Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      =                                                                                                    <                                                       --------->HSFC1(2)                           -                                                       <---------HSFC1(2)                         <--                                                      <---------ALFIN1                            --- --------->AHL20(2)                               <---------HSFB2a(2)                            ---- ---------YAB1                                    --------->HSFB2a(2)                          <----- -------ICU4                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         ------- ----->ATHB1                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxx ------>ATHB51                                <----------DOF2                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------HAHB4                            <---------RVE1(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ----->ICU4         <---------TOE1(2)  --------->ARR11(3)        <<<<<<<<<TBF1  <xxxxxxxxxxxxxxxxxxxx ------YAB1         <---------TOE2(3)  <---------ARR11(3)      xxxxxxxxxxxxxxxx>smallRNA(s)<--------- >YAB1    <---------SPL7         --------->DEAR3(2)--------->ANAC46       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ttattaaacagacgtatgggcttaggttccttcggacagacgatatttctttctcgacacttccttcttcttctccatgtttttgatgaacacctttaat  9789400                                 <------------CBF                               --------->ICU4                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         xxxxxxxxxxxxxxxx>smallRNA(i)                       --------->MYB52(1)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                      <---------SPL7                     <---------ANAC58                     <---------ANAC58                     <xxxxxxxxxxxxxxxxsmallRNA(s)                    xxxxxxxxxxxxxxxx>smallRNA(s)                    <xxxxxxxxxxxxxxxxsmallRNA(i)                    <xxxxxxxxxxxxxxxxsmallRNA(s)                   <xxxxxxxxxxxxxxxxsmallRNA(s)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                  ------>ZmHOX2a(1)               xxxxxxxxxxxxxxxx>smallRNA(s)                      <-----------GT1              --------->GLK1(2)<---------YAB1                 xxxxxxxxxxxxxxxx>smallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->AHL20(2)              --------->ARR14(2)--------->ATHB51    <------ZmHOX2a(2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------ARR11(3)         --------->LBD16 <xxxxxxxxxxxxxxxxsmallRNA(s)------>ZmHOX2a(2)        <---------ANAC46--------->SPL7             <---------ARR14(2) <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------AHL20(2) ========================HOX2a_HOX2a               --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                --------->ARR11(3) ----->ZmHOX2a(2) xxxxxxxxxxxxxxxx>smallRNA(s)     --------->ARR14(3) -------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ------>ZmHOX2a(1) ------>ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ARR14(3)           <-------TEIL ----->YAB1   <---------ARR14(2)--------->YAB1    --------->GLK1(1)    --------->GLK1(2) ----TOE2(3) xxxxxxxxxxxxxxxx>smallRNA(i)         <---------GLK1(1)    <---------ARR11(3) -->YAB1<---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)<---------GLK1(1)  --------->ARR14(2)  --------->ARR14(2) xxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2     <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->CCA1(2)<---- xxsmallRNA(le3)----------->RAV1(2)        --------->ATHB12 <---------ATHB12   --------->GLK1(2)----- -DOF2  <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)--------->GLK1(1)  <---------ARR14(2)  <---------ARR14(2)   gatcttttttgcgtagaatcctggcgaacggctataattgtataatcgttggagatctcctaataaatcacagtatctgagattcgaattccaaatccct  9789500                            --------->MYB46(3)                            ------------>CBF                          ------>MYB83                          ------>MYB46(1)                        <---------MYB59                        --------->AtMYB61                     --------->WOX13(1)               --------->ANAC58                    <---------WRKY45                  --------->ANAC58                    <---------WRKY12            <---------ANAC58<---------DAG2                    <---------WRKY38(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           ------->TEIL--------->MYB46(3) --------->MYB52(1) <-----------GT1       <---------TOE2(3)------->GAMYB    ---------->DOF2   <----------DOF2  ----------->GT1 ---------     --------->ICU4--------->WRKY18(1)  --------->AtMYB61------->TEIL<----------DOF2 ---------->DOF2 -----STY1(1)    <------MYB46(1)    --------->MYB46(3)--------->ANAC46    <------ZmHOX2a(1) <-------- ---->STY1(1)    <------MYB83      ------->TEIL <---------ANAC58<----------DOF2>>>>>>>>>>GT-3b     --   aggtgtattaatgaacatttggtcaaccaaaccaatgtaccaccaaaggggcttacacgaactttacttttctttaggaagaaaaataaaagtcagttca  9789600                                                         --------->ANAC55(2)                                           --------->ANAC58                                    ---------->DOF2      <---------ANAC55(2)                                    <---------DOF5.7(2) <-------TEIL                        <--------                                  --------->DOF5.7(2)--------->YAB1                         <--------                               <---------TOE2(3)     -------->HAHB4             --------->ZAT18      <------------CBF         <---------TOE1(3)    <---------YAB1              <---------ZAT18     -    <-------TEIL          <----------DOF2  --------->ANAC58----------->HVH21<---------------AtSPL8 -- >At4g35610     --------->YAB1<-----------GT1    --------->ICU4             --------------->AtSPL8<-- -At4g35610   <---------MYB52(1) --------->TOE1(3)--------->YAB1      <---------ATHB12      --------- ------->AHL20(2) <---------YAB1 --------->TOE2(3)<---------ICU4<---------At4g35610         <--------   aaaaaatacattgtccgtttataatgggcttttaacgttaaagccaagcccataatgatacatgacagcccattcattttagtactctaatttggggtga  9789700                                                                ------->MYC3                                                                <-------MYC3                                                               ======================bZIP_DOF                                                               <---------bZIP60(2)                                                               <---------ANAC58                                                               <---------ANAC58                                                               <---------O2                                                               --------->O2                                                     ------->MYC3          --------->DAG2                                                     <-------MYC3     <------MYB83                                                    --------->O2<-------MYC2                                                    <---------O2------->MYC2                                                    --------->TGA1a   ----------->GT1                                                    --------->ANAC46  <------MYB46(1)                                                    --------->ANAC55(2)   ---------->DOF2                                                    <---------ANAC55(2)--------->At5g28300                                                    =====================bZIP_bZIP      --------->SPL7                      <---------ARR11(3)   <---------ANAC46    <-----------HVH21                     --------->ARR11(3)   <---------ANAC55(2) -ANAC46                                  <-----------ARR10    <---------TGA1a <---------MYB46(3) -ANAC58                                  <---------ARR11(1)   --------->TGA1a ----------->GT1 -------->GLK1(2)                         <---------ARR14(2)   <---------ANAC55(1) ------->KAN4(2)                  <-----------GT1   =================================bZIP_DOF -------KAN4(1)                <---------ICU4       <---------TGA1a  --------->MYB59 -->GT1<---------LBD16--------->ANAC46   <---------CCA1(2) <-----------HVH21  --------->ALFIN1   <--- -ANAC58 --------->LBD16    --------->YAB1--------->ARR14(2)   --------->ANAC55(2)            -------   ataatccgtcccgcgttaaaaaacacagaatcaaaattacttcatatcttcttcacgtgagagtcacgtgttcggtaaaagtggttgaaagttgaaaccc  9789800                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                                     ------->TEIL                                                                                     <-----------ARR10                                                                                    <---------CCA1(2)                                                                                <---------ANAC58                                                                                --------->ANAC55(2)                                                                                <---------ANAC58                                          *TSS                                  <---------ANAC46                                        <---------HSFB2a(2)                     <---------ANAC55(2)                                <---------At4g35610                            <-------TEIL                                <---------ZAT2                               <---------ARR14(2)                                --------->At4g35610                        <---------TOE1(2)                                ----------->RAV1(2)                     --------->ANAC58               ---------->DOF2  --------->ZAT2                          --------->ANAC58               --------->MYB52(1)       --------->HSFB2a(2)             --------->ANAC46 ---------CBF--------->TOE2(3) <-----------RAV1(1)         <---------ZAT14 <---------TOE2(2) ---------->AGL1            --------->ARR14(2)    ----------->HVH21   <---------ALFIN1     --------->HSFB2a(2)   attggggaacaaaaacctaaaggagtctcatttctgctgggtcgagaaatcgctgatagagagtagagagacacacgcaggtacgtgaatcttcgcgact  9789900                                                                                            ---------                                   <---------TOE2(3)                                      <---------ARR11(3)                                   <---------TOE1(3)                                     <---------GLK1(1)                  <---------ATHB12---------->DOF2              --------->WOX13(1)     --------->YAB1     <----------DOF2      <---------MYB52(1)     <-----------GT1                   --------->WOX13(1)  ------>ZmHOX2a(2) --------->WOX13(1)          <---------AHL20(2)               <---------ATHB12   tcgatctctttgtgtatcaaatcaatccgttcttgttaaagttttcatttttaatcttccaatttcaatctgggtctacttaaatcaatcgaaatctcaa  9790000                                                         --------->ZAT18                                                         --------->ZAT14                                                         <---------ZAT14                                                       <---------ZAT18                                                      <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                     <-------TEIL                                                  <---------ZAT2               ---------->DOF2                    --------->ZAT2                <------ZmHOX2a(1)       <---------GLK1(2)                   --------->ARR11(3)       <---------TOE1(3)   <---------ZAT2             <---------ANAC58    <---------At4g35610          ----------->GT1   <---------At4g35610        <---------ANAC58    --------->At4g35610        <------ZmHOX2a(1) >TOE2(3)  <---------YAB1   <-----------GT1<---------GLK1(2)        <---------TOE2(3)               -   tttcaagctgattcttataaagtttcgatttttcttgctgttttagattttgagctgcgtgctctgttttaagcttgaaggaggaaaaacatggcagacc  9790100                                                                                     ================                                                                                     ------>ZmHOX2a(2)                                                                                   --------->ARR11(3)                                                                        <----------ID1                                                <------ZmHOX2a(1)   --------->MYB52(1)     --------->YAB1 --------->GLK1(2)   --------->CCA1(2)      ---------->DOF2--------->LBD16         <---------ARR11(3) -------->YAB1    <---------TOE2(3)       <---------ATHB12--------->ANAC46     --------->YAB1       -   aagaatcagataagaacattgagatttggaagattaagaagctaatcaaaggacttgaaaccgcaagaggtaatggaacaagtatgatctctcttataat  9790200                                                      ------->GAMYB                                                      --------->DEAR3(1)                                                     --------->MYB46(3)                                                     --------->ATERF1(1)                                                     --------->DEAR3(2)                                                    <---------ATERF1(1)                                                <---------ANAC55(2)                                                --------->ANAC55(2)                                                --------->ANAC58                                                --------->ANAC55(1)         <------ZmHOX2a(2)                      --------->ANAC46        --------->ARR11(3)                      --------->ANAC58   <---------HSFB2a(2)                       <---------ARR14(2)                       --------->WOX13(1)   ------>ZmHOX2a(1)                 <---------At4g35610                           --------->TOE2(3)   --------->HSFB2a(2)            <---------ANAC58 <---------ARR14(2)           --------->ARR14(2)   =============HOX