Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                           <---------At4g35610                                                                                 --------->LBD16 <---                                                                               <---------LBD16<------                                                                           --------->AtLEC2--------->At4g35610 <------ZmHOX2a(1)                                                      ============================= -->MYB83                                                               <------ZmHOX2a(2)  <------NtERF2 -->MYB46(1)                                            ----------->GT1--------->ARR11(3)  <---------ZAT2 ---->P                                          <---------ZAT2        <---------ARR11(3)  --------->ZAT2 ------>RAV1(1)<---------YAB1                    --------->ZAT2    <---------LBD16        <<<<<<<<<AtERF-3 --->AtMYB61<---------YAB1 <---------GLK1(2) ------->TEIL    ---------->DOF2  ------->TEIL<<<<<<<<<AtERF-4   acaggaacatagtttttattcttgaaaccgattttcttgaacgcttgaacctgctcggatgtgaaaagctcgggatcatgcaccggagatggcagctcag  10210700                                                                                                  ---                                                                                                 ----                                                                       --------->AHL20(2)       <----  <------ZmHOX2a(2)                                                    <---------AHL20(2)      <----- --------->ARR11(3)                                                   --------->AHL20(2)     <------- <---------ARR11(3)            --------->ANAC46                     --------->TOE2(3)        -------- -----RAV1(2)              ---------->DOF2      ----------->RAV1(2)<---------ICU4           <-------- ---ZmHOX2a(1)           --------->MYB46(3)  <XXXXXXXXXXXXXXXXXXXXMIR168A/B                --------->ANAC46 ---LBD16              ----------->RAV1(1)<<<<<<<<<TBF1           <---------YAB1         <---------ALFIN1 ===HOX2a_HOX2a  <----------DOF2     <----------DOF2              --------->ICU4    ----------->HVH21   gaagatcatacttcttgagcttttgcaacaaaagcgcaactttcttcttcgcctgcatcaagagagacatcattaaattcaactctctgacacacttcac  10210800        --------->YAB1      -------->P    --------->MYB46(3) ------>LBD16                          <---------ALFIN1 ----->ANAC46                        --------->AtMYB61 -----LBD16            <----------DOF2 --------->ANAC46                                <----------DOF2 ----At5g28300  --------->GLK1(2)   --------->MYB46(3)                      --------->DAG2 --ZAT14--------->TOE1(3)         --------->ANAC46                  --------->YAB1     --------->TOE1(3) ->ZAT14--------->TOE2(3)         --------->ANAC58               --------->WOX13(1)    --------->TOE2(3) ---HVH21  ---------->DOF2        --------->ANAC58     <-----------GT1     ---------->DOF2   cgcaaaacaaccataaagaatccaactttcttacacaaaccacacagtctcaagttttcacaataaacaatcacacataaagtctcaaactttaacaaaa  10210900                                                 <----------DOF2                                                <---------DAG2                                               <---------------AGL15                                               --------------->AGL15                                             <-----------GT1                                             <---------At5g28300                                            <-----------GT1                                         <---------ICU4                                       <<<<<<<                                     --------->YAB1                ------->TEIL      --------->ICU4                                    <---------ATHB12      ----------->GT1          --------->YAB1                   <-------TEIL   --------->WOX13(1)  <---------TOE2(3)         --------->WOX13(1)   tatgaacacagaagacaaatattcatggattagtatcaatcaatatttacccttttgagattgtaaatgagcctttcttcatcagtcatgagtttcttct  10211000                                               --------->ANAC58                                               --------->ANAC58                                               --------->ANAC46                                           <----------DOF2                                       <---------GLK1(2)                             ------>ZmHOX2a(1)                                  -------->P   --------->ANAC55(2)      ------>ZmHOX2a(1) <<TBF1        ------>ZmHOX2a(1) <-----------GT1                <----------DOF2  ------>ZmHOX2a(1)   tcaacttcttcgctctcctaatctctcttaacgtcttaccagactctttacgcattctactctcaactttgctcctcatactccttcctctcgatgttga  10211100                                                                                                -----                                                                                          <---------GLK1(2)                                                                                          <---------ARR14(2)                                                                                      <---------LBD16               ------>ZmHOX2a(1)                                                    --------->ARR14(2)               <----------DOF2                                                      <---------ARR14(2)              --------->TOE2(3)                 --------->ARR14(2)               --------->ANAC58            ------>MYB83              --------->At4g35610  --------->TOE1(3)     --------->ANAC46            ------>MYB46(1)         --------->MYB46(3)     --------->TOE2(3)     --------->ANAC58          --------->AtMYB61       --------->MYB52(1)    <-----------GT1  ------------>CBF --------->ARR14(2)     --------->HSFB2a(2)     <-------TEIL       <---------ARR14(2)       <---------YAB1 --------->LBD16   catacctcgagaccatcctttaaacacttgattcatcaacggctgaaacgaattcgaattaccttcacttgagttaccaatgctcgtaaccggattcgat  10211200                                                                  --------->TOE1(2)                                                                <---------ARR14(2)                    <------ZmHOX2a(2)                           --------->ARR14(2)                   <---------ARR11(3)                    <---------AHL20(2)                        --         --------->GLK1(2)                               --------->AHL20(2)                     -----        <---------ARR14(2)         ---------->DOF2   <------ZmHOX2a(1)                          <----        <---------GLK1(2)       --------->YAB1     <---------TOE2(3)                       ----------        --------->ARR14(2)  ----------->GT1    <----------DOF2  --------->GLK1(2)         --------->TOE2(3) ------>TGA1       --------->ARR11(3)       <---------TOE1(3)   ------->TEIL   <------------CBF<-----   gacgaaaccagattccttcaagatcaaaatcggataataaagttttaagctttgaggaattaaacgaatctgggagatgggtattggataaatctcaata  10211300                                              ------>MYB83                                              --------->MYB52(1)                                              ------>MYB46(1)                                             --------->MYB55(1)                                            <---------MYB111(1)                                            <---------MYB46(2)                                            <---------MYB59                                           <---------ANAC55(2)      ----------->GT1       <---------GLK1(1)                   --------->ANAC55(2)     <------ZmHOX2a(1) ------->YAB1                            <-----------GT1    <---------ARR14(2)                      - ---->YAB1      --------->YAB1  <---------ARR14(2)          --------->ARR14(2)                      < -----ICU4--------->YAB1        --------->GLK1(2)     --------->ARR14(2)                            < -->CBF--------->GLK1(1)        --------->ARR14(2)    <---------ARR14(2)     ---------->DOF2       -- ----ATHB12   --------->GLK1(2)<---------GLK1(2)     <------ZmHOX2a(1)----------->GT1           -----   atcagagagaaatcagaatcagaaatggagttagaatctgaagttacctaacacaggaatcggattggaggagagaaaataaagaccatttacaagtcct  10211400                                                                              ------>ZmHOX2a(2)                                                          <-----------ARR10  <------ZmHOX2a(2)                                                          <---------ARR11(3)<---------ARR11(3)                                                          --------->ARR11(3)--------->ARR11(3)                                                          --------->ARR14(2)<---------ARR14(2)                                                          <---------ARR11(1)--------->ARR14(2)                                                          --------->GLK1(2) --------->ARR14(3) -------->ZAT2                                           <---------CCA1(2)  <---------ARR14(3) ---------ZAT2                <---------ICU4         ----------->GT1       <---------GLK1(1) ---------At4g35610 ------>ZmHOX2a(1)    <---------HSFB2a(2)               --------->GLK1(1)        < --------->RAV1(1)  --------->HSFB2a(2)  --------->HSFB2a(2)              ----------->ARR10         - ->ZmHOX2a(1)       <---------HSFB2a(2)--------->At4g35610<---------ARR14(2)--------->AGP1  <--------   ccagcagtgtctcgagagactcctagagacaaacatttcgcttctgcaaacgaagtggcaaatctttcgaacaagagagatcttctcaagggtttcaggg  10211500                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                           ----------                                                                                          ------>NtERF2                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         --------->ANAC46                                                                                        <---------LBD16                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                    xxxxxxxxxxxxxxxxx                                                                                  --------->ICU4                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                                xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               <--------Pxxxxxxxxxxxx                                                                               ======================                                                                             xxxxxxxxxxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                             xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            <---------ZAT6--------->LBD16                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                            xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                           xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                          xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        --------->ZAT14xxxxxxxxxxxxxx                                                                        <---------ZAT14xxxxxxxxxxxxxx                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxx                                                                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<--                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(se3) ---                                                                 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxx                                                                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxx>smallRNA(se3)  ===                                                                 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(se3)   <--                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)---                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxx                                                                 xxxxxxxxxxxxxxxx>smallRNA(le3)  xxxx                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 *TSS xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxx                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxx                     --------->YAB1                              xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxx                 <---------AHL20(2)                              xxxxxxxxxxxxxxx>smallRNA(si3)<------                <---------AHL20(2)                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <---------AHL20(1)                               xxxxxxxxxxxxxxxx>smallRNA(si3)------                --------->AHL20(2)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->YAB1                                   xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxx               <---------ATHB12                           ===========================================      ------------>CBF     --------->AHL20(1)             ---------->DOF2xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------HSFB2a(2)  ----------->GT1       <---------HSFB2a(2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)x -------->HSFB2a(2)<------------CBF        --------->HSFB2a(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -LBD16    ------------>CBF<---------AHL20(1)   <------------CBF xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttttagaagacaatccaataaaattgtaatatatatgcttaacctctagagattgaacatcaaagtcgttgtagtatagtggtaagtattcccgcctgtc  10211600  Previous    Next  AGI:  At3g27550.1    Description:  group II intron splicing factor CRS1-related. similar to group II intron splicing factor CRS1-related [Arabidopsis thaliana] (TAIR:AT4G13070.1); similar to Os05g0145300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054631.1); similar to hypothetical protein OsI_017764 [Oryza sativa (indica cultivar-group)] (GB:EAY96531.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 10209018    to: 10211136    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g27555.1    Description:  pre-tRNA. tRNA-Asp (anticodon: GTC) Range:  from: 10211565    to: 10211636    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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