Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------MYB46(3)                          <------MYB83                          <------MYB46(1)                         <---------DEAR3(1)    --------->MYB52(1)  <---------MYB52(1)   ----------->HVH21   <-------GAMYB <---------At4g35610  ------>ZmHOX2a(2)      --------->ARR11(3) --------->At4g35610  <---------MYB46(3)   <---------YAB1                                        ---- --------->ZAT2<-----------GT1      <---------YAB1  <---------ANAC46                           ------   atgagctgacgaactagtaactgatcgttggtgagattgtgtttgatgattttggtgtgaatttgtttcaattgagagaaatttgaacaagttcggagaa  9794100                                                                     <------NtERF2                                                                    <---------RAP2.6(3)                                                                    ------>NtERF2                                                                   >>>>>>>>>AtERF-3                                                                   >>>>>>>>>AtERF-1                                                                   >>>>>>>>>AtERF-2                                                                   >>>>>>>>>AtERF-5                                                                   >>>>>>>>>AtERF-4                                                                   --------->DEAR3(1)                                                                   --------->ATERF1(2)                                                                   --------->RAP2.6(2)                                                                   --------->RAP2.3(2)                                                                   >>>>>>>>>AtERF-7                                                                   --------->ANAC58                                                                   --------->ANAC58                                                                   --------->DREB2C(2)                                                                   --------->ANAC46                                                                   --------->RAP2.3(3)                                                                   --------->RRTF1(2)                                                                   --------->RRTF1(3)                                                                  --------->DEAR3(2)                                                                  --------->ORA47(2)                                                                  --------->RAP2.3(1)                                                                  --------->ATERF1(1)                                                                  <------NtERF2                                                                  --------->ERF1                                                                  --------->RRTF1(1)                                                                 ------>NtERF2                                                                 <---------ATERF1(1)                                                                 <---------RAP2.3(1)                                                                 --------->ABI4(2)                                                                 --------->ZAT2                      <---------AtMYB61                          <---------At4g35610                      --------->ALFIN1                     ------>NtERF2                 ------>ZmHOX2a(2)                        <---------DEAR3(1)                 ===========================HOX2a_HOX2a   --------->DEAR3(1)                 ====================HOX2a_HOX2a          ----------->HVH21                =====================HOX2a_HOX2a         <------NtERF2                <------ZmHOX2a(2)                        --------->RAP2.3(1)                ============================HOX2a_HOX2a  --------->ATERF1(1)               <---------ARR14(2)                       <---------ATERF1(1)               --------->ARR14(2)                       <---------DEAR4(2)                    <------              --------->GLK1(1)             <------MYB46(1)<---------ATERF1(1)                <------           --------->LBD16                  <------MYB83<---------RAP2.3(1)      --------->TOE2(3)          <---------HSFB2a(2)              --------->MYB111(2)  --------->ARR14(2)            -------         <---------LBD16                   --------->MYB55(2)   <---------ARR14(2)           ------>MYB83        <---------LBD16                    <---------MYB46(3)  --------->ATERF1(1)      <-----------GT1     <---------HSFC1(2)                    <---------AtMYB61<------NtERF2     --------->MYB52(1)     --------->HSFC1(2)                    --------->MYB111(1)<---------ATERF1(1)--------->TOE1(3)     --------->HSFB2a(1)    <---------ANAC46<---------ANAC46--------->ATERF1(1)<---------TOE1(3)     <---------HSFB2a(1) --------->ALFIN1  --------->MYB46(2)<---------DEAR3(1)<---------TOE2(3) ------->GT1  <---------GLK1(1)      <------ZmHOX2a(1) <---------DEAR3(1)     <-----------GT1------>MYB46(1) ---->DOF2--------->HSFB2a(2) <------ZmHOX2a(1)<---------MYB46(3)--------->At4g35610---------->DOF2   agtaagaagcttcgggagatcggaatggtggaggagagaggaggtttggtggtgaagacggcgacggagccgccatggattaacgataaatcaccaaatt  9794200                                        <---------REM1(1)                                     --------->ICU4                            <---------ANAC46                                               <---------ARR14(2)                        ------>ZmHOX2a(2)      <-------TEIL------>MYB83                    <---------GLK1(2)          <----------DOF2   --------->ALFIN1--------->At4g35610                            --------->ARR14(2)        <---------DAG2*TSS<---------ANAC46  <---------At4g35610                        xxxxxxxxxxxxxx ---ARR14(2)       <---------WOX13(1)<---------YAB1        ------>MYB46(1)          <------MYB46(1) < ---GLK1(2)    ================HOX2a_HOX2a ------->TEIL  <---------MYB59            <------MYB83 <--- -->ARR14(2)   ------>ZmHOX2a(1)   --------->YAB1     <-----------GT1       <---------At4g35610------   ctcacattcactctttcctcgattgatcgtgtgtggatgatgatgaagctgcatataaaccgaactaaaccgaagtttggctgatttggttcggattcgg  9794300                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                   <---------LBD16                                                          --------->ANAC46       ------>MYB46(1)                                                          --------->ANAC58       --------->MYB52(1)                                                          --------->ANAC58       ------>MYB83                                                        ------>MYB83  <---------HSFB2a(1)                                                        ------>MYB46(1)        <---------MYB59                                             --------->MYB46(3)       --------->HSFC1(2) xx>smallRNA(i)                --------->ATHB12         --------->MYB52(1)     --------->AtMYB61 ------------CBF             <---------WOX13(1)       --------->AtMYB61       --------->MYB46(3) <--- -------DOF2       --------->YAB1          --------->ARR14(2)         --------->HSFB2a(1)------>ZmHOX2a(2) ----->GT1     <------ZmHOX2a(1)          <------ZmHOX2a(1)           <---------HSFC1(2)<------ZmHOX2a(2)   tttattgtgtagcaagaggaagcataaccagattgattcgactaggaaccactaaaccaaacgaaatacagaaatttcgaaccaaaccggatcgattcta  9794400                                                            >>>>>>>>>TBF1                                                   --------------->AGL15                         <---------At4g35610       <---------------AGL15     <------ZmHOX2a(1)                      <---------MYB52(1)          ----------------->AGL3  --------->At4g35610           <---------DEAR3(1)            ----------->GT1 *TSS          --------->At4g35610        --------->ANAC46 --------->At4g35610   --------->CCA1(1)       <---------At4g35610 <---------YAB1 ------ANAC46<------NtERF2    ---------->DOF2  --------->RVE1(1)<----------ID1 --------->GLK1(2)    -   cgtgtattaaacgtcgtcgtttttgttagctaaaaagaagaaatagtaaatatccattagaagaagaagacgaagcagaggaatctagggtttatgctac  9794500                                                                                                  ---                                                                                                 <---                                                                                                 ----                   --------->ZAT2                                                               -----                  --------->ANAC46                                                              -----                <---------ANAC58                               <------ZmHOX2a(2)                <----                <---------ANAC58                              --------->ARR11(3)                <----            <-------GAMYB                                     <---------ARR11(3)                -----           <---------MYB46(3)                             ---------->DOF2                       <----       --------->ICU4     <------ZmHOX2a(2)            --------->YAB1                          <-----     ---------->DOF2  --------->At4g35610             <---------ATHB12          --------->ANAC46<---- --------->DOF2 <---------ANAC46                    --------->WOX13(1)       --------->TOE1(2) ------   attgaagcaaagatggttacgagcagcgatcaaatccaaaatggttctgaagagcaatcaaaaagatcagagatttacacatacgaagcaccatggcaga  9794600      <---------ATHB12 --------->ANAC58 --------->ANAC46 --------->ANAC58 --->ZmHOX2a(2)                                      --------->ANAC58 ---ZmHOX2a(2)                                   --------->YAB1 ----->CCA1(2)                                  <---------ATHB12 ---->AGP1                                    --------->WOX13(1) ---->ARR11(3)                             --------->ANAC58                      <------NtERF2 -------ARR10                              --------->ANAC58                    <---------ANAC46 -----ARR11(3)                        XXXXXXXXXXXXXXXXXXXX>MIR851-5P       --------->ARR14(2) ---->ARR14(2)                      <---------ARR14(2)                     <---------ARR14(2) -----AGP1                          --------->MYB52(1)                    <---------GLK1(2) ----CCA1(2)                      --------->HSFC1(2) --------->ANAC46<---------ARR11(3) -----ARR14(2)                    <---------HSFC1(2) --------->ANAC58<---------ARR14(2)       <------ --->At4g35610  <---------HSFB2a(1) --------->ARR14(2)               --------->ARR14(2)       -------   tctacgcaatgaactggagcattcgtcgagacaagaagtatcggctcgcaatcacaagcctcatcgagcaatatccgaatcgcgtcgaaattgttcagct  9794700                                                               ------->GAMYB                                                             ------>MYB83                                                             ------>MYB46(1)                                                            --------->MYB52(1)                                                           --------->AtMYB61                                                           --------->DEAR3(1)                                                          <---------MYB52(2)                           <------ZmHOX2a(2)              --------->MYB46(3)                           ===============================HOX2a_HOX2a                          <---------ARR14(2)              <---------MYB55(2)                          --------->AGP1                --------->ANAC46                          --------->ARR14(2)           --------->MYB46(3)                         <---------At4g35610           <---------MYB55(2)                  <-------TEIL  <-----------ARR10  ------>ZmHOX2a(1)                 ---------->DOF2                 --------->GLK1(2)            <---------HSFB2a(1)                --------->ANAC46          ----------->GT1--------->At4g35610  --------->HSFB2a(1)               <---------------AGL15   ------->TEIL  --------->ARR14(1)   --------->At4g35610------>MYB83           --------------->AGL15 ---At4g35610   <---------GLK1(2)     <---------At4g35610------>MYB46(1)       ----------------->AGL2 -->At4g35610 ----------->ARR10<---------CCA1(2)  --------->TOE2(3)       <-------TEIL         ------   tgatgaatcaaatggtgagattcgttcagatccaaatctctgcttcgaacatccttacccaccaacgaaaaccagtttcatacccgataaagaatgtcaa  9794800                                                        <---------YAB1                                                     --------->ICU4                                                     <---------YAB1                                                   --------->YAB1                                             <---------ARR14(2)                                             ------->TEIL                                             --------->ARR14(2)       <----------DOF2                       --------->GLK1(2)      ------>ZmHOX2a(2)                      <---------ARR11(1)     <------ZmHOX2a(2)                    <---------ANAC58     <---------ANAC58    <---------ARR14(2)                    <---------ANAC58 ------->TEIL--------->At4g35610    <---------ARR11(3)    <---------GLK1(1) <---------CCA1(2)  <---------ANAC46                    --    --------->ARR14(2)    --------->GLK1(1) <---------ARR14(1) <---------ANAC58              -------- ---->DOF2  <---------At4g35610 <---------TOE1(2)  <---------At4g35610 <---------At4g35610  <--------   agacccgatcttttagctacttctagtgatttccttcgtttatggcgaatctctgatgatgaatctcgtgttgagcttaagtcttgtcttagtagtgata  9794900                                            --------->At4g35610                                            --------->ZAT2                                            <---------ZAT2                                  <---------WOX13(1)                     <---------ATHB12       <---------At4g35610                <-----------GT1 ------->YAB1      --------->WOX13(1)      ------->TEIL               --------->HSFB2a(2) ->YAB1  --------->ZAT14        --------->ATHB12                      <---------HSFB2a(2) -ZAT6   <---------ZAT14       <---------YAB1                <---------------AtSPL3                 -   agaatagtgagtttagtggtccaatcacttcatttgattggaatgaagctgagcctagacgaattggtacttctagtattgataccacttgtactatttg  9795000  Previous    Next  AGI:  At3g26630.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44140.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9792608    to: 9794222    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g26640.1    Description:  transducin family protein / WD-40 repeat family protein. similar to ATAN11 (ANTHOCYANIN11), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G12910.1); similar to WD 40 protein [Matthiola incana] (GB:CAE76645.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 9794457    to: 9795694    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version