Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                               <----------DOF2                                    ---                                       <-----------GT1                                         ------       <-----------GT1                ---------->ID1                                       --------->STY1(2) --------AHL20(2)        <-----------GT1  <----------DOF2                    <---------ATHB12  ------ ------>AHL20(2) <-----------GT1  <----------DOF2<---------AHL20(2)  ---------->DOF2       <---------STY1(2)   ttttatagtttacattttcttacatttttgccatttctttttctcttttcttttattgtttcagtaaaacttatagccaataagttttatagtagctagg  9907600          <---------YAB1       ------>ZmHOX2a(1)   ------->TEIL                             --------->YAB1   --------->ARR14(2)                      <---------ATHB51   --------->GLK1(2)                       <---------ATHB12   <---------ARR14(2)                  --------->MYB46(3) ---------MYB52(2)                   --------->MYB52(1) -------->MYB46(3)                 <---------MYB52(2)                           <---------ANAC58 ------>MYB52(1)                  <---------At4g35610                --------->MYB46(3)   ----------- --->ANAC58                       --------->STY1(2)    ------>ZmHOX2a(2)        <---------ANAC58 --->ANAC58--------->YAB1 <---------ICU4 --------->WOX13(1) <----------DOF2  <---------CCA1(2)    ---   caacgaatccttatgaaaatagattccatcatctctagctaaccaattatacgatgatccatctttggcgaacaaacctatagcttgatatgcagtaata  9907700                                                            --------->DAG2                                                           ---------->DOF2                         --------->AHL20(2)             --------->LBD16             <---------MYB59                       <----------DOF2             <---------SPL7                  <---------bZIP60(1)                       ------>ZmHOX2a(1)         <---------MYB52(1)                --------->bZIP60(1)                 --------->MYB59                --------->LBD16           --------->At4g35610             --------->YAB1                    <---------ANAC58  <------MYB46(1)   --------->TGA2(1) >GT1       <---------YAB1                     <---------ANAC58  <------MYB83  <---------WOX13(1) ------>TOE2(3) <---------ICU4          XXXXXXXXXXXXXXXXXXXX>MIR839       <---------At4g35610   cctctataacgcttataatcaggtcctttatataagttgcaccaaaattccgtcgttccccaaaagttggtcttgaagctgaatgacataacttctccaa  9907800                                                        <---------YAB1                                                       --------->KAN4(2)                                                      <---------KAN4(1)                                                      <----------TaMYB80                                                      --------->GLK1(1)                                                      <---------GLK1(1)                                                      --------->KAN4(1)                                                     <---------ARR11(3)                                                     --------->ARR11(3)                             <                   <---------ARR11(3)                <---------ARR14(2)                            <-            --------->ANAC46                         <---------KAN4(2)                             <-          <-----------GT1                            --------->ARR14(2)              <---------WRKY18(1)     <---------CCA1(1)                            <---------TOE2(3)             <---------YAB1     --     <---------RVE1(1)                      ------->TEIL--------->GLK1(2)<---------AHL20(2)      <---    <---------ARR11(3)              <-----------GT1 <------ZmHOX2a(1)    --------->AHL20(2)      <---    --------->ARR11(3) <---------MYB52(1) <---------ZAT18               --------->AHL20(2)    -------   ttttgagatattttacaccaatatcgttgtttttggatttacaatgcaccttgaggatattcttgtttttgggatttaattcattcttgaccgtaatcgt  9907900           --------->ARR14(2)           <---------ARR14(2)         --------->LBD16        <---------ANAC46        <---------ANAC58       <---------LBD16       ---------->DOF2     <-----------GT1      --------->ANAC58 ----------------------->TaNAC69(2) ---------RVE1(1)         --------->ANAC58 --------GLK1(2)          --------->AtLEC2 --------ARR11(3)       --------->YAB1 ------->ARR11(3)      <---------ATHB12            --------->ATHB12 ------TOE1(2)       --------->YAB1    ----------->RAV1(1)             <---------ANAC58 ------TOE2(2)--------->ANAC46      ----------->RAV1(1)                <---------ANAC58        <----- -->YAB1<---------ANAC58<---------ICU4--------->MYB46(3)        <-----------GT1            <---------AHL20(2)   agatttttttccgtatacatcactaatcatgcaaagcccaacaacaaatagaaagattgagaggtttttcatttcttggtatttgtttttgaattttttg  9908000                                                                                                    <                                                                                                    <                                                                                               ------                                                                                               ------                                                                                  --------->ICU4<----                                                                             ----------->GT1   <-----                    <-----------GT1                                         <---------YAB1     <-----                  <---------AHL20(2)                                       <------------CBF    ------                  --------->AHL20(2)                                      --------->YAB1      <------            <------MYB83                                                  --------->ATHB51    <------            ----------->GT1                                               -------->ATHB1      <------      <-----------TBP                       ----------->GT1              <---------YAB1       -------    --------->AHL20(2)                      <---------ZAT6             --------------->AGL15  <------    <---------AHL20(2)             <---------YAB1                      <---------------AGL15--------- ------GT1  <------MYB46(1) --------->MYB52(2)                         ==============================   ctatatttatttgtaggtaattaaactagttagttttatgtttgaagtgttatatacacacatacttgtatttctattattgtaaatattctattaataa  9908100      --------->MYB46(3)      <---------MYB52(2) ----------->GT1 ---------TOE2(3) ---------TOE1(3) -->HAHB4                   <------------CBF --->ATHB51                <---------ICU4 --------CBF               --------->ATHB12 ---ATHB1                  -------->HAHB4 ----ICU4                 <---------YAB1 --->ATHB12               --------->ICU4 ---YAB1                <---------ICU4 ---AHL20(2)            --------->YAB1                                         <-----------GT1 ---------AGL15        --------->ICU4                 <------------CBF  <---------ICU4 -->ICU4              --------->AHL20(1)      <---------ARR11(3)       --------->ICU4 ---ATHB51 ------------>CBF<--------ATHB1     --------->ARR11(3) --------------->AtSPL8 >YAB1<------------MYB.PH3(2)<---------WOX13(1) ------>ZmHOX2a(2)<---------------AtSPL8 =========MADS_MADS  --------->YAB1         <---------ATHB12  <---------AHL20(2)             <-------   ttgaggtaacaaactcaatacaaaaataatgattgatagttgacaaatgatctgtgtattggatttttttgtactaattagttacagatttaagtctttt  9908200                                                                                                   --                                                                                             <-------                                                                                         <---------AHL20(2)      --------->AHL20(2)           --------->LBD16                 ----------->GT1      <---------AHL20(2)    --------->YAB1      <-----------GT1                      <---------YAB1         <---------AHL20(2) ---DOF2        <------------CBF <---------LBD16    <---------AHL20(2)       --------->GLK1(2)    ---   tgctaaaaataaacatgttattgtttatacttacttccgcatcgtttatagtattttttagttatgtttttgtaaaaacaatctattttttttatttagt  9908300                                                                                <---------AHL20(2)                                                                            <---------ICU4                                                                           <---------YAB1                                                                         -------->HAHB4                                                                         <---------ICU4                                                                         --------->YAB1                                                                        <---------YAB1                                                     ----------->GT1    --------->ICU4     <---------RVE1(1)                          <---------ANAC58    <---------AHL20(1)             <- ------->DAG2                                   <---------ANAC46    --------->AHL20(2)             -- --AHL20(2)<-----------GT1                      <---------ANAC58    <---------AHL20(2)       -------- ------->DOF2                         ------->TEIL<---------MYB52(1)--------->AHL20(1)      ---------   taaagtgatattttcacattttcaatataagaaatatatgtatatatgtttcgtttagttaatcttacaataaaatgattatttcattgttgtattgata  9908400                                                                     <---------SPL7                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                   --------------->AtSPL8                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                    --------->AHL20(2)           ------>MYB83                             <---------AHL20(2)     <---------ZAT2   --------->YAB1                                   <---------AHL20(1) --------->SPL7 --------AHL20(2)                             --------->YAB1   <----------DOF2 ------->AHL20(2)                       --------->ZAT6         <---------DAG2 ->YAB1    ------>MYB46(1)           ----------->HVH21    <-----------GT1  --------->ZAT2 -->GT1  <---------MYB59      ------>ZmHOX2a(1)     --------->YAB1 --------------->AtSPL3   atttatcaaaaccaaactaaaccgtgttcgtccttggctctgacactatcacaataaaattatccctttttcgtaccagcttgttttatagataacttga  9908500  Previous    Next  AGI:  At3g26880.1    Description:  self-incompatibility protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28305.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63635.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 9907571    to: 9907972    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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