Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->At4g35610  ---------->DOF2                                                                               ----- ------->ANAC58                                                                                <----- ------->ANAC58                                                                               <------ --------RAV1(2)                <---------YAB1                                            --------->DAG2 ->ZmHOX2a(1) ----------->RAV1(2) <---------GLK1(2)                                      ---------->DOF2 >ARR14(2)  ------>ZmHOX2a(2)------>MYB83        ------>MYB46(1)                    --------->AtLEC2 -GLK1(2) --------->ARR11(3) ------>MYB46(1)     ------>MYB83    ---------->DOF2 <-------TEIL<------ZmHOX2a(1) -ARR14(2)<---------ARR11(3)--------->WOX13(1)  --------->WOX13(1)           <---------TOE2(3)-------   caggcaaagtatgatcttctgagactaaaccaatctgattctcatgaaaccaatctgagattgaattcaaagtcgatctaatgttcatacaaaaaggatc  10082400         ----------->RAV1(1) --------->AtLEC2                                                                            -------- --------->ANAC58         <---------GLK1(2)                          ------->TEIL           --------- --------->ANAC58         --------->ARR14(2)                     --------->YAB1           <---------- ---->YAB1 --------->ANAC46                                ----------->GT1         <---------ANAC58 < -ZmHOX2a(2)              <---------ARR14(2) <---------YAB1<---------ICU4          --------->ANAC55(2) ---ARR11(3)          --------->LBD16      --------->YAB1  --------->YAB1          --------->YAB1   - -->ARR11(3)   <---------ARR11(3)    --------->ANAC46     --------->ICU4           <---------ANAC58 <   atcaggcaaacccacaaaatcatccccaaattcgcctaaacccaattctaattttctgtaatcgttataagaacctcgaagcctttcgtaattaacctcc  10082500                                                           --------->AHL20(1)     --------->GLK1(2)                                     <---------AHL20(1)    <---------GLK1(2)                                 --------->AHL20(2)    <---------ARR14(1)   --------->GLK1(1)            <---------AHL20(2) <---------TOE2(3)     <------ZmHOX2a(1)          --------->AHL20(2) ->TOE2(3)     --------->AHL20(2)           <------ZmHOX2a(2) >MYB46(3)    <---------ATHB12             --------->ARR14(2) -GT1------->TEIL      ============================HOX2a_HOX2a ---------DOF5.7(2)  <---------TOE1(3)     --------->AGP1 --------->AHL20(2) -------->MYB52(1)   <---------TOE2(3)     <---------ARR14(2) <---------AHL20(2) XXXXXXXXXXXXXXXXXXXXMIR397B   <---------GLK1(1) <---------ATHB12   --------->MYB52(1)   attaacgaatctctcaatgaattaaggaaatcgaaatctgaaacagatccaatgaaataaatatataaaaaaacggcgagagaatgaatgaatgaatgaa  10082600                              >>>>>>>>>>E2Fe                              >>>>>>>>>>E2Fc                              >>>>>>>>>>E2Fd                              >>>>>>>>>>E2Fa                             --------->LBD16                           <---------At4g35610                           <---------LBD16                   <---------ANAC55(2)                     <------ZmHOX2a(1)                   <---------ANAC46                   --------->HSFB2a(2)                   --------->ANAC55(2)       ---------->DOF2     <------ZmHOX2a(1)               --------->ARR14(2)      ---------->DOF2<---------HSFB2a(2)  >>>>>>>>>TBF1               <---------ARR14(2)  --------->DAG2 <---------ARR14(2)    >>>>>>>>>TBF1         --------->MYB52(1)--------->At4g35610    --------->ARR14(2) ------------------------>ANAC81  --------->YAB1 ------>ZmHOX2a(2)---------->DOF2<------ZmHOX2a(1)   >>>>>>>>>TBF1        ---------->DOF2   tgaatgagaaggaacgggatcgcgtaatcagcgggaaaaaggaaagagaaaggattcgagaggaagaggaagaagaagaagaaggaatcagagaaagagt  10082700                                                       ------->MYC2                           <------                                                       <-------MYC2                         <--------                                                       <-------MYC3                        --------->AHL20(2)                                                       ------->MYC3                        <---------ATHB51                                                      <---------ANAC58                     <---------ATHB12                                                      <---------ANAC58                     --------->ICU4                                                      <------NtERF2                        <---------AHL20(2)                                                      <---------ANAC46              <----------ID1                                                     ------>NtERF2                --------->YAB1                                                    <---------ANAC58          --------->AHL20(2)                                                    <---------ANAC58         --------->AHL20(2)                  <----------DOF2                  <<<<<<<<<E2Fc             <---------AHL20(2)                  <---------DAG2       <-------GAMYB<---------ANAC46         <---------AHL20(1)------            --------->At4g35610       <-----------RAV1(1)             *TSS   --------->AHL20(1)<-----      ---------->DOF2         <----------DOF2      <<<<<<<<<E2Fd--------->YAB1<---------AHL20(2)   ttcaattgcaaagaagatgactttttttagggcttttactctgttgcgattttggcgcgtgtctaactataacttctaatttaataagaacaaataatta  10082800                                      --------->ANAC55(2)                                    ------>ZmHOX2a(2)                                      <---------ANAC55(2)                                   <------ZmHOX2a(2)                                      <---------ANAC55(1)                                  <---------ARR14(2)                                 -------->HAHB4                                            <---------ARR11(3)                                 <---------ICU4                                            --------->AGP1                                 --------->YAB1                                            --------->ARR14(3)                                 --------->ATHB12                                          <---------ARR14(3)                                <---------YAB1                                             --------->ARR11(3)                                --------->ICU4                                             <---------GLK1(2)                                <---------ATHB12                                          <---------CCA1(2)                               <---------TOE2(3)                                          <---------At4g35610                             --------->AHL20(2)      <---------CCA1(1)                   ----------->ARR10                   <---------AHL20(2) <---------ANAC58              <----------DOF2   <-----------HVH21 ---YAB1          <---------AHL20(2)  <---------ANAC58    <---------YAB1             --------->ANAC46 -ICU4  <-----------GT1  <---------YAB1             <---------ARR11(3)         --------------->AGL15 --->AHL20(2)     --------->AHL20(2)<---------TGA2(2)<---------RVE1(1)         <----------DOF2 ----AHL20(2) <----------DOF2<---------AHL20(2)     --------->ARR11(3)      <-----------GT1--------->ARR14(2)   atgagttttttttcttctttttaaattctaattaatgattacgtctctaaattagatattttcattcactcttttttttttctttataagtcagatcttc  10082900                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                         --------->ARR14(2)                         <---------ARR11(3)                         <-----------ARR10                         --------->ARR14(3)                         --------->ARR11(3)                         <---------ARR14(3)        <---------ICU4   <---------ARR14(2)                                                  <-------     --------->YAB1     <------ZmHOX2a(1)                                       <-----------GT1<-----  --------->YAB1--------->ARR14(2) <---------AHL20(2)                   ------>ZmHOX2a(1)    -------- <---------AHL20(2)   <---------TOE1(2)                   <---------ANAC58    <---------WOX13(1)    < --------->AHL20(2)  <---------AtLEC2                     <---------ANAC58  --------->ATHB12 --------   taatttataatcttttcaaatttgcaggatcttctatttttttgggttattagttttattccttgtccataatcctattgattaactattgtattaagta  10083000                                             --------->ARR11(3)                                             <---------GLK1(2)                                        --------->YAB1                                       <---------YAB1   <---------------AGL15             <---------ICU4                                               ---   =================================================MADS_MADS ---------->DOF2                     <--   --------------->AGL15            --------->ICU4         --------->YAB1                        <---  ----------------->AGL1            <---------------AGL15 <---------AHL20(2)                     ---- --ANAC55(2)                        --------------->AGL15--------->AHL20(2)             --------->CCA1(2) ----AHL20(2)                      --------->ANAC55(2)<----------DOF2                  --------->ARR14(2) ->ANAC55(2)                     <-----------GT1  <---------ZAT18                      <---------ARR11(3) -----------GT1                  <---------AHL20(2)   <---------DAG2         ---------->DOF2     <--- --->GT1                  ----------->GT1    <---------ARR11(3) <---------TOE2(3)    ----------->ARR10   atttgccattttgtgaacaaaaattaagaagttatttacttattatagattttgcactttttaataaaggaatttttgttaaagggcaagatttgataat  10083100                                    --------->YAB1                                 --------->YAB1                                 <---------ICU4         <---------WOX13(1)     <---------AHL20(2)    <---------ANAC55(2)         --------->AHL20(2)            ------->TEIL                  <--------  <---------AHL20(2)            <---------ATHB51     <---------AHL20(2)                     <-------- ------>AHL20(2)         ----------->GT1             --------->AHL20(2)                     <-------- -------AHL20(2)      <---------MYB46(3)         <---------AHL20(2)                 <------MYB83 ------AHL20(2)      <---------WOX13(1)  <----------DOF2   <---------YAB1           <------MYB46(1) ----->AHL20(2)    --------->ATHB12<---------YAB1--------->AHL20(2)        <---------AHL20(2)   ----- ------AHL20(1)   <---------YAB1--------->ICU4  <---------AHL20(2)  <----------DOF2--------->MYB59   ttaattaagtgaatgacttcttgattgttgttaaataattatacttttattttaaatatttatgaatatacttttattttaaaatttggtattttcgtga  10083200                                                                                                    x                                                                                                    x                                                                                                   <x                                                                                                  <xx                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx       --------->AHL20(2)                                                                      <xxxxx   <---------AHL20(2)                                                                          xxxxxx   <---------AHL20(1)                                                                     xxxxxxxxxxx   --------->AHL20(2)                                                                    --------->YAB1   --------->AHL20(1)              <---------AHL20(2)            <-----------GT1         --------->ANAC46  <---------AHL20(2)              <---------AHL20(2)        --------->AHL20(2)           <---------ICU4  --------->AHL20(2)        --------->At4g35610          --------->TOE1(3)       <xxxxxxxxxxxxxxxxxxx -ANAC46          --------->MYB52(1)     <---------YAB1  --------->TOE2(3) --------->TOE1(3)   xxxxxx -ANAC58        --------->MYB46(3)--------->AHL20(2)  ------->TEIL     <<<<<<<ZML2      xxxxxxxxxxxxx -ANAC58<-----------GT1     <---------At4g35610   --------------->AtSPL8   --------->TOE2(3)  xxxxxxx ------>GT1   <<<<<<<ZML2<---------At4g35610  <-----------GT1   --------->AHL20(2)----------->GT1xxxx   gtaaataaattaactagaaccaatggaagcagcttattaaatgatgtttaactttgtacccttaaattaactagaacccttaaacagttaaacatcacta  10083300  Previous    Next  AGI:  At3g27290.1    Description:  F-box family protein-related. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G26000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14619.1); contains domain SSF52047 (SSF52047); contains domain PTHR23125 (PTHR23125); contains domain G3DSA:3.80.10.10 (G3DSA:3.80.10.10) Range:  from: 10080797    to: 10082770    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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