Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             ------->TEIL                              --------->GLK1(1)                         --------->ANAC58                         --------->ZAT14                                --------->ANAC46                         <-------TEIL                                   --------->ANAC58                         <---------ZAT14 --------->GLK1(1)             --------->SPL7                        --------->ALFIN1 <---------GLK1(1)           --------->TOE1(2)                       <---------------------WRI1 --------->MYB52(1)--------->AtMYB61         <------   ttgtttatgaagttcacatagtgaaggtgcagagttctaagagatttcagacaaactgaagaagggacaaccatacgaaccaaaaacttgacttccaagg  9849500                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     <-------TEIL                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              ========================HOX2a_HOX2a                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         --------->DEAR3(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        --------->DEAR3(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)                                        --------->MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       ------->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               >>>>>>>>>RAP2.2                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->ARR11(3)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------CCA1(1)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                    <---------GLK1(1)                              <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(s)           --------->CCA1(1)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->GLK1(1)                             --------->LBD16xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------RVE1(1)                           <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i)<--------                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(s)<---------ARR11(3)                     --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->MYB52(1)                     --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->RVE1(1)         <-----------GT1<----------DOF2xxxxxxxxxxxxxxxx>smallRNA(i)        --------->AHL20(2)       <         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(1)------>ZmHOX2a(2)     --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ZAT6 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      -- <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------- ---TOE1(2)     --------->ZAT18 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------YAB1  <---------ARR11(3)   tatctagtgtttcacaattgcacaagctttcaggaaatatgaaccgtcctctaggtgcaatctgatccagtatgaaaattaatggaagatatctaaagtt  9849600                                               <---------AHL20(2)                            --------                                       --------->AHL20(2)                                    <-------                                       <---------AHL20(2)                                   ---------                                     --------->AHL20(2)                                     <--------                                    --------->AHL20(1)   --------------->AGL15              ---------                                    <---------AHL20(1)------->TEIL                          <--------                              --------->YAB1 --------->AHL20(2)                         --------->AHL20(2)                             <---------YAB1  <---------AHL20(2)    --------->YAB1       <---------AHL20(2) >smallRNA(si3)         --------->AHL20(2) --------->AHL20(2)    <---------YAB1        <---------AHL20(1) -TOE2(3)       <-----------GT1  --------->AHL20(2)  <---------CCA1(2)                 --------->AHL20(2) ---------AHL20(2)     --------->AHL20(2)  <---------AHL20(2) <---------AHL20(2)       <---------AHL20(2) ------->AHL20(2)      <---------AHL20(2)--------->AHL20(2)   <---------YAB1<---------AHL20(2) >DOF2  <---------ARR11(1)--------->ICU4 <---------AHL20(2)  <---------AHL20(2)  <-----------GT1   atttaatccaaatctatttttctaaataattttgataatatatatatatatatatgtatctatttttattaatagtttttattttacaatttaatttaat  9849700                                                        <---------MYB46(3)                                                        <------MYB83                                                        ----------->GT1                                                       <---------DEAR3(1)          --------->AHL20(2)                         <-------GAMYB          --------->YAB1                            <---------ANAC46          <---------AHL20(2)                --------->CCA1(2)         <---------ATHB12                  <---------ARR14(2)         <---------ATHB51                  --------->ARR14(2)  <---------AHL20(2)         --------->ICU4                  <---------MYB46(3)    --------->AHL20(2) ->AHL20(2)                           <---------MYB46(3)<------MYB46(1) --AHL20(2) <---------YAB1           <---------AtMYB61 <---------AtMYB61 >AHL20(1)-------->ATHB1         <-------TEIL      <------NtERF2<---------AHL20(2)   <-----------RAV1(2) -AHL20(1)--------->ATHB51      <<<<<<<<<<<<<<<<<LFY<---------DEAR3(1)      --------->ARR14(2) >AHL20(2)<---------ICU4      <---------At4g35610 <---------RAP2.3(1)       <---------ARR14(2) -AHL20(2)<--------HAHB4      --------->At4g35610<---------RAP2.6(2)     <---------ANAC46          --   aagtttatgcaattatttttgtatttttgtttagctacattggtggatatagcggcgttggtgaataaaattccagcgtatacaaggccagacgttttat  9849800              ------------>CBF            --------->PCF2                                               ------>ZmHOX2a(2)            <---------TCP16(1)                                          <------ZmHOX2a(2)            ------>NtERF2                                              <---------ARR11(3)          --------->ATERF1(1)                                          <---------AGP1          <---------ATERF1(1)                                          --------->ARR11(3)          <------NtERF2            <---------ZAT18                     --------->AGP1         <---------ATERF1(1)     <---------At4g35610             *TSS  --------->ARR14(2)        --------->ATERF1(1)      --------->At4g35610          --------->O2     ------->GAMYB      <-----------GT1                       --------->TGA1a  --------->MYB52(1)   <-----------GT1         <---------WRKY38(1)     <---------ARR14(2) ---->ZmHOX2a(1)      <---------AHL20(2)       <---------WRKY12 <---------CCA1(2)         --------->ALFIN1   cctataacgggccgggcccaatatttaaaccttctagctcacacagaggtcaaagtttttgctctcgtctctagatctgtagaagtagaatggtggagcc  9849900                             --------->ARR11(3)                          ---------->DOF2                          --------->DAG2                          <----------DOF2                 ------>ZmHOX2a(2)  <---------ANAC58              <---------DAG2           <---------bZIP60(1)      <---------ANAC58          --------->ZAT18                      --           <---------ANAC46  <---------ARR11(3)               <---------ZAT18                      --           --------->bZIP60(1)  <----------DOF2        <---------HSFB2a(2)                         --  *TSS--------->O2       ---------->DOF2 <<<<<<<<<TBF1 --------->HSFB2a(2)                    <------   atcgagccatgtgatgtgatcgaaacaaaaagctctttgcttcttcttcgtccatttctcgtagcacacttttcacaaagaagatgggttcttcacaatc  9850000                                               >>>>>>>>>TBF1             ============================                                  <---------At4g35610                    <------ZmHOX2a(2)                                <---------ARR14(2)            <---------ARR11(3) ------->ANAC58              <---------------------WRI1 >>>>>>>>>TBF1  <---------At4g35610 ------->ANAC46        >>>>>>>>>TBF1      <---------ATHB12    --------->ARR11(3)  --------->ANAC58 ------->ANAC58     >>>>>>>>>TBF1 --------->At4g35610>>>>>>>>>TBF1     --------->At4g35610 -----ARR10      >>>>>>>>>TBF1 <------ZmHOX2a(1)  >>>>>>>>>TBF1 <---------ICU4    --------->ANAC58  -   tacgcaaatggaagacgaagaagaagaagaagaggaaactgacaatgaagaagaagaagaagaagataatggcagatcaaacacaagacaattagacaat  9850100                >>>>>>>ZML2                --------->HSFB2a(2)                --------->HSFC1(1)                <---------HSFC1(1)                <---------HSFB2a(2)             --------->ARR11(3)           <---------HSFB2a(1)                            --------->REM1(1)           --------->HSFC1(2)                         <---------At4g35610           --------->HSFB2a(1)                 --------->ANAC58           <---------HSFC1(2)                <-----------GT1         ---------->DOF2                    ----------->HVH21                                      <-     ---------->DOF2                       <-----------HVH21                                       <- ------>ZmHOX2a(1)                        --------->bZIP60(2)<---------ALFIN1    --------->At4g35610 =======HOX2a_HOX2a<<<<<<<ZML2       <-----------GT1  --------->At4g35610      --------->YAB1      <- -------------->AGL15      ----------->RAV1(2) --------->ANAC58       --------->AtMYB61   --------->SPL7   ctcctagtaaagaaagttctagaacaagagcctgagatgttaccatgtcacgcttcagcttcaccactctcaccacaactatcatctctcggtactccaa  9850200                                                            --------->DEAR3(1)                                                            --------->RAP2.3(2)                                                            --------->RAP2.3(3)                                                            <---------ANAC46                                                           --------->DEAR4(2)                                                        <---------MYB55(2)                                                        --------->MYB46(3)                                                        <------------AtMYB77                                                        --------->ATERF1(1)                                                       <---------ATERF1(1)                                                    <------NtERF2                                                    ------>NtERF2                                                    --------->LBD16                                                   --------->RRTF1(3)                                                   --------->RAP2.3(3)                                                   --------->ANAC58                                                   --------->RAP2.3(2)                                                   --------->RAP2.6(2)                                                   --------->ANAC46                                                   --------->ANAC58                                                   --------->DEAR3(1)                                                   --------->RRTF1(2)                                                  --------->RAP2.3(1)                                                  <------NtERF2                                                  --------->ATERF1(1)                                                  --------->RRTF1(1)                                                  --------->ERF1                                                 <---------ATERF1(1)                                                 ------>NtERF2                                                 --------->ABI4(1)                                                --------->ANAC46                                                <---------ALFIN1                                                --------->RAP2.3(2)                                                --------->DEAR3(1)                                                --------->RRTF1(3)                                                --------->RRTF1(2)                                                <---------ATERF1(2)                                                --------->RAP2.6(2)                                                <---------DEAR3(1)                                                --------->ATERF1(2)                                                --------->RAP2.3(3)                                               --------->RAP2.6(1)                                               --------->ERF1                                               --------->RAP2.3(1)                                               --------->ORA47(2)                                               --------->ATERF1(1)                                               --------->RRTF1(1)                                              ------>NtERF2--------->RAP2.3(1)                                              <---------ATERF1(1)                            ------>ZmHOX2a(1) <---------At4g35610                          ====================HOX2a_HOX2a------->GAMYB                          ------>ZmHOX2a(2)   --------->At4g35610                         =====================HOX2a_HOX2a--------->DEAR3(1)                      <---                         <------ZmHOX2a(2)    --------->ABI4(1)                       <---------At4g35610                        --------->ARR14(2)    --------->LBD16                  <---------ANAC58 <----              ---------->DOF2          ------>ZmHOX2a(1)--------->DEAR3(2)     <---------ANAC58 ----- --------ANAC58         --------->ARR11(3)   --------->DEAR3(1) <---------CCA1(2)   <---------ANAC46 --------ANAC58         <---------ARR14(2)   --------->ANAC46------>NtERF2   <---------ARR14(2) ----- --------ANAC46      <---------------------WRI1--------->DEAR4(2)        --------->HSFB2a(2)    <----   ggcttggaccatcgattaaagtctgggatccttacaacgtcctctctccgccgccgcaaccgccgtctatcttctctcgaatcgtgtctggtgatgaaga  9850300     ----------->HVH21    <-----------HVH21                                                     <---------At4g35610 --------->At4g35610                                                      --------->At4g35610   <---- <---------ZAT2                                                       <---------MYB46(3)       <----- --------->ZAT2                                  --------->YAB1    <------MYB83                <----- <---------At4g35610                             --------->TOE2(3) <------MYB46(1)   <---------ZAT2 ---ZmHOX2a(2)                                   --------->TOE1(3)<---------MYB46(3) <---------At4g35610 -----ARR11(3)                             --------->YAB1         <---------AtMYB61  --------->At4g35610 ---->ARR11(3)                             ------>ZmHOX2a(2)     <---------WOX13(1) ------->TEIL----- ---->ARR14(2)                           <---------ARR11(3)    --------->ATHB12  <---------REM1(1) -----ARR14(2)    <---------At4g35610    --------->ARR11(3)   <---------YAB1 <-----------HVH21 <-----   tcgagctgtgacagaggtttatctgattagccatggtgagtctgatcttaatcttaaacctgatttgattggtgggagatgtcatgtagctgctcttact  9850400  Previous    Next  AGI:  At3g26775.1    Description:  pseudogene, F-box protein, similar to F-box protein Range:  from: 9848469    to: 9849902    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g26780.1    Description:  catalytic. similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT1G12850.1); similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Overexpression vector pFC12850OE] (GB:ABK41845.1); contains InterPro domain Phosphoglycerate mutase (InterPro:IPR013078); contains InterPro domain Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4 (InterPro:IPR017070) Range:  from: 9849865    to: 9851709    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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