Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <------ZmHOX2a(2)                                                             <---------ARR11(3)                                                         <---------bZIP60(1)                                                         --------->bZIP60(1)                                                      ----------->HVH21                                                      ----------->TGA1                                                     ------->MYC3                                                     <-------MYC3                                                    --------->ANAC55(2)                                                    <---------ANAC55(2)                                                    --------->TGA1a                                                    <---------O2                                                    --------->ANAC46                                                    --------->O2                    <---------MYB46(3)                                                    <---------TGA1a        ------>MYB46(1)                                                  <-----------GT1          --------->MYB52(1)                                             <---------ANAC55(2)           ------>MYB83                               ===============================bZIP_DOF   <---------MYB59                               ---------->DOF2  <-----------HVH21       --------->MYB46(3)    XXXXXXX >LBD16              --------->YAB1          --------->ANAC55(2)      <-----------GT1 <---------ANAC46   cttgtagggctaacctttctctctgataatacacaaagtaagacaatacgtttcacgtgacgagatcaaatgtaaccaaacagtagtggctgaggcaaat  9801700                                                                                       <---------ALFIN1                                                                                      ------>MYB46(1)                                                                                      ------>MYB83                                                                                    --------->MYB46(3)               <---------------AGL15                    <---------HSFB2a(2)     --------->WRKY12               --------------->AGL15              <---------ALFIN1              --------->WRKY38(1)              ----------------->AGL3     --------->AHL20(2)                     ----------->HVH21              ----------------->AGL2     <---------AHL20(2)                   <---------At4g35610              ----------------->AGL1    --------->AHL20(2)            ---------->DOF2<---------ALFIN1        <---------ICU4               --------->ICU4     --------->HSFB2a(2)   --------->At4g35610---- XXXXXXXXXXXXX>MIR2112-5P <---------HSFB2a(1)   ----------->RAV1(1) <---------YAB1--------->PCF2 ----   gcagacctcattatgtcccaatttgagaaggtttgtgccaaaattaatagcaacacttccaaaaatgttgatgaaagctccgatgacccactctcccatt  9801800                                   --------->At4g35610                                <------ZmHOX2a(2)          <---------ATHB12                  <---------At4g35610    --------->At4g35610    ---------->DOF2            <---------ARR11(3)         ------>MYB83   --------->AHL20(2)          --------->ARR11(3)         ------>MYB46(1)   <---------AHL20(2)     ---------->DOF2<---------At4g35610 ----->YAB1       --------->At4g35610 ---------->DOF2    --------->WOX13(1)              --------->TOE2(3) ------->GT1 <---------YAB1   <------ZmHOX2a(1)        --------->MYB46(3)              ------->TEIL   ggtaattaaagaatgaagatagctcagttaaaggatcatctaaagctgcaaacttgaaccaatcaactagctcaggcctccctcatatgaatcttagcct  9801900                                                                    <---------WOX13(1)                                                                  --------->ATHB12                                                                 <---------YAB1                                                     --------->ANAC58                  --------->TOE1(2)       <---------WOX13(1)   <----------DOF2        <----------ID1                  --------->TOE2(2)     <---------MYB46(3)  ------->TEIL        <------ZmHOX2a(2)                  --------->TOE2(3)     --------->ATHB12   <---------CCA1(2)   <---------ARR11(3)          --------->YAB1               <---------YAB1--------->ANAC58         --------->GLK1(1)   tcaagagaagaagcataaaacctaagaagggctattagatggtgattgcaaacacaagcttgtacctttgattgaaacagagatcaaatggacaaaattg  9802000                                                                                   <------ZmHOX2a(2)                                                                                  <---------ARR14(2)                                                                                  --------->AGP1                                                                                  --------->ARR14(2)                                                                             <------ZmHOX2a(2)                                                                            --------->AGP1                                                                            <---------ARR14(2)                                                                            --------->ARR14(2)                                                                            --------->ARR11(3)                                                                           <---------At4g35610                                                                           --------->At4g35610                   <---------YAB1                                    --------->At4g35610              --------->ATHB12                  --------->TOE1(2)  <------ZmHOX2a(1)             <---------YAB1            <----------ID1              =======================HOX2a_HOX2a             --------->ICU4---------->DOF2      --------->TOE2(2)  =================HOX2a_HOX2a   aaacaagggttttcgatgattagcatagagaaagagaaaatgagacaaaacctgcgaagggacgatagaggagcttcagatccagatcgatttctaacag  9802100                                                --------->CCA1(2)                                       <---------DAG2           --------->YAB1                                       ------>ZmHOX2a(1)      ------>MYB46(1)                                       <----------DOF2      <---------MYB59                                   <---------ARR14(2)       <---------MYB46(2)   ---------->DOF2   <-                                   --------->ARR14(2)    <-----------GT1<---------ANAC58    ---------                            ---------->DOF2    *TSS    <----------DOF2  <---------ANAC46    <------ZmHOX2a(1)         --------->ZAT18 ----------->RAV1(1) <---------TOE2(3)------>MYB83<------NtERF2     =========  <-------TEIL  <---------ARR11(3) --------->GLK1(2)<---------TOE1(3)   <---------ANAC58   ----------   aagatgcagattgcacaagttctctcccaacaaagagaatcctttttgagatttaagctttaccaaacaaaatggcgtcgaataaaaggaagaaggataa  9802200             <---------------AGL15             --------------->AGL15            --------->LBD16      --------->HSFB2a(1)      ------>ZmHOX2a(2)    <---------ARR11(3)    --------->ARR14(2)    <---------ARR14(2)    --------->ARR11(3)    <---------AGP1<------------CBF   <---------CCA1(2)----------->GT1                 --------->ANAC58 -----------CBF  --------->DAG2                     --------->ANAC58     --------->DAG2      <------- -->GT1<----------DOF2                          <---------ANAC58 ------->GAMYB            ----------- ============HOX2a_HOX2a              <----------DOF2 <------ZmHOX2a(1) ---------->DOF2   ----------- ->GT1<---------HSFB2a(1)        ---------->DOF2<---------ANAC58--------->MYB46(3)     <---------DEAR3(1)   aaattggatctttccccaaaaattgaaaattctaaaaaagctttgatttttcgtaaggaagacccaatcgccgataaagcttgaagacgacggtgacgaa  9802300                                               <---------ZAT18                                             <------MYB46(1)                                             <------MYB83                                           <--------P                                         --------->MYB55(2)                                         --------->ATHB12                                         <---------MYB46(3)                                   <---------ANAC58                                   --------->ANAC55(2)                                   <---------ANAC55(2)                                   <---------bZIP60(2)   ------>NtERF2                   <---------ANAC58  --------->DEAR3(1)               <---------ANAC46 --ANAC46                         ----------->STF1      <-----------RAV1(1)             --------->ANAC55(2) >HVH21              <---------WOX13(1) <---------AtMYB61  ----------->GT1           ------>ZmHOX2a(1) >TGA1  <---------DEAR3(1)      ----------->TGA1   <----------DOF2              <---------At4g35610   gacgacgacgatggcgatgttagattgatacaaaatgacgtagtggttgggcccttttgtgttgttaaatctgtcttcttgctgctcctcacgttttgtt  9802400                                                                                    <------NtERF2                                                                                    ----------->GT1                                                                                   <---------MYB46(3)                                                                                  <---------ANAC46                                                                                 --------->ATERF1(1)                                                                                ------>NtERF2                                                                                <------NtERF2                                                                                <---------ATERF1(1)                                                                               <---------MYB46(3)                                                                              <---------ANAC58                                                                              <---------ANAC46                                                                              <---------ANAC58                                                                             <---------LBD16                                                                  --------->ANAC46<---------ANAC58                                                                  --------->ANAC58<---------ANAC58                                                                  --------->ANAC58<---------DEAR3(1)                                                                 --------->DAG2<---------SPL7                                                                ---------->DOF2<---------DEAR3(1)                <-----------GT1                      ------------>CBF        <<<<<<<<<E2Fc    <------             <---------ICU4                         --------->ANAC46         <<<<<<<<<E2Fd <---------       <-----------GT1                              --------->ANAC58     <----------DOF2 --------->ICU4   <----------DOF2                                  --------->ANAC58  -------->P--------->ALFIN1   ttgggctttttaccatttttactctcttctcttctctctctctcgttgagagacactcaatggccaaaaagcaacctttggcgggcgggtcaaaattgac  9802500                 <------------CBF                --------->ATHB12                                  ------>NtERF2                   <--   <-----------GT1      --------->TOE2(3)    *TSS     --------->At4g35610                       ----- -----GT1      <---------YAB1            <------ZmHOX2a(1)       --------->DEAR3(1)            ------ ---CBF<----------DOF2------->TEIL   ---------->DOF2  <---------At4g35610                      ------   tcttttgacctttcattttcattgaacctctatagacagaaaaggatggatttttctgatgaagacgacgacgaaaactgttttggttctcgtttcaacg  9802600  Previous    Next  AGI:  At3g26670.1    Description:  similar to permease-related [Arabidopsis thaliana] (TAIR:AT3G23870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49131.1); contains InterPro domain Protein of unknown function DUF803 (InterPro:IPR008521) Range:  from: 9799223    to: 9802147    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g26680.1    Description:  SNM1 (SENSITIVE TO NITROGEN MUSTARD 1). Identical to DNA cross-link repair protein SNM1 (SNM1) [Arabidopsis Thaliana] (GB:Q38961;GB:Q96280); similar to sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45700.1); similar to DNA repair metallo-beta-lactamase [Medicago truncatula] (GB:ABD33168.1); contains InterPro domain DNA repair metallo-beta-lactamase (InterPro:IPR011084) Range:  from: 9802545    to: 9805519    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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