Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->GLK1(2)                                                   <---------ARR11(3)      <---------ANAC58                       --------->MYB52(1)         --------->RVE1(1)        <---------ANAC58                    --------->ANAC46        <---------AtLEC2   <----------DOF2                  --------->ANAC58     <----------DOF2      --------->ARR11(3) >MYB52(2)        --------->ANAC46    <---------ANAC58      <---------ARR11(3)                     <- -MYB46(3)        --------->ANAC58    <---------ANAC58     <---------CCA1(2)<----------DOF2       <--   aaatgcctagctcaaaaaacacacaaaacagaataaacttgcttttgcataaaaatctgatatatctttataaacttgctttgtctataaaacataagtt  10327000                          --------->ANAC58                          --------->ANAC58                          --------->ANAC46          --------->GLK1(1)               <---------ANAC46                 <---------TOE1(3)--------->WOX13(1)               <---------ANAC58                 <---------TOE2(3)--------->YAB1     ----------->GT1    --------->MYB52(1)--------->ICU4      --------->TOE2(3)                   <-- --------TOE2(3)  --------->SPL7    --------->DAG2  <---------GLK1(1)               <----------DOF2 ---------GT1  <---------ANAC58    ---------->DOF2<------ZmHOX2a(1)                --------->TOE2(3)   taacattttgttaaatagcgtatgacaaacgaaatcgaaaaggaatatttaaggaaatctaaaacattaatcagacaagtctaaacctttttcttctcgt  10327100                                          --------->ARR14(2)                                         <------ZmHOX2a(1)                                        --------->ANAC58                                        --------->ANAC58                                      <-----------RAV1(2)                                      <------NtERF2                 <-------TEIL                                     <------NtERF2                 --------->ARR14(1)                                     --------->LBD16              --------->ARR14(2)                                    --------->DEAR3(1)            <---------GLK1(2)                                   <---------LBD16                --------->ARR11(1)                   --------->MYB52(1)------>NtERF2             --------->HSFB2a(2)<---------At4g35610              <------ZmHOX2a(1)    --------->RAP2.3(1)         <---------HSFB2a(2)--------->At4g35610          --------->LBD16        --------->ANAC46        --------->ALFIN1       <-----------RAV1(2)         <---------HSFB2a(2) <---------DAG2           <---------DEAR3(1) <---------At4g35610 ---------TBP----------->GT1 <----------DOF2     <------ZmHOX2a(1)<---------ARR14(2)      <---------YAB1   ttttatattctccagaggaaaaaaccgaaaactttacgccgcaggaaacgaggaagacggtgtttctagattcgctgcttcttcaggtgattttgattcc  10327200                          -------------->OsCBT                        <---------ANAC55(1)                        <---------ANAC58                        --------->ANAC55(2)                                                         <                        <---------ANAC55(2)                ------------>CBF                    <-----                        <---------ANAC58             <---------DAG2                     <---------TOE2(3)                    <---------DAG2              <-----------GT1                         <---------TOE2(2)                    <----------DOF2<---------ANAC46  <----------DOF2                    <---------TOE1(2)          --------->DAG2<---------ANAC46    --------->AHL20(2)                  <---------MYB52(1)  <   cttgttcttccaaaggtgtaaactttacgtgtttttctcgtgaaaaataaaaaccctttttttcaattaccaagtttcttctgtttgtcttaggtttatg  10327300                                                                               ------>MYB83                                                                               ------>MYB46(1)                                                                             --------->MYB46(3)           <------------CBF                                                  ------->GAMYB          -------->ATHB1                                                    --------->DEAR3(2)          --------->ATHB12                                            --------->KAN4(2)          <---------ICU4                          <----------DOF2    --------->KAN4(1)          --------->YAB1                       <---------ARR11(3)    --------->HSFB2a(1)         --------->ICU4                        --------->GLK1(2)     <---------HSFB2a(1)         <---------ATHB12                      --------->ARR11(3)    <----------TaMYB80 ------MYB46(1)   <---------MYB52(1)          <---------GLK1(2)      <---------KAN4(1) ----YAB1<---------YAB1                    --------->YAB1           <---------KAN4(2) ------MYB83     <-------GAMYB       --------->GLK1(2)              ---------->TaMYB80      <--------   tttggtttctaatcattgtcgttgtctaaatatgtagagaatcaagaagaatctttctggttctatggggaatattctaccgactgggtctagggtttct  10327400                                                                                                  <--                                                                                                  <--                 <----------ID1                                                                ------            <---------At4g35610                                  --------->GLK1(2)           <-------            --------->At4g35610                             <------ZmHOX2a(1)                --------      --------->HSFB2a(1)                  <---------YAB1 <---------TOE1(3)                 <------ZmHOX2a(1) -GLK1(1)  <---------YAB1     <------ZmHOX2a(1)           <---------TOE2(3)       --------->ARR11(3)-   