANAC58
>>>>>>>>
ARR1
--------->
ANAC58
--------->
ANAC58
------->
YAB1
---------->
DOF2
---------->
DOF2
--------->
ANAC58
------->
ATHB12
--------->
TOE2(1)
<---------
ANAC58
--------->
ZAT18
<----
-------
YAB1
--------->
TOE1(1)
<---------
ANAC46
<---------
ZAT18
<-----------
------>
ICU4
------>
ZmHOX2a(1)
<---------
ANAC58
--------->
ZAT14
<-----------
atgattgtaaaagtaattcctcgtactgaaagccaatggcttgaaagactcacattactacccatagaatatgagcactcactcttctaaatccagtttt
10330000
<----------
DOF2
<---------
ANAC58
<----------
DOF2
---------->
ID1
<---------
ANAC58
---------->
ID1
<-----------
RAV1(1)
<---------
ANAC46
<----------
DOF2
-----
AtMYB61
<---------
RAP2.6(2)
<---------
MYB52(1)
------
AG
--------->
ALFIN1
<------------------------
ANAC81
------
AGL2
---------->
DOF2
<----------
DOF2
---------->
ID1
<-----
ggttttgttgtttagcattgcaaagttgtggctttaattctttggttttgttttttagcattgtccctttgtcttttaagagccatgttttgaattgttg
10330100
--------->
ATHB12
<-----------
RAV1(1)
<---------
ICU4
--------->
AHL20(2)
--------->
WRKY38(1)
<---------
YAB1
<---------
ANAC58
<---------
MYB52(1)
--------->
ICU4
<---------
ANAC58
<-------
GAMYB
--------->
YAB1
<---------
ZAT6
<---------
YAB1
<-
<---------
ANAC58
<---------
AtLEC2
--------->
ATHB12
<---------
YAB1
--
<---------
ANAC58
---------->
ID1
<---------
YAB1
<---------
ANAC46
<---------
MYB46(3)
----
MYB46(3)
<---------
ANAC46
<-----------
RAV1(1)
--------->
ICU4
<---------
MYB52(1)
-------
ttgatagaattagtttcgttgagcaatgcccattttgttgcattgatagtgattactgattagtgtttcgtttattatttatggtgttgttgtatgtgta
10330200
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AGI:
At3g27860.1
Description:
PWWP domain-containing protein. similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G40340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14756.1); contains InterPro domain PWWP (InterPro:IPR000313)
Range:
from: 10327365
to: 10329323
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At3g27865.1
Description:
snoRNA. snoRNA
Range:
from: 10329747
to: 10329838
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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