Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ---------->DOF2                            ----------->RAV1(1)                        <------ZmHOX2a(1)                      --------->LBD16                     <-----------RAV1(2)                     --------->HSFB2a(2)                     <---------HSFB2a(2)                --------->HSFC1(2)                     <---------LBD16        --------->ANAC58           --------->ANAC58       <------                     ===================RAV --------->ANAC58           --------->ANAC58       <------              <---------ANAC55(2)        --------->ZAT2 <---------HSFC1(2)                    <------ ->GT1        --------->ANAC55(2)        --------->At4g35610       --------->ZAT6 <---------SPL7   acaccaattcagcaatacgggttccaggagcaccaaaagacttagcaggccagatagaaccatcttctaacacaagcctagcattgtacgaagtccaagg  10284700             ------>MYB83        <---------ALFIN1                                                                --------->ANAC58     --------->ANAC46                                                                   --------->ANAC58   --------->ANAC46                                                                <------ZmHOX2a(2) ---TOE2(2)  ------>MYB46(1)         --------->ZAT6                            <---------HSFB2a(2) ---TOE1(2)--------->TOE2(2)      <----------DOF2                              --------->HSFB2a(2) ---TOE2(3)--------->TOE1(2)--------->YAB1---------->DOF2                  <----------DOF2   tttctccacaacacctacgatgtgcaaaaatcaaaactttcactaaaaggttttggcactaattcttaagacagagactttctcgatcaaacgaaaaatc  10284800                                                                                                  ---                                                                                             --------                                                                                           <---------TGA1a                                                                                           ==========                                                                                       --------->HSFB2a(2)                                                                                       --------------                                                                                       <-------------                                                                                       <---------HSFB2a(2)                                                                                      <--------------                                                                                      ---------------                                <---------ATHB12                                      ---------------         <----------DOF2      --------->MYB52(1)                                      <--------------    <-----------GT1        <<<<<<<<<<<<<<<<<LFY                  --------->ANAC58     <--------------  <----------DOF2  <---------ARR11(3)      --------->ANAC46      --------->ANAC58   <-----------GT1--   caagctttaccctttattcaagaactaaaacccaatggagacaatacacaatttcatcaattttgaaacggaaatgaaggcaaaatttaccagaagtggg  10284900                                                    ----------->HVH21                                                   ------>NtERF2                                                   <------NtERF2                                                   --------->LBD16                                                  --------->RAP2.6(2)                                                --------->ABI4(1)                                                ------>NtERF2                                               ------->GAMYB                                               --------->AtMYB61 ------->DOF2                                  <---------ALFIN1 ->ALFIN1                                      --------->ANAC46 ========bZIP_DOF                              --------->DREB2C(2) ->AGL15                                       --------->DEAR3(1) --AGL15                                      --------->DEAR3(2) ---AG--------->ALFIN1                        --------->MYB46(3) -->AGL1                            --------->TOE1(3)    <-----------HVH21 -->AGL2                            --------->TOE2(3)------>NtERF2                      --------->ANAC58 ---AGL2                  ----------->HVH21  <---------At5g28300                        --------->ANAC58 ---AGL1            --------->MYB52(1)   --------->ARR14(2)                   --------->CCA1(2) ------->DAG2 --------->ALFIN1   --------->GLK1(1)--------->DEAR3(1)       ----------->ARR10    -----   aaaagtgagtggagaagtggagcaacggatgacagaaaccctaaatccaccgccgcgacggtcgaaggaaggctgggaagataagctcgtaggcaaaaca  10285000                                                                                                -----                                                                                             <------MYB83                                                                                             <------MYB46(1)                                                                                         --------->MYB52(2)                                                                                         <------MYB83                                                                                         <------MYB46(1)                                                                                         <---------MYB46(3)                                                                                        <---------MYB46(3)                                                                                        <---------AtMYB61                                                                                        --------->MYB46(2)                                                                                        --------->MYB55(2)                                                                                        --------->MYB111(1)                                                                                        --------->MYB111(2)                                                                                        --------->ALFIN1                                                                                        <---------DEAR3(1)                                                     <------ZmHOX2a(2)    <---------TOE1(3) ---------                                                    <---------ARR11(3)------>NtERF2    <---------MYB55(1)                                              >>>>>>>>>TBF1          <---------ANAC46 <-------GAMYB                                          ==================HOX2a_HOX2a<------NtERF2<---------TOE1(3)                                          <------ZmHOX2a(1)     --------->MYB52(1)  <---------TOE2(3)          ------>ZmHOX2a(1)          <---------HSFB2a(2)   >>>>>>>>>TBF1  <---------TOE2(3) <-------- ----->DOF2  ---------->ID1         <---------LBD16 --------->ARR11(3)<-----------HVH21<--------P   aagcctagagtccttgttgccatggccatgttgttttctctggaggaagaagaagatcgaagaagaaaacggcgtcaaggttttttagggttggtgggtc  10285100                                          <---------ANAC58                                        <---------ARR11(3)                                        --------->GLK1(2)                                        --------->ARR11(3)                                        <---------ARR14(2)                                        --------->ARR14(2)                                   --------                                 <---------YAB1                                              <-------                               <---------ICU4                                          <---------ANAC55(2)                               --------->YAB1  <----------DOF2                         --------->ANAC55(2)                              <---------YAB1  <---------ANAC58                     <-----------HVH21     <----------DOF2          --------->ICU4  <---------ANAC58              <---------AHL20(2)   *TSS                    <---------YAB1 <---------ANAC58         <-----------GT1<------MYB83 ---->ETT(2)     <---------AHL20(2)     <-----------ARR10      <---------DAG2     <------MYB46(1) >MYB55(2)       --------->AHL20(2)    <---------ARR14(1)      <----------DOF2   --------->MYB59 -MYB46(3)      --------->AHL20(2)<-----------GT1    <----------DOF2     ----------->GT1    <--------   gatagctctttttttgaaattaattcgttgttattattacagtatcttgctttgacttttgttgacttttttctctagtaaatttggtcacataatcata  10285200                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                              <------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             <-------                            --------->YAB1                                                   --------                           <---------YAB1      <---------AHL20(2)                        <---------AHL20(2)   ---------->ID1  >>>>>>>>>NAM                --------->AHL20(2)                        --------->AHL20(2) <-----------RAV1(1) ----------->GT1          --------->YAB1                      <---------AHL20(2) ->YAB1        --------->DAG2                <---------YAB1                      <---------AHL20(2) --ICU4       ---------->DOF2              --------->YAB1 --------->DAG2         --------->AHL20(1) -YAB1     --------->AHL20(2)             <---------YAB1 ---------->DOF2         --------->AHL20(2)   gttttgttgctaaataaaaagggatgaaaatcatagttttgtttattataaaaatagaataaagtatcgaatatatgtctaaatttaatatttaaataat  10285300     --------->AHL20(2)     <---------AHL20(2) --------->AHL20(2)                                                                    --------->MYB59 <---------AHL20(2)                                                                    <---------TOE2(3) ----->AHL20(2)                                                                        --------->DAG2 ----->YAB1                                                                            <---------TOE1(3) ------AHL20(2)                                                                    --------->YAB1 -----YAB1                                                                        <---------YAB1 ---ICU4            --------->AHL20(2)                                     --------->AHL20(2) -->YAB1            <---------AHL20(2)                  ----------->GT1    <---------AHL20(2) ->ICU4        <---------AHL20(2)            ----------->GT1           <---------AHL20(2) --ATHB51     --------->AHL20(2)            <---------TOE2(3)      --------->YAB1<---------AHL20(2) --AHL20(2) <---------ARR11(3)              <---------TOE1(3) --------->AHL20(2) --------->AHL20(2) ->AHL20(2) --------->ARR11(3)      --------->AHL20(2)---------->DOF2 <---------AHL20(1)----------->GT1   tatatatataaatagattttatataaattcgaaatagaataaatataaggttaaataaaagtaaaaaaatcatatatttatattttaataaggtaaaaat  10285400                                                                                                    <                                                                                                    x                                                                                                    <                                                                                                    <                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                  <-----------GT1                                                          <xxxxxxxxx                --------->AHL20(2)                  <-----------RAV1(1)                    <xxxxxxxxx                <---------AHL20(2)          <---------YAB1                               xxxxxxxxxxxx     --------->ARR11(3)                 --------->CCA1(2)                                <xxxxxxxxxxx     <---------ARR11(3)                --------->ARR11(3)<---------ANAC58                xxxxxxxxxxxx    <------ZmHOX2a(1)                  <---------ARR11(3)<---------ANAC58               xxxxxxxxxxxxx  <---------TOE2(3)       ---------->DOF2   <---------TOE2(3)        --------->YAB1   xxxxxxxxxxxxxxx   gttttaggatattagtaattaaacgagttaaagaaatataagatttaagatagaatgttgctagcattctatcttgattttttgaagactgatttcagtt  10285500                      --------->GLK1(2)                     xxxxxxxxxxxxxxxx>smallRNA(i)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <---------YAB1--------->MYB59               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->MYB46(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        ----------->RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <xxxxxxxxxxxxxxxxsmallRNA(i)<---------MYB46(3) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------ARR14(2)            --------->ABI4(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                --------->ANAC58                   --------->MYB55(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <---------ANAC55(2)               --------->ALFIN1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ----------->GT1--------->ARR14(2)          <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ARR14(2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ARR14(2)<xx xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------HVH21--------->ANAC46        <------ZmHOX2a(2) <------ xxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <---------ARR11(3) <xxxxxx xxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxx>smallRNA(s2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <-----------GT1xxxxxxxxxxxxxxxxx xxxxxxxx>smallRNA(si3)  <---------HSFB2a(2)        --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   agaattgtggcaacaaatatgaagattccagtacttaggtcatatggtaaaatcacgcgaattcttaagttttacaagatcgaattcggtggttctcttt  10285600  Previous    Next  AGI:  At3g27740.1    Description:  CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing). similar to ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1), anthranilate synthase [Arabidopsis thaliana] (TAIR:AT1G25220.1); similar to putative carbamoyl phosphate synthase small subunit [Nicotiana tabacum] (GB:CAC85725.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46483.1); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain Glutamine amidotransferase, class I, active site (Int Range:  from: 10282498    to: 10285103    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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