Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                             <-------                                                                                             ------->GAMYB                                                                                            ---------                                                                                           ------>MYB46(1)                                                                                           ------>MYB83                                                                                          --------->MYB55(1)                                                                                          --------->MYB52(1)                                                                                        <---------MYB55(2)                                                                                 --------->ARR14(2)                                                                              --------->MYB46(3)             <------ZmHOX2a(1)                                                --------->DEAR3(2)            <------MYB83                                                    ------>MYB46(1)-------->P      <---------LBD16                                                       ------>MYB83--------->DEAR3(2)    <------ZmHOX2a(2)                                                       --------->MYB52(1) ------    ================HOX2a_HOX2a                                           <---------MYB59--------->AtMYB61 ---------ZAT18                                                        --------->MYB52(1)--------->MYB46(3) -------->ZAT18                                         --------->ALFIN1 --------->DEAR3(2)--------->MYB52(1) ----TGA1a  <------MYB46(1)                 <---------MYB52(1)         ------>MYB83------>ZmHOX2a(2) --->O2  <---------MYB52(1)               <---------ANAC58           <---------MYB59    --------->MYB46(3) --->TGA1a<--------P                      <---------ANAC58           ------->GAMYB<------ZmHOX2a(2) ----O2--------->LBD16                   <---------TOE2(3)        <-----------GT1<---------ARR14(2) --HVH21--------->LBD16            <---------TOE2(3)  --------->ALFIN1 ------>MYB46(1) <xxxxxxxxxxxxx   agtgcgatcccggtaggagtatcgcaatttctgcattaacatttacgtttgctaaggggtgggcattttaaccgaaccgaaccgatccgaaccaaccgaa  9824500      ------>MYB83      ------>MYB46(1)                                                                               <    --------->DEAR3(1)                                                                              -   --------->MYB46(3)                                                                               <   --------->DEAR3(2)                                                                               - >MYB83                                                                 <------MYB46(1)      -------- --MYB59                    --------->ZAT6                              <------MYB83         -------- >MYB46(3)           --------->LBD16          --------->MYB59           ----------->GT1      -------- >MYB46(1)         <---------LBD16          <---------MYB52(1)         --------->MYB59     --------->YAB1 xxxxxxxxsmallRNA(si3)    <-----------GT1  <-------GAMYB     ------->GAMYB              ------>ZmHOX2a(1)   ctcaaaccgacccaaactaaacccggattaacactaaaattattcggttaggcttcttctcaacccaaatagttcggtttaaaaactttcctatcacgac  9824600           <---------ANAC46           <------MYB83           <------MYB46(1)           --------->SPL7           <---------ANAC58        <---------SPL7           <---------ANAC58       --------->YAB1          --------->MYB111(1)    <---------------AtSPL3      <---------YAB1             --------------->AtSPL8 ---------AHL20(2)       ------->GAMYB    --------->ARR14(2)                    <----------DOF2 -------->AHL20(2)       <---------MYB59  --------->GLK1(2)               ----------->RAV1(2) ---------AHL20(1)    --------->MYB52(1)  <---------ARR14(2)            <---------DOF5.7(2) -------->AHL20(1) --------->ANAC55(2) <---------MYB59                 --------->WRKY12 ->ANAC46 --------->MYB46(2)     --------------->AtSPL3               --------->DOF5.7(2)      ------ ->ANAC58 <---------MYB46(3)     <---------------AtSPL8          <---------ALFIN1<---------ZAT14    < ->ANAC58 <---------AtMYB61   <---------AHL20(2)    ---------->DOF2   <---------MYB52(1)       <-----   aataaattttgtttggtgtttacataaccgaattaatcgtaccgaatccgaacttaaaccgaaattcccaccgttaacctggctatactgaaactatata  9824700                        --------->TOE2(2)                 <---------AHL20(2)               --------->AHL20(2)           --------->AHL20(2)                                                                       <           <---------AHL20(2)                                                                      --         <---------AHL20(2)                                                         <---------At5g28300         --------->AHL20(2)                                                  <-----------GT1       --       <---------AHL20(2)                                                 <---------ICU4           --       --------->AHL20(2)                                                --------->ICU4           <--    ------->TEIL --------->AHL20(2)                                    <---------MYB46(3)         <-- --------->ANAC55(2)    --------->TOE1(2)                              --------->MYB52(2)         --- <---------ANAC55(2)  <-------TEIL                                     ----------->GT1        ------- --->AHL20(2)  <---------AHL20(2)                                     <--------P--------->TOE2(3) --- -------TEIL <---------AHL20(2)                      ----------->GT1  <---------MYB55(1)      ------- ----AHL20(2)--------->AHL20(2)                 ---------->DOF2      <---------MYB52(1)      --------   tatacgtatatatatatatatatatacatgcgatgttgacaaatgaacacaaaagtagataaactcaaaccggtagttattacattaactgtgtaataaa  9824800      <---------CCA1(2)      <---------GLK1(1)      <----------TaMYB80                                         --------->ANAC58      --------->GLK1(1)                                          --------->ANAC58     ---------->TaMYB80                                          --------->ANAC46  ----------->GT1                                      <---------ARR14(2)  <---------ANAC46                               ------->TEIL <-------TEIL --------->MYB59                                 <---------ARR14(2) -------TEIL  <---------LBD16                    --------->GLK1(2) ------->CCA1(2)                                 --------->ARR14(2) ------->ARR14(1)                           <---------DOF5.7(2) <---------LBD16 ------->GLK1(2)                            --------->MYB52(1)<---------REM1(2) -------GLK1(2)--------->ANAC46       <---------ANAC55(2) <---------MYB46(3) -------ARR14(2)                     <---------LBD16   <-----------HVH21  --------->YAB1 ------>ARR14(2)       ---------->DOF2--------->ANAC55(2)<---------ANAC46--------->ICU4 -->YAB1      --------->MYB46(3)   ----------->HVH21   --------->ARR14(2)<---------ATHB12 ------>ARR11(1)--------->LBD16   <-----------HVH21  --------->LBD16   --------->WOX13(1)           - --->DOF2    <---------ALFIN1    <---------CCA1(2) <---------LBD16   ------------>CBF        -------- ->ICU4    <---------ALFIN1    --------->YAB1<---------TOE2(3)<---------ZAT14---------->DOF2 --------   gattcggtatatcccacccgcgaagaaaaggaatcatatcacgggttaacgaatccgggtcgggtacacggagcaatcataaagaagaaacaaaaactac  9824900                                                                       <------NtERF2                                                                      --------->LBD16                                                                      <---------ATERF1(1)                                                                      ------>NtERF2                                                                     --------->DEAR3(1)                                                                     --------->ATERF1(2)                                                                     <---------ATERF1(2)                                                                     <---------DEAR3(1)                                                                    <---------LBD16                                                                    --------->DEAR3(2)                                                                    --------->ATERF1(1)                                                               <----------CDC5                                                            <------NtERF2                                         --------->ZAT18   <---------MYB46(3)                                  --------->YAB1           ------>NtERF2                                 <---------YAB1            --------->ABI4(2)      <---------DAG2       <---------AHL20(1)          --------->ALFIN1--------->RAP2.3(1)      <----------DOF2      <---------AHL20(2)          <---------DEAR3(1) ----->NtERF2         *TSS --------->AHL20(2)      ---------->DOF2 --------->ZAT2 ->TOE2(2)          <---------MYB46(3)   <---------ZAT18  --------->ALFIN1        <----------DOF2 ->TOE1(2)          ----------->GT1      --------->ZAT14  <---------DEAR3(1)<---------ARR11(3)      <   gacgacaacttttttttggccttggttaaaaaattttcataagtgaacacagaagaagcggtggctctgagccggcgaaatctcctttctcatccctaaa  9825000                                                                  ------>ZmHOX2a(1)    <---------AtLEC2                        <---------GLK1(2)                    <---------GLK1(2)  <---------AGP1  <---------AtLEC2  ------>ZmHOX2a(1)                       <---------At4g35610<---------ZAT2  ------ -----------GT1  ------>NtERF2                       ------>ZmHOX2a(1)         --------->ZAT2  ------   attttcatgtccatcttgcctcctccgattatccaaggtcacaattcgtcttctccttcttcagattcctctctaaaccctagctctgagcatggcaaca  9825100                                             --------->GLK1(1)                                             <------ZmHOX2a(2)                                             <---------GLK1(1)                                            <---------ARR14(2)                                            <---------AGP1                                            <-----------ARR10                                            <---------ARR11(1)                                            --------->ARR14(2)                                           <---------ARR14(1)                                           <---------CCA1(2)                                          --------->LBD16                                         --------->LBD16                                         --------->ANAC46                                        <---------HSFB2a(2)  --------->ARR14(2)                                        --------->HSFB2a(2)  <---------ARR14(2)                                        <---------LBD16    --------->LBD16                                     ===============HOX2a_HOX2a                                     ------>ZmHOX2a(1)   <---------LBD16                                  ------>ZmHOX2a(1)    <---------ALFIN1                                  ==================HOX2a_HOX2a                      --------->ARR14(2)                                  ===================HOX2a_HOX2a                  <---------YAB1                             ------>ZmHOX2a(1)------>ZmHOX2a(2)               --------->KAN4(2)                             =======================HOX2a_HOX2a              <---------HSFB2a(1)                             ========================HOX2a_HOX2a             --------->HSFB2a(1)                            <---------ALFIN1<---------ARR11(3)--------->GLK1(1)--------->GLK1(2)     <<<<<<<<<TBF1 ------>ZmHOX2a(1) ================HOX2a_HOX2a          --------->LBD16 --->REM1(1)       ==================================HOX2a_HOX2a        <---------LBD16  ------>ZmHOX2a(1) --->MYB46(3)      =================================HOX2a_HOX2a    <---------GLK1(2) <---------ARR14(2)   actcttcttcttctctctctcctcttccctcctctcctccttcccggatctcttcttccaccggaactcgattctccggacattctgaatcctctcacaa  9825200                                               <---------WOX13(1)            --------->STY1(1)                  <----------DOF2            <---------STY1(1)                 <---------ANAC58          <----------DOF2                     <---------ANAC58        <------NtERF2                     --------->At4g35610       ------>NtERF2                      <---------At4g35610       --------->ABI4(2)                  --------->ZAT2                                 --------->TOE2(3)       <---------MYB46(3)                 <---------ZAT2                                 <-------GAMYB      <---------DEAR3(1)                <-----------RAV1(2)                       ---------->DOF2      --------->ALFIN1            <---------WOX13(1)                          --------->TOE2(3)     <---------MYB52(1)         --------->ATHB12                           <-----------GT1<---------MYB52(1)    --------->LBD16           <---------WOX13(1)                    <---------TOE2(3)   ----------->GT1  <---------LBD16           --------->ATHB12  <---------ANAC46      <---------TOE1(3)  <-------TEIL   tttctccggtggctctaggggtaatggaattgattgattaactcagctgcttgattttgccctaaattttagggtttttacattaaaagttcgttaattt  9825300                                                                                                   XX                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                               <-----                                             <----------DOF2                              ===========                                       --------->TOE2(3)                                  --------->ALFIN1                                     <-----------ARR10                                    ===========                                     --------->ARR11(3)           <----------DOF2         <---------ZAT6                 <----------DOF2     --------->GLK1(2)   --------->AHL20(2)               <----------        --------->ATHB12             <---------ARR11(3)  <---------AHL20(2)        --------->ARR14(2)       <---------YAB1        <----------DOF2 <---------DAG2 <---------AHL20(2)     <---------ARR14(2)   tgttgagttttgatttgggtttttagggtctctttgaaaaatcttagctttttctctaattttttattctttctgttaaactgtagaaccgagtgttgca  9825400  Previous    Next  AGI:  At3g26720.1    Description:  glycosyl hydrolase family 38 protein. similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G13980.3); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G13980.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G13980.2); similar to Glycosyl hydrolases family 38 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49101.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68107.1); contains InterPro domain Glycoside hydrolase-type carbohydrate-binding; (InterPro:I Range:  from: 9817818    to: 9824423    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g26730.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO49098.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 9824922    to: 9828675    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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