Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->At4g35610        --------->SPL7    --------------->AtSPL3    <-------TEIL    <---------------AtSPL8 --------->HSFB2a(1) --------->HSFC1(2) <---------HSFB2a(1) <---------HSFC1(2) ----->LBD16 -----HSFB2a(2)                                                                           ------>ZmHOX2a(2) ---->HSFB2a(2)                                                           <---------At4g35610 ----LBD16 <---------At4g35610                                 --------->ANAC46        --------->ATHB12 -->MYB52(1)                         --------->AHL20(2)        --------->ANAC58       <---------YAB1 ->P<---------------AtSPL3   <-----------GT1                   --------->ANAC58--------->CCA1(2)   ggaaaattcgtacagctaaaaccctaagataaaaccctataaaatgcagtagaagcaccaatttcaagaaactgagagatgatacacgatgatcggaata  10043900                                                                                            <--------                                                                                        ------>ZmHOX2a(2)                                                                                      --------->ARR14(2)                                                                                    <------NtERF2                                                                                   --------->LBD16                                                                                   ------>NtERF2                                                                                  <---------ANAC46                                                                                 <---------LBD16                                                                                <---------DEAR4(2)                                                                                <---------RAP2.3(1)                                                                               <---------DEAR3(1)                                                                               --------->ALFIN1 -----                                                                               --------->ATERF1(1)                                                                            <------ZmHOX2a(1)<-------GAMYB              --------->WRKY38(1)                                     --------->At4g35610   <--------           <---------MYB46(3)  ---------->DOF2                       ----------->HVH21<---------ARR14(2)   --------->HSFB2a(1)   --------->ANAC58                --------->DOF5.7(2)===================HOX2a_HOX2a   <---------HSFC1(2)--------->ANAC58               --------->MYB52(1)<---------At4g35610  <---------DEAR3(1)   <---------HSFB2a(1)   --------->ANAC58        --------->YAB1--------->MYB52(1)<------NtERF2  <----   --------->HSFC1(2)--------->ANAC58       ----------->GT1--------->MYB52(1)--------->ALFIN1<------- ---------->DOF2   ---------->DOF2        --------->GLK1(2)<---------DOF5.7(2)--------->At4g35610 ---   agagaaagttcgattgttgactaaagcaagaatcaaagagcgagaatcgaaaaataaccgataacgaagggctgatgaggagcggcgggatcgtcggtag  10044000                                                                                                    -                                                                                                   --                                                                                                   --                                                                                         xxxxxxxxxxxx                                                                                        --------->LBD16                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                      <---------LBD16                                                                                      <xxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     --------->MYB52(1)                                                                                     xxxxxxxxxxxxxxxx         <---------ICU4                                                              xxxxxxxxxxxxxxxx  ---------->DOF2                                --------->GLK1(1)                  xxxxxxxxxxxxxxxxx -MYB46(3)                                      <---------ARR14(2)                 <xxxxxxxxxxxxxxxxx ---->At4g35610                  <------ZmHOX2a(1)                                 xxxxxxxxxxxxxxxxxx -DEAR3(2)          --------->ANAC58            --------->ARR14(2)         <---------WRKY12       <-- -----At4g35610     --------->ANAC46           <------ZmHOX2a(1)          --------->WRKY18(1)  ------ --MYB52(1)         --------->ANAC58    --------->CCA1(2)      ---------->DOF2     <xxxxxxxxxxxxxxxxx ------>RAP2.6(2) --------->MYB52(1) ----------->ARR10<---------LBD16    <-----------HVH21xxxxxxxxxxx   ccgaaaaagaagaattactcaaacggaagtgagaaggagaagagacggaggatttcgacggagaagaaagaagaccgtcaaggcgaagaccggagaagtg  10044100       ------>NtERF2  <------NtERF2 -------->PCF5 ------->ATERF1(1) ---->NtERF2 xxxx>smallRNA(i) xxx>smallRNA(i) xx>smallRNA(i) xxxxxxsmallRNA(se3) xxxx>smallRNA(se3) xxxxx>smallRNA(fl3) xsmallRNA(i) >smallRNA(i) >smallRNA(s) xxxxxx>smallRNA(fl3) xxxxxxsmallRNA(se3)                   ------->TEIL                    --------->DAG2 xxxx>smallRNA(fl3)                <---------MYB52(1)       <---------DEAR3(1)                    --- -------ATERF1(1)             ------->GAMYB----------->RAV1(2)<------NtERF2                      <--- --->ALFIN1      ----------->HVH21<-------GAMYB            <---------LBD16     ----------->GT1 <----- xxxxxxsmallRNA(fl3)         --------->MYB46(3)  --------------------->WRI1  ----------->GT1   <----- xxxxx>smallRNA(i)         --------->WOX13(1)--------->HSFB2a(2)      ---------->DOF2      <---------   aggccccgatgccttctccatgacatagtcaatcgccgttgaatcttctggcattgagtttctcggcgaaggtaaaggagagtgaaaattgcgatttaag  10044200                                                              ---------->ID1                                                          ==========================================bZIP_DOF                                                          <---------O2                                                          --------->O2                                                          <---------TGA1a                                                          --------->TGA1a                                                         ------>MYB83                                                     -------->P  ------>ZmHOX2a(1)                                                     --------->ANAC58                                                     --------->ANAC58                                                   --------->MYB46(3)                                        --------->ZAT18  ------>MYB46(1)     ---------->DOF2                    <---------ZAT18 <---------ALFIN1 -------->GT1                           <---------ZAT14------->GAMYB ---ZmHOX2a(1)                     <---------GLK1(1) ===============MYC_MYB ----TOE2(3)              ----------->HVH21       --------->At4g35610                          <----- ----TOE1(3)              ----------->TGA1        <---------At4g35610                    <----------DOF2 -DOF2                <---------YAB1    --------->ZAT14=============MYC_MYB            <---------MYB52(1)   gagaaaaaaaaggaatcggaagtgatcagtgacgacgatttctgcacaattcagcaacccacttgtcctctctctctctcgctccctccgtcttttttaa  10044300                                                        <---------AHL20(1)                                                        <---------ICU4                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                        --------->AHL20(1)                                                     --------->YAB1                   <---------YAB1                                                     --------->AHL20(2)             --------->YAB1                                                --------->AHL20(2)                  <---------ICU4                                                <---------AHL20(2)                 <------ZmHOX2a(2)                                               --------->AHL20(2)                 <---------ARR11(3)                                           --------->AHL20(2)                     --------->ARR11(3)                                         ------>ZmHOX2a(1)                  --------->YAB1                               <---------AHL20(2)  --------->AHL20(2)    --------->YAB1           ---   *TSS                        --------->AHL20(2) --------->YAB1        --------->AHL20(2)        <-- ----AHL20(2)  ----------->ARR10        --------->TOE2(3)  <-----------GT1--------->AHL20(2)   ------   aatgttttttttgggagaagaaactcgaacgaattaaatactccttaaattaaaataatattttctgtttcaaaataaaaataagatcatgacaaaaaaa  10044400                          --------->ARR14(2)                                                        <    ---------->DOF2       <---------ARR14(2)                                                       --   <---------AHL20(2)  --------->YAB1                                <----------DOF2               <- ------>AHL20(1)      <---------ATHB12                             --------->At4g35610             <- -------AHL20(1)    --------->WOX13(1)                             <---------At4g35610          ----- --->AHL20(2) --------->AHL20(2)     --------->TOE2(3)  --------->TOE2(3)                      <-----   aatattaaaagtagatttatatcaatcaaaaccgctaaatctaaatccaaaatttcaacatttattgtctgcttaatttctatggacaattttgttttta  10044500                                                                                 <---------AHL20(2)      <---------TOE2(3)                                                         --------->YAB1     <-----------GT1                                                           --------->AHL20(2)    XXXXXXXXXXXXXXXXXXXX>MIR3932A/B                                         --------->AHL20(2) ---------AHL20(2)                                                          <---------AHL20(2) ------->AHL20(2)                                                          --------->AHL20(2)      <- --------AHL20(1)                                                       <---------AHL20(2)         -- --------AHL20(2)     ----------->GT1                                   --------->AHL20(2)        --- ---->YAB1           --------->DAG2                                <---------AHL20(2)----------->GT1 ----AHL20(2)       ---------->DOF2                  <---------TOE2(3) --------->AHL20(2)<---------AHL20(2)   ataaaatttacgatgacaaaaaaaaagtattaacagaaactatccaagtcttatttagattagaaatgttttatttaataaataaaaatgtttatttgat  10044600                                                                             --------->AHL20(2)                                                                     <---------TOE2(3)            ----------->GT1                --------->ZAT18          --------->YAB1     --------->At4g35610       --------->ANAC58                     <---------ICU4             <-----     <---------At4g35610       --------->ANAC58                  --------->YAB1           --------->AHL20(2) --------At4g35610          --------->ANAC46<<<<<<<<<<<<<<<<<LFY<---------AHL20(2)      ----------->GT1 ------->At4g35610        <-----------GT1  <---------ZAT18      --------->AHL20(2)    ---------->DOF2 ------>ALFIN1        --------->AHL20(2)  <---------ANAC46     --------->AHL20(2)   >>>>>>>>>GATA-1   gtgctgaagctgaaatgttattttttatatacgacgctaaaattgtgtacaatggaatgaaacaaattaataatgttttttatatagataaagaaaataa  10044700                                                                                         ------>MYB83                                                                                        --------->WOX13(1)                                                  --------->At4g35610                 --------->MYB46(3)                                              <-----------HVH21                      --------->ANAC58                                             <------MYB83                 --------->KAN4(2)                  --------->ICU4           <---------WOX13(1)            <----------TaMYB80                 <---------TOE2(3)       -------->HAHB4                  <---------KAN4(1)                --------->YAB1           --------->ATHB12                --------->HSFB2a(1)      <--                <---------ICU4          <---------YAB1                   <---------HSFB2a(1)    -----             --------->YAB1             --------->ICU4    ----------->GT1--------->KAN4(1)     ------            --------->AHL20(2)      --------->AHL20(2)  ---------->DOF2 <---------KAN4(2)------>MYB46(1)            <---------AHL20(2) --------->AHL20(2) <---------At4g35610   ---------->TaMYB80<---------ATHB12 ------GT1 --------->AHL20(2)  --------->YAB1<------MYB46(1)       ---------->DOF2   --------->ANAC58   caaactaattcaaattaataatgttgatgacaattaaaaaaaatgattggtcatatgagaaagtataaaaaaagaatattccaactcaaccaatcaagtg  10044800  Previous    Next  AGI:  At3g27190.1    Description:  uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative. similar to ATUK/UPRT1 (URIDINE KINASE/URACIL PHOSPHORIBOSYLTRANSFERASE 1), ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.3); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.1); similar to predicted protein [Physcomitrella patens subsp. pa Range:  from: 10040471    to: 10044303    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g27200.1    Description:  plastocyanin-like domain-containing protein. similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G07475.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14581.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) Range:  from: 10044759    to: 10045610    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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