Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->AtMYB61                                                                                 --------->ANAC58                                                                                 --------->ANAC58    <---------DAG2                                                               --------->ANAC46    <----------DOF2                                                          <-----------GT1  --------->At4g35610                                                     --------->ANAC55(2) -----ZmHOX2a(2)             --------->ATHB51                             ----------->GT1 ------>ARR10               <---------YAB1                                <---------ANAC55(2) ---MYB52(1)                --------->ICU4                                --------->ANAC58 ->TOE2(3)                --------->YAB1                                  --------->ANAC58       ----   gatcagctttataagtctcccatggctaccattattcgacaaaaacacaaaaaatacttataaatcgaccaagagtaagtaacaagacaccaaaacatgt  10231500                                                                            --------->ANAC46                                                                            --------->ANAC58                                                                            --------->ANAC58      ---                      --------->ANAC58                                    <---------ALFIN1     ------                      --------->ANAC58                                   <---------REM1(2)     <-----                    ---------->DOF2                                     <-----------HVH21--------->MYB52(1)                  --------->ANAC46                                     <---------ANAC58<------------MYB.PH3(2)                 <---------HSFB2a(2)                             --------->ATHB12      <---------MYB59           --------------->AtSPL8                               <---------YAB1      <---------ATHB12 ------->GT1   ------->TEIL                          <----------DOF2   <---------ANAC58<---------MYB52(2)   agtaaaaatatgctatgtacccgaaagcaactccatttccattcagttccatcttctttggtgattttcattggcttcacgccccaataactaactatta  10231600                                               ------>ZmHOX2a(2)                                               --------->HSFB2a(1)                                               <---------HSFC1(2)                                               <---------HSFB2a(1)                                              ==============HOX2a_HOX2a                                              <------ZmHOX2a(2)                                             --------->ARR14(2)                                             <---------GLK1(2)                                             <---------ARR11(3)                                            <---------ARR14(1)                                           --------->LBD16                                         <---------LBD16                                      <------NtERF2                                      ----------->HVH21                                      --------->ATERF1(1)                                     <-----------TGA1                                     <-----------HVH21                                     ------>NtERF2                                     <---------ATERF1(1)                                    --------->bZIP60(1)                                    --------->DEAR3(1)                                    <---------bZIP60(1)                                    --------->RAP2.3(3)                                    --------->RAP2.6(2)                                  <---------RAP2.3(1)                              ----------->HVH21--------->HSFC1(2)                            --------->TOE1(3)<-----------ARR10                     <---------ICU4<------NtERF2     ------>ZmHOX2a(1)            <-----------GT1 --------->TOE2(3)<---------ARR14(2)       <----------DOF2--------->TOE2(3)  <---------At4g35610 ------------>AtSPL8 <--------HAHB4--------->RAP2.3(1) --->AHL20(2)       <---------YAB1------>NtERF2=============HOX2a_HOX2a                         <---- ----AHL20(2)  --------->TOE2(3) --------->ANAC46------>ZmHOX2a(1)        <----------DOF2       -----   attgttcccctttgttaccttgatcattaaccttgacgccgtcaccggatccttcctcttcttccgatgttttcttcttttcaaatgtcatcttgctgaa  10231700                        --------->TOE1(3)                     --------->ARR14(2)                     <---------ARR14(2)                    <------NtERF2                   --------->LBD16                                                   <----------DOF2                  <---------HSFB2a(2)                                               <---------ANAC58                  <---------ATERF1(2)                                               <---------ANAC58                  --------->HSFB2a(2)                                     ------->TEIL                  --------->ATERF1(2)                           ----------------->AGL3                  --------->RAP2.6(2)                           <-----------------AGL2            <---------ALFIN1  <---------AHL20(2)                <-----------------AGL3       <-------          ------>MYB83  --------->TOE2(3)                    <---------GLK1(1)  <---------ANAC58          ------>MYB46(1)     <---------AHL20(1)  <------MYB46(1)--------------->AGL15      <--------        --------->AtMYB61     --------->AHL20(1)  ----------->GT1<---------------AGL15      <-------- -----GLK1(1)    <---------LBD16                  <------MYB83  ----------------->AGL2      <-------- ---->GLK1(1)   --------->MYB52(1)              <--------P   --------->GLK1(1)  <---------ANAC58   atctctcagacctcccactgccggaaccctaaaatatttcgctggagcaagttggtgaaatagaattccattaatggatgtcgcttgctttgatgcgtca  10231800                                                                                     --------->TOE1(3)                                                                                     --------->TOE2(3)                                <---------LBD16                                 ---------->DOF2      ----------->HVH21   <---------ICU4       <---------ARR14(2)             --------->TOE2(3) ----HVH21               <---------YAB1        --------->ARR14(2)            ----------->GT1 -ANAC58                 --------->ICU4      ----------->ARR10               <---------ANAC55(2)    - -ANAC46              <---------ZAT6--------->ARR14(2)                <---------TOE2(3) ---------->DOF2 -ANAC58              --------->ICU4<---------ARR14(2) <---------AtMYB61<------ZmHOX2a(1)      <-----   aggagagagcgacggagtaatgtagtgatcatttttcggattcaagggagatttgttttggtttttgttgataaggaaaacgtaaaaccctaaagtttgg  10231900                                                                                     --------->CCA1(2)                                                                                    --------->ARR11(1)                                                                                    <---------ARR11(3)               ------------------------>ANAC81            --------->ZAT18           --------->ARR14(2)    --------->LBD16                                      --------->ALFIN1           --------->ARR11(3)  <-----------RAV1(2)  >>>>>>>>>TBF1     <---------------AGL15                      <---------ARR14(2) -------->GLK1(2)<------ZmHOX2a(1)     *TSS            --------->ALFIN1  --------->TOE2(3) ----LBD16 ---------->DOF2 <----------ID1<----------DOF2--------->ZAT14  --------->TOE1(3)   ggaatcaggggattaaagaggagaagaagaagacaaaatagttctttaacaagaacagtgtggacgatgtcaaaacattaactgaagatatgtgtccaac  10232000                                       <------------CBF                                    <<<<<<<<<<<<<<<<<LFY                                   ----------                                    >>>>>>>>>>>>>>>>>LFY                           <-------TEIL                 ---------->DOF2 --------->DAG2    --------->ZAT6                 --------->CCA1(2)            ------------>CBF--------->LBD16    <----------DOF2       <----------DOF2    --------->At5g28300   tagctcattaggccttcaatatagcccatgcgcataaggcccattgggtctttccactattgagaagaaaactttactcgagagatacacagtgaaaggg  10232100                                                                                    <---------HSFB2a(2)                                                                                    --------->HSFB2a(2)                                                                                   <---------LBD16                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                           ==========================                                                                           ==============HOX2a_HOX2a                                                                           ------>ZmHOX2a(1)                                                                           ===============HOX2a_HOX2a                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                       <---------ARR11(3)                                                                       --------->ARR11(3)         <--                                                                    <---------TOE1(2)      <---------ANAC46                                                             <---------At4g35610 --------->ARR14(2) - ---------->ID1                  <---------YAB1              --------->At4g35610 <---------ARR14(2)<- >DOF2                           --------->ICU4           <---------MYB52(1)--------->MYB52(1)    ---   tttgttttttttagacagaaacattgttcttggtgataatttgtttagtttgtgggttttgttagcttccaaggatcctatcggatcgggaagtcgtgaa  10232200                                 <-----------GT1                              <---------YAB1                                                 <-------                           <---------MYB52(1)                                                <-------                          <-------GAMYB                                                 <---------ICU4                         <---------MYB46(3)                                            <---------YAB1                        ---------->ID1                           --------->TOE2(3)     --------->ICU4                      <---------MYB46(3)                         --------->YAB1      -------->HAHB4 =====HOX2a_HOX2a     <------MYB83                             -------->P            --------->YAB1 -------ARR11(3)      <------MYB46(1)                         --------->WOX13(1)     <---------ICU4 -------->ATHB12     <---------AtMYB61                      <---------ATHB12        --------->ICU4 -----ZmHOX2a(2)    <---------MYB52(1)                --------->ANAC58              <---------YAB1 ------>ARR11(3)  <-----------RAV1(1)                 --------->ANAC58     ----------->GT1<---------YAB1   gatcatttgtccgagtgaaactgttggtcgttatgttaccttggagataacttgggaagcaaatcaaccataagagtatgtaaaaaatgattatgacttg  10232300                                                              ----------->GT1                                                       <---------At5g28300                                                      --------->MYB52(1)                                                      <---------DOF5.7(2)                                                    --------->DOF5.7(2)       --------->ANAC46                     <----------DOF2 <-------GAMYB  ------>MYB46(1)     --------->ANAC46       <---------GLK1(2)   <-----------GT1            -------->P     --------->ANAC58------>MYB83        <---------ARR11(3)<---------DEAR3(1)    <---------GLK1(1)---     --------->ANAC58------>MYB46(1)     --------->ARR11(3)<---------ANAC46------>MYB83          ---- --ANAC58          <---------MYB59      <---------CCA1(2)------->GAMYB   --------->AtMYB61<------ZmHOX2a(1) --ANAC58   --------->AHL20(2)    <----------DOF2  --------->TOE2(3)     --------->MYB46(3)  <------NtERF2   agaacacacacaaaataaaaaccaaactcagaaactctttttatatctttttacattaacggcgttgtataaacaccaactcgaaatctgaaggaggcac  10232400  Previous    Next  AGI:  At3g27620.1    Description:  AOX1C (alternative oxidase 1C); alternative oxidase. Identical to Alternative oxidase 1c, mitochondrial precursor (AOX1C) [Arabidopsis Thaliana] (GB:O22048); similar to AOX1B (alternative oxidase 1B), alternative oxidase [Arabidopsis thaliana] (TAIR:AT3G22360.1); similar to alternative oxidase [Populus tremula x Populus tremuloides] (GB:CAB64356.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680) Range:  from: 10230282    to: 10231939    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g27630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40460.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59885.1) Range:  from: 10232353    to: 10232655    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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