Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             >>>>>>>>>>>>>>>>>LFY                           <<<<<<<<<<<<<<<<<LFY                          --------->RAP2.6(2) --------->ATHB51       --------->At4g35610 --------->YAB1         <---------At4g35610 -------->ICU4--------->ZAT2 ---------ATHB12    <---------REM1(1)                                                             --- ->At4g35610  <---------ZAT2--------->MYB46(3)                                                  ----- ->ZAT2       <---------At4g35610                                                           --------- --At4g35610<-----------RAV1(2)           <-----------GT1   <---------MYB59            ------>ZmHOX2a(1)   caataatcgatggctcagcttgttgaagcagccactggatagtttcaccatcagatttatgacccaattctctagtcaattgaaaaatcctagcagcaca  9959700                   <---------ETT(2)                   --------->WRKY12                   --------->DEAR3(1)                   --------->ETT(2)                                                    <---------GLK1(2)        --------->At4g35610                                                          <---------YAB1    --------->ANAC58         --------->TOE1(2)                               --------->ZAT2    --------->ANAC58   --------->AtMYB61                                     <---------ZAT2 ------->DOF2      --------->WRKY38(1)                                      ------>MYB46(1) ----->DOF2  --------->ARR14(2)      <---------ZAT14                        ------>MYB83 >At4g35610  <---------ARR14(2)     <----------DOF2<----------DOF2     <------ZmHOX2a(1)   aagagcaggcatccgaattcgtcgacctctaccttcgactttagtgtgtctgtctttgttagagcttctcttaggaccaagctggttctgattctgactc  9959800                                                  --------->TOE2(3)                                            --------->TOE2(3)                                            <----------DOF2                                         --------->ARR11(3)                                         <---------ARR11(3)                                    --------->HSFB2a(2)                                    <---------HSFB2a(2)                                         -----                                   ------>ZmHOX2a(2)                                         --------                                  <------ZmHOX2a(2)                  --------->GLK1(2)    --------->At4g35610                                 <---------ARR11(3)                 <---------GLK1(2)  <---------At4g35610                --------->ETT(1) --------->ARR14(2)         <---------MYB46(3)         --------->At4g35610           <----------DOF2       --------->ARR11(3)     --------->MYB55(2)            ----------->RAV1(1)      <------MYB46(1)            <---------ARR14(2)     <---------MYB46(3)            ------->GAMYB -      <------MYB83   --------->At4g35610--------->GLK1(1)   <------MYB83           ----------->RAV1(1)     --------->MYB59 <---------At4g35610<---------GLK1(1)   <------MYB46(1)        --------->MYB52(1)   ttcttgtttggttctttgtcggaagcagagaccacgatctggaaatctttaatctcagttgttggtttgcgattctcgtcggaaacaacagcagaagcag  9959900                                          <-------TEIL                                       <------MYB46(1)                                       <---------DEAR3(2)                                      <---------MYB46(3)                                     <---------ANAC46                                   <---------MYB46(3)                                   --------->MYB55(2)                                  <---------DEAR3(1)                                  --------->ALFIN1                                               <---            ------>MYB46(1)       <---------AtMYB61                                              <---          <---------MYB46(2)    <---------MYB46(3)                                           <-------          <---------MYB111(2)  <---------AtMYB61                                    <-------TEIL <---          --------->MYB46(3)   <---------DEAR3(1)                                   ------>ZmHOX2a(2)          <---------MYB111(1)  --------->ALFIN1      <------MYB46(1)               <------ZmHOX2a(2)          --------->AtMYB61  --------->MYB55(2)      <------MYB83           <---------ANAC58 <-------          <---------MYB59    <---------MYB46(3)   >>>>>>>>>SARD1            <---------ANAC58---------         --------->ANAC46   --------->ALFIN1      >>>>>>>>>CBP60g          <-------TEIL     <--------        -------->P          <---------AtMYB61--------->ANAC58             --------->ARR11(3)---------     --------->At4g35610    <---------DEAR3(1) <---------ARR11(3)      <---------TOE2(3)    --------- ---->At4g35610            <---------ABI4(1) --------->ANAC46 ----------->HVH21   --------->ARR14(2) ->At4g35610------>MYB83 <---------DEAR3(1)  --------->ANAC58 ----------->TGA1    <---------ARR14(2) -------->YAB1          <---------LBD16<------MYB83 --------->MYB59    --------->MYB59      <--------   catcatcatctaccaaaccctgatttcgcggtggtggtggtgggttcaagaaatttggtacttggtgacgatttaggttcttgggatccatcgaagcttg  9960000   --------->ALFIN1 <---------ANAC46 <---------ANAC58 <---------ANAC58 <-----------RAV1(1) ------ANAC58 ------ANAC46 --ANAC58 ------ANAC58 --ANAC58                           --------->YAB1 >HSFC1(2)                      <---------AHL20(2) -ZAT2                          --------->AHL20(2)          <---------TOE1(3)                  ------ >HSFB2a(1)                    <---------AHL20(2)           <---------TOE2(3)                -------- >ZAT2             <---------HSFB2a(2)   <---------GLK1(2) --------->MYB52(1)       ----------->GT1 -HSFC1(2) <---------ZAT14     --------->AHL20(2)      --------->WOX13(1)         <----------DOF2   cttgtgtggggacttcagggtccagagacttaatttaatcaaaaattctcttggattcaattaagggtttcagaattgtgacgactttgtaaaacaaaag  9960100                                                                      <---------REM1(1)                                                                   --------->LBD16                                        --------->ICU4           ------>ZmHOX2a(2)                                     <---------AHL20(2)          =========================HOX2a_HOX2a                                    <---------AHL20(2)          ==========================HOX2a_HOX2a                                    --------->AHL20(2)          <------ZmHOX2a(2)                                   *TSS<---------TOE2(3)       <---------ARR14(2)          ----------                             <-----------GT1                   --------->ARR14(2)        ---------->DOF2 --->DAG2                 ---------->TaMYB80                   <---------ARR11(3)  <------ZmHOX2a(1) -->DOF2           <----------DOF2------->TEIL                 --------->ARR11(3)  ==================   gtatcgagtttttttttttttctttgggaatttacgaatttaatgtttaaaaaaaaacccagtaagatcccgatgtagaatttgaggagaataaagaaaa  9960200                  <------------CBF             --------->HSFB2a(2)                                                    <---------AHL20(2)             <---------HSFB2a(2)                                                <----------DOF2            ------>ZmHOX2a(2)      ----------->GT1                        <----------DOF2         <--     <----------DOF2 ----------->GT1                                    ---------->ID1 <---------YAB1 ->GT1    --------->ARR11(3)---------->DOF2   <----------DOF2 <----------DOF2 ---------->ID1   <----- ==================HOX2a_HOX2a   --------->CCA1(2)---------->DOF2<------------------------ANAC81  <--   aatgtttcttttgatctcgaaattggtcaaaaaagaaatgagaaaacactttaaaagtatgagactttagttttgtctttttcttttttattcttgttta  9960300        <------MYB83        <------MYB46(1)       --------->MYB111(1)       <---------MYB46(3)       --------->MYB59       <---------------AtSPL3                                      <---------ATHB12       <---------AtMYB61                                          ------>MYB83       --------->MYB46(2)                                         ------>MYB46(1)       --------------->AtSPL8                                   --------->MYB46(3)                ---       <---------------AtSPL8                                   <---------MYB46(2)    --------------- -------DAG2        --------->MYB52(1)                         --------->ANAC46       <-------------- ------GT1     --------->AHL20(2)  <---------ANAC58  <---------TOE2(2)               ---------------- --------DOF2<----------DOF2       <---------ANAC58  <---------TOE1(2)      --------->ICU4      -----   ctttttggtttggtactttaaataacagagagagatagcgagtgagtgagtctcataggtttctcaccaaacaatgcaatttttaagaccataaacagca  9960400        --------->ANAC46                                                                --------->bZIP60(2)      --------->MYB52(1)                                                              <---------ALFIN1 -------->GT1                                                                      ------->GAMYB >AGL15 <----------ID1 ---------->DOF2                                            <------------AtMYB77 -AGL15 --------->ANAC58      <---------ZAT6         <---------AHL20(2)           --------->MYB46(3) ->AGL2 --------->ANAC58--------->DAG2      <----------DOF2                      --------->At4g35610 ----->DOF2      ---------->DOF2----------->HVH21   --------->AHL20(2)         --------->MYB46(3) ---   aagtaacaaaacgacacataaaagaaaaagtagtgtgaccgtttcactttcacatttaatccaaaggtaattgagagtctaacaactgccacttcatttc  9960500                    ------>ZmHOX2a(2)                   <------ZmHOX2a(2)                  ------->TEIL                  <---------AGP1                  <---------ARR14(2)               <---------ANAC55(2)               --------->ANAC55(2)                         <---------GLK1(1)                 <-------               <---------ANAC46                  --------->AHL20(2)                          <-------             --------->MYB52(1)                  --------->YAB1                           <---------AHL20(2)      <-------TEIL--------->ARR14(2)            <---------YAB1                           --------->AHL20(2)     --------->CCA1(2)                        <--------HAHB4                       --------->TOE2(3)    <---------ARR14(2)   --------->ARR11(3)   <---------ICU4                      ----------->RAV1(2)    --------->ARR14(2)   <---------ARR11(3)  --------->ICU4--------->GLK1(1)    <<<<<<<<<GT-1-------- ------>ZAT6----------->HVH21     <-----------GT1<---------AHL20(2)             <-----------GT1    <-   ccactagatacacagtgacggatctaaaatctatttttacatggggcataattatatgtggaaatcaggtttcaagttagatttacctgaattttatggt  9960600  Previous    Next  AGI:  At3g27010.1    Description:  AT-TCP20 (ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF (TCP)-DOMAIN FAMILY PROTEIN 20); transcription factor. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G41030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49044.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 9958613    to: 9960135    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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