Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------ICU4                                                  --------->YAB1                                        <------ZmHOX2a(2)                                       <---------ARR14(2)                                       --------->ARR14(2)    <---------At4g35610                --------->AGP1    --------->GLK1(1)                 --------->At4g35610                                ----------->GT1    --------->At4g35610           <-----------HVH21                               --------->At4g35610 <------NtERF2               --------->At4g35610 <-------TEIL                   --------->YAB1 ------ANAC58             ---------->DOF2    --------->ARR14(2)              --------->GLK1(1) ------ANAC58 <---------ALFIN1  --------->At4g35610                          <---------GLK1(1)   ctcggcatctccatccccactggccacaagaagcagcatcagatccaaatattcatcaccaaaaaccaaaaacgatgagaaatcagaagaagtgagaaaa  10030900                                                                             --------->At4g35610                                                                             <---------ZAT2                                         ----------->HVH21                   <---------At4g35610                                         <---------MYB52(1)                  --------->ZAT2                                        <---------SPL7                     --------->MYB46(3)                                       --------->RAP2.6(2)               ----------->RAV1(1)                      ----------->GT1 --------->RAP2.3(1)                ================RAV                    ---------->DOF2   <------NtERF2                  <---------ETT(2)                  --------->ETT(2)   ------>NtERF2                   --------->ETT(2)                  <---------ETT(2)  --------->ANAC46              <---------ANAC46               ------->GAMYB        --------->DEAR3(1)           <-------TEIL----------->RAV1(2)           --------->REM1(1)        <---------DEAR3(1)        --------->HSFC1(2)        <---------ETT(2)     <---------ATHB12                 <---------HSFC1(2)   ttagcaccagtctacaactgtcgaaagtgaaatcatcgacgccgtaacgcttgaagaagtctgaagcttcgtcgacaacagctggacgatggagattgaa  10031000            ------>ZmHOX2a(1)               --------->ANAC58            --------->LBD16                 --------->ANAC58          ----------->RAV1(2)             --------->CCA1(2)      ----------->ARR10           XXXXXXXXXXXXXXXXXXXX>MIR1886.1      <-------TEIL----------->RAV1(2)    <----------ID1      --------->SPL7            --------->LBD16   <---------ANAC46            --------->HSFB2a(2)   <---------ANAC58            <---------HSFB2a(2)                  <---------GLK1(2)     <---------YAB1   <---------ANAC58  <---------------------WRI1               <---------YAB1       <---------TOE2(3)   ctcttgcgtacatcctgagcacctgtgaaaattccagagaagagagacgaaatcgaatcgatttatcacagaaacttaagagattgagatttatcagaga  10031100                                                                                          <------NtERF2                                                                                         --------->LBD16                                                                                         ------>NtERF2                                                                                         <---------MYB46(3)                                                                                        <---------ANAC46                                                                                       <------NtERF2                                                                                      <---------RRTF1(1)                                                                                      ------>NtERF2                                                                                      <---------RAP2.3(1)                                                                                      <---------ERF1                                                                                     <---------RAP2.6(2)                                                                                     <---------RAP2.3(3)                                                                                     <---------RAP2.3(2)                                                                                     <---------RRTF1(3)                                                                                     <---------RRTF1(2)                                         --------->ICU4                              <---------ATERF1(2)                                --------->ATHB12                                     --------->ATERF1(2)                               <---------YAB1                                        <---------DEAR3(1)                              <---------TOE1(2)                                    <---------WRKY18(1)                              --------->SPL7                                      ----------->HVH21                            --------->TOE1(2)                 --------->STY1(2)   --------->WRKY12 --                            <---------SPL7                    <---------ZAT2    <-------GAMYB      --                            --------->ZAT18                  --------->ANAC58 <---------AtMYB61  ----                           <---------ANAC58  <<<<<<<<<<<<<<<<<LFY         <------NtERF2<---------LBD16                           <---------ANAC58  <------ZmHOX2a(1)<---------STY1(2)<---------MYB46(3)<---                          <---------------AtSPL3             --------->ANAC58<------ZmHOX2a(1)  <----   gagagacagagagagacagagagagagaagcgtacgattggaaatgaggacattggagagagcaagctagtgagtcggaggaggttgacggcgggagagg  10031200                                         <---------MYB46(3)                                        <-----------RAV1(2)                                       <------NtERF2                                      ----------->RAV1(1)                                     --------->ANAC46                                    ------->MYC3                                   <---------O2                                   --------->TGA1a                                   <---------TGA1a                                   ==================================================bZIP_DOF                                   ===============MYC_MYB                                   --------->O2                                   --------->ANAC58                                   --------->ANAC58                               <-----------HVH21                            <---------ZAT2<---------At4g35610                            --------->ZAT2--------->At4g35610                            <---------At4g35610                            --------->At4g35610   <---------WOX13(1)      ---------->DOF2     <----------ID1       <------ZmHOX2a(1)    --------->ICU4       --------->SPL7     ----------->HVH21 <-----------RAV1(2)<-------GAMYB           <---------SPL7                  <--    --------->DEAR3(2) ===========================RAV         --------->DEAR3(1)                  <-- ------->ANAC58   --------->DEAR3(1)<---------LBD16           ------->GAMYB                  <------- ------->ANAC58  --------->ATERF1(1)<-------MYC3--------->ATHB12 --------->DEAR3(1)          -------- ----->MYB52(1)  <------NtERF2----------->HVH21<---------YAB1--------->MYB46(3)             <-------- ------ARR14(2) <---------At4g35610===============MYC_MYB    --------->DEAR3(2)             --------- --ZmHOX2a(1)   --------->At4g35610--------->ANAC46       --------->MYB46(3)--------->DAG2--------->YAB1   aacggaagcgacgaagggagccgaagcaggagctgacacgcggcagttgatgattggaaaacgaccgccgaacgagaaaaggctcgacgaattcatcatt  10031300     --------->RAP2.3(1)   <------NtERF2     <------NtERF2        --------->LBD16    <---------ATERF1(1)  <---------ANAC46    ------>NtERF2        <---------ANAC58    --------->LBD16      <---------ANAC58   <---------DEAR3(1)   <------NtERF2   <---------ATERF1(2)  <---------LBD16   --------->ATERF1(2)--------->ALFIN1   --------->DEAR3(1) <---------DEAR3(1)  --------->ATERF1(1) ----------->HVH21  <---------LBD16    <-----------HVH21                                                   <------ZmHOX2a(2) <---------ATERF1(1) --------->LBD16                      <---------LBD16               <---------ARR14(2) -------ANAC58      <---------ANAC46         --------->YAB1--------->LBD16              --------->ARR14(2) -------ANAC58      <---------ANAC58        <---------ATHB12 <---------MYB52(1)  ----------->HVH21 --ICU4             <---------ANAC58        --------->AHL20(2)                   <---------ETT(1) ->ATHB12      <-----------GT1          ------------>CBF------>NtERF2           ------>ZmHOX2a(2)   < -YAB1      --------->ARR11(3)         --------->ANAC46----------->HVH21        --------->DEAR3(2) -- >ICU4*TSS  <---------ARR11(3)  ----------->GT1  <---------GLK1(2)        <------------CBF       <---   gctcgccggcgaaagatttactccgtggcgggaatggataaacccaataaatattctctgcccggtttgtatcacacattgatccgacccgatccataac  10031400                         <---------ARR14(2)                                      <---------YAB1                         --------->ARR14(2)                                 <---------ICU4         <---------AHL20(2)                                         <---------TOE2(3)         --------->AHL20(2)                                         <---------TOE1(2)    <---------TOE2(3)   ------>ZmHOX2a(1)                           <---------TOE1(3)              -- -------GAMYB   <---------TOE2(3)                                   <---------TOE2(2)         <------ ------->LBD16 <-----------GT1        <---------MYB52(1)    <---------MYB46(3)------>ZmHOX2a(1)    -- ------LBD16 <---------AHL20(2)<----------DOF2             <--------P----------->GT1  <---------AHL20(2)   ccggttgagatttatattatcgtttcctattcgcttatacgtttgtcatatactaagaggggttgtttcttaggttaatccttatgatttttttttgtca  10031500                                                                                  <---------RVE1(1)                                                  --------->AHL20(2)              <---------CCA1(1)                                   --------->AHL20(2)                            <---------ARR11(3)                     <---------AHL20(2)        ----------->GT1           --------->AHL20(2)            --------->ARR11(3)    --------->AHL20(2)                     <---------AHL20(2)  ------>ZmHOX2a(1) ------->ATHB12     <---------AHL20(2)         --------->YAB1           --------->AHL20(2)  --------- ---YAB1    <---------ARR11(3)  --------->YAB1----------->GT1           --------->YAB1<---------AHL20(2) ------->YAB1       --------->AHL20(2)        <---------YAB1--------------->AGL15--------->ARR11(3)   ttgattactaagaacatcttattttaatttttaaaaataaaaaacaaaatgataaaatgtctcttatataagaattaaaatgagatatttttatcctaaa  10031600                       -------->HAHB4                       --------->YAB1                      --------->ICU4                      <---------YAB1                    --------->YAB1                    <---------ICU4                   --------->ICU4                                                    <---------AHL20(2)                   <---------ATHB51                                                  -------->HAHB4                   <---------ATHB12                                                  <---------ICU4               --------->MYB46(3)                                                   <---------YAB1               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                --------->ICU4              --------->ANAC58             --------->AHL20(2)                    --------->ICU4              --------->ANAC58 ---------->DOF2                           --------->DOF5.7(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <---------MYB52(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           --------->TOE2(3)    ------>ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->YAB1             <-------TEIL<---------ICU4 >TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 ----------->RAV1(1)<--------HAHB4-----   aactaatataagagacaaccaataatgatgctctaaagtgtctaataaaaaatcgattaatagaacaacacattcgttaatgcataattattctcctagt  10031700                                                            --------->YAB1            --------->AHL20(2)                                                          <---------YAB1              <---------AHL20(1)                                               <---------AHL20(2)                     --------->ARR11(3)                                            --------->ARR11(3)                        --------->AHL20(1)                                            <---------AHL20(2)                        <---------ARR11(3)                                            <---------ARR11(3)                        <---------AHL20(2)                                            <---------AHL20(1)                       --------->AHL20(2)   --------->At5g28300                      --------->AHL20(1)        --------->AHL20(2) <---------AHL20(2)  ----------->GT1                           --------->AHL20(2) --------->YAB1   <xxxxxxxxxxxxxxxxxxxx ------>HVH21              <---------AtLEC2--------->AHL20(2) ----------->GT1   --------->YAB1      <   gacactgtaatttgtttttgtctatttttgtatgtcaaactcaaaatatattaatgcatcaatattgataaaaaaaatgtgatcaaaatatattaatgca  10031800  Previous    Next  AGI:  At3g27180.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO48997.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82187.1); contains domain RNA M5U METHYLTRANSFERASE FAMILY (PTHR11061); contains domain gb def: Emb|CAB12631.1 (PTHR11061:SF5); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) Range:  from: 10028074    to: 10031306    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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