Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <------MYB83                                ----------->GT1                                <------MYB46(1)                               <---------TOE2(2)                               <---------TOE1(2)                          <---------MYB52(1)                          <--------P                         --------->At5g28300                        <---------MYB46(3)                     --------->MYB52(1)                        <---------ANAC58                     ------------>AtMYB77                      <---------ANAC58        --------->ANAC55(2)                    <---------WRKY38(1)                        <---------ANAC46        <---------ANAC55(2)                   --------->MYB46(3)                     <---------ICU4          ----------->GT1                   <---------ATHB12     <----------DOF2  <---------YAB1  --------->ANAC46            --------->AtLEC2--------->MYB52(2)         --------->YAB1    --------->ANAC58         --- ----------DOF2  --------->WOX13(1)  <-----------GT1  <-------TEIL       --------->ANAC58        <---   cacttttgactaccatgctcaatcaacggttagtaggtttaacttttacatagacattcatcatttcgtttaaacacacaaaaatggttatgtgattttg  10141200            ------->PIF5            <-------MYC3            ------->PIF4            <-------MYC4            <-------PIF5            ------->MYC2            ------->MYC3            <-------MYC2            ------->MYC4            <-------PIF4           --------->ANAC46           --------->ANAC58                       <---------SPL7           --------->ANAC58                     <------NtERF2           <---------TGA1a                 --------->ANAC58           --------->O2                    --------->ANAC58           <---------O2                    --------->ANAC46           --------->TGA1a                --------->RAP2.6(3)               --------->ANAC58           --------->ANAC55(2)       --------->ANAC46                       --------->ANAC58         <------------OsbHLH66       --------->ANAC58                     ---------->DOF2 ====================bZIP_DOF        --------->ANAC58           <---------TOE2(3) <----------DOF2                  --------->TOE1(2)             <---------TOE1(3)<---------ARR14(2) ---->TEIL------->TEIL    ----------->GT1--------->MYB52(1)     --------->DAG2   --------->ARR14(2) - ------CCA1(2)   <------ZmHOX2a(1)--------->TOE2(2)  <---------TOE1(1)  <----------DOF2            --   tatctttgaatgcacgtgaggaagaaaactgaaaaaactacgaaaacggcatcgttcgaggtcaataaggttgactttaagcaaatacttttgacaacta  10141300                    --------->TOE1(3)                        --------->PCF2              <-----------GT1                               <---------PCF2       <---------At5g28300   <---------TOE2(2)    --------->TOE2(3)            --------->YAB1      <-----------GT1       <---------MYB52(1)    --------->YAB1           <---------AHL20(2)     ---      <---------DOF5.7(2) ------->GAMYB          <---------YAB1       <---------AHL20(2) <---------AHL20(2)      --------->MYB52(1)<---------At5g28300    <-----------GT1     ----------->GT1      --------->AHL20(2)    <---------MYB52(2) <-----------GT1 ----------->RAV1(2) <------MYB46(1) --------->AHL20(2)<-------    <---------ATHB12--------->TOE2(3)  --------->At4g35610 <------MYB83   --------->AHL20(2) -------- ----------->CBF ----------->RAV1(1)   <---------At4g35610--------->MYB59 <---------AHL20(2)--------- ------->ANAC46 --------->ANAC46  --------->WOX13(1)   <---------REM1(1)  --------->AHL20(1)---------   aacccaattaacggtttcacaacattaaccgtatgttaatcacctgaaattacgataatgtaggtcccatagtaaatttaataaaaactatataatatct  10141400                                       <---------HSFB2a(1)                                     --------->ARR14(2)                                  --------->ANAC46                          <-----------HVH21                      --------->ANAC46 --------->HSFB2a(1)                      --------->ANAC58<---------GLK1(1)                      --------->ANAC58--------->GLK1(1)                --------->AHL20(2)--------->ANAC58                <---------ETT(1)          <---------AHL20(2)      --------->HSFB2a(2)      <-----------GT1   --------->YAB1   <-----------GT1--------->LBD16     --------->AHL20(2) --------->CBF  <---------AHL20(2)--------->LBD16      ----------->TBP --ARR11(3)    --------->AHL20(2) <---------HSFB2a(2)  <---------AHL20(2)         --------->REM1(1) ->ARR11(3)--------->AHL20(2)     --------->ANAC58   <----------DOF2         --------->ANAC58       - >CCA1(1)<---------AHL20(2)      <---------LBD16   ------>ZmHOX2a(1)------------>CBF             <--- >RVE1(1)--------->AHL20(2) <---------ALFIN1 ------>ZmHOX2a(1)<----------DOF2--------->ANAC58  ------   cacaatactaatttaaaataaatcacgccttcactcccggaactctcctcttcctctttaaatactttccgacaatagcaagcttcaacaaaaaaaaaaa  10141500                                                                             <--------HAHB4                                                                             --------->YAB1                                                                             <---------ICU4                                                                            --------->ICU4                                                                            <---------YAB1                                                                           ----------------------->TaNAC69(2)                                                                          --------->YAB1                            <---------AHL20(1)                            <---------ICU4                            <---------ARR11(3)                           --------->ICU4                            --------->ARR11(3)                           <---------ATHB12                           --------->RVE1(1)                           --------->YAB1                           --------->CCA1(1)                          <---------YAB1                         --------->YAB1                        <---------ANAC46             ---------                        <---------YAB1                         <---------ANAC58         --------->ANAC58 ------>TEIL          --------->YAB1                           <---------ANAC55(2)      --------->ANAC46 ------MYB52(2)    <----------DOF2   ------------>CBF          <---------ANAC58         --------->ANAC58 --->MYB52(1)------>ZmHOX2a(1) <----------DOF2                 --------->ANAC55(2)      --------->ANAC55(2)   cgaaccaaaaacttcctctctcttttataatatctttctctcaatctatgtttagaagaatggtttcgtattctaataatcattttgcatacgcatttct  10141600                                                                            <---------DOF5.7(2)                                                                           ----------->HVH21                                                                           --------->WRKY12                                                                           --------->WRKY38(1)                                                                           --------->WRKY45                                                                        <---------MYB46(3)                                                                 <---------ARR14(2)              ----                                                                 --------->ARR14(2)            ------                                                            <------ZmHOX2a(2)                <-------                                                           <---------ARR11(3)                <-------                                                           --------->AGP1 --------->DOF5.7(2)--------                    --------->ANAC58                       --------->ARR14(2)                <-------                    --------->ANAC46                       <---------ARR14(2)                <-------                    --------->ANAC58            <------ZmHOX2a(2)<-----------ARR10          <-------TEIL                  <---------ALFIN1             <---------ARR14(2)--------->GLK1(2)      <------------             ----------->GT1                   --------->ARR14(2)<---------ARR11(1)     <------------        --------->MYB46(3)                   --------->LBD16--------->CCA1(2)      --------->DOF5.7(2) >GLK1(1) --------->MYB52(1)               <---------LBD16 --------->ARR11(3)     --------->TOE2(3)   acttcttctaacaatcggtaacacgcttgcattttcttcgagtttgccggatcatgttcaagatccaaatctagtcgttgacgacgttaacaggtacgtg  10141700 ----------->GT1 ------>DOF2 ----->HVH21 --ANAC58                                              ----------->GT1 --ANAC58                                           <----------DOF2 ->ANAC55(2)                                       <---------ANAC58 --ANAC55(2)       <---------YAB1                  <---------ANAC46 --ANAC46        --------->YAB1                    <---------ANAC58                --------->ANAC46 ---AtSPL8      <---------YAB1                <-----------RAV1(1)               --------->TOE2(2) ---AtSPL3<---------YAB1                 <-----------GT1                        --------->TOE1(2)----   aaagagaaaattttgaatatgataatttgaagtttgatatatataacaatgttgcttttgtaaatataagtgatatatcatacatacgaagtagaaacaa  10141800                                                                                <---------ARR14(2)                                                    <---------YAB1              --------->ARR14(2)                                                   <-----------GT1             --------->At4g35610                                                  --------->YAB1               <---------At4g35610                                                  <---------ICU4            <-------TEIL                                                 --------->ICU4            --------->GLK1(2)        --------->AHL20(2)                       <---------ATHB12         <---------ARR14(2)        <---------AHL20(2)               <---------YAB1                   <---------GLK1(2)  <------MYB46(1) ------>DOF2                          <----------DOF2--------->ZAT6       --------->ARR14(2) <------MYB83   aatgcagcattttattccataaaaaatgtcttacaatattcttttgattcaattatcactatggctcacatttacagattcagttccccattagtgggtt  10141900                                                                                                   <x                                                                                                   <-                                                                                                 ----                                                                                                <xxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              <xxxxxx                                                                                              -------                                                                                             <-------                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          -----------                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               <---------HSFB2a(2)<--                                                                              <---------LBD16xxxxxxxx                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                      <------ZmHOX2a(1)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                    <---------TOE2(3)   <-----------GT1                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->AHL20(2)   <---------TOE1(3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->TOE1(3)      <---------TOE2(3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->TOE2(3)  <----------DOF2                  <---------TOE2(3) <xxxxxxxxxxxxxxxxxxx           <----------DOF2    <---------DAG2        ---------->DOF2<-------TEILxxxxxxxxxxxxxxxxxxxxxx   tttgtaaactaaactttaaatttaggaaaaccctttacggttttaccaaaaaaccaaagttaactatggttcatatagtctctggaggtttctatgtacc  10142000   <---------MYB52(1) xxxxxxxxxxxxxxxxsmallRNA(se3) --------MYB52(1) ----->ANAC46 xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(se3) >TEIL ----GT1 xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxx>smallRNA(i) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxx>smallRNA(i) xxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(fl3) ---->AtSPL8 xxxxxxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(i) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(l2) xxx>smallRNA(i) xxxxxsmallRNA(fl3) xx>smallRNA(s)                                                  --------->AHL20(2) xx>smallRNA(i)                                                  --------->YAB1 x>smallRNA(i)                                                --------->WOX13(1) xxxx>smallRNA(le3)                                         <---------YAB1 xxxx>smallRNA(se3)                                      <---------AHL20(2) xxxxxsmallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxsmallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ATHB12 ---------HVH21  <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxx>smallRNA(si3)<-----------GT1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxsmallRNA(fl3)      ---------->ID1             --------->ANAC58           --------->ANAC58 x>smallRNA(s2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ANAC58           --------->ANAC58      -   cgtcagttttgtctccgattttttttgttttttttcgcctctaaataactcaaacgcattttatcaatgaaattcttcagacgaaaaaaaaaactatgtc  10142100  Previous    Next  AGI:  At3g27400.1    Description:  pectate lyase family protein. Identical to Putative pectate lyase 11 precursor [Arabidopsis Thaliana] (GB:Q9LTZ0); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to Pectate lyase precursor (ZePel) (GB:O24554); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 10141560    to: 10144462    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version