gagaacgagggttctgatgacaacaaattgaaggagcacgatgttaagatggagaatgttaaggaagactctgaacaaattggagataatgtgaggagtg  10327500                                                                                                   <-      --------->ATHB12                                                                            ---    <---------------AGL15                                                                         ---    --------------->AGL15                                      <---------LBD16                    <-- -------ANAC58                                            <---------YAB1                          --- -------ANAC58                                         --------->GLK1(2)           <---------WRKY38(1) --->ALFIN1                                           --------->ARR11(3)          <<<<<<<<<WRKY6  === --ANAC46                                             <---------ARR11(3)        --------->YAB1  <---- ->ALFIN1                                       --------->ALFIN1         --------->ANAC58     <------NtERF2 -------->GLK1(1)  --------->ICU4             <-----------RAV1(1)        --------->ANAC58   <--------   gggtttcttcattgagagataattttgaagaattagaaaatgggtttcatgtgggagattttgtttggggagaagaagccaatagtcaacaatggtggcc  10327600                                                                                                    -                                                                                                    -                                                                          <---------ARR14(2)        <                                                                          --------->ARR14(2)        <                                                                       <---------ANAC58             -         <---------YAB1                                                <---------ANAC58             - ----------HVH21                                                <---------ANAC55(1)                 < ------>bZIP60(2)                                               <---------ANAC46                   <- ------>TGA1a                                                   <---------ANAC58                   <- -------ZAT2                                                    <---------ANAC58                  <-- ------>O2                                                    <---------AHL20(2)                 <--- =========================bZIP_DOF  <----------DOF2    ----------->GT1 --------->ANAC55(2) <--------- -------RAV1(2)    <---------At4g35610                --------->DAG2   <---------ANAC55(1) <---------DAG2 -RAP2.6(2)    <----------DOF2<---------O2          ---------->DOF2    <---------ANAC46  <---------At4g35610   aggtcagatttatgattctttagatgcttcagacttggctttgaagacaatgcagaaaggtaaattacttgtggcgtattttggagatgggagctttttt  10327700 <------MYB46(1) ----------->GT1 <------MYB83 -------->MYB46(2) -------->MYB111(2) ---------AtMYB61 ---------MYB46(3) -------->MYB111(1) -------->MYB55(2) ---------DEAR3(1)                                                       <---------HSFB2a(1)       <- -------P                     <---------ANAC46                      <---------HSFB2a(2)        ------ --------MYB55(1)             <---------ANAC58                      --------->HSFB2a(2)       ------- -----GAMYB                   <---------ANAC58                      <---------HSFC1(1)  --------->ALFIN1 ------MYB46(3)       <-----------GT1                          --------->ATHB12       <---------ANAC46 -DOF2    --------->ATHB12 <---------MYB52(1)      <---------HSFB2a(2)   --------->HSFB2a(1) <-------   ggttggtgtaatccattggaattgaaaccgtttcttgagaatttcaaagagttttcgaagatgagtgattcgagaaggtttcttcttgctgtggaagatg  10327800                                                                                            <------MYB46(1)           <------MYB83                                                                     <------MYB83           <------MYB46(1)                               <---------MYB52(1)                <---------AtMYB61 ----------HVH21                                    <----------DOF2                      <------ZmHOX2a(1) --->GLK1(2)                                   <---------At4g35610                     <---------TOE2(3) -->ARR11(3)                               ----------->HVH21          <----------DOF2  <---------TOE1(3) --At4g35610                               ----------->TGA1--------->MYB52(2)  <---------LBD16   <---   ctgtgagagagattggtgagcatgttgagaagtttttggtttgtgatgacgctgctttagttagttctgtagctttgaatttggggattaaggatggtgt  10327900  Previous    Next  AGI:  At3g27850.1    Description:  RPL12-C (RIBOSOMAL PROTEIN L12-C); structural constituent of ribosome. Identical to 50S ribosomal protein L12-3, chloroplast precursor (RPL12C) [Arabidopsis Thaliana] (GB:P36212;GB:Q9LK92); similar to RPL12-A (RIBOSOMAL PROTEIN L12-A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G27830.1); similar to ribosomal protein L12-1a [Nicotiana tabacum] (GB:CAA44226.1); similar to 50S ribosomal protein L12, chloroplast precursor (CL12) (GB:P24929); contains InterPro domain Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); contains InterPro domain Ribosomal protein L7/L12, oligomerisation; (Int Range:  from: 10326076    to: 10326950    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g27860.1    Description:  PWWP domain-containing protein. similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G40340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14756.1); contains InterPro domain PWWP (InterPro:IPR000313) Range:  from: 10327365    to: 10329323    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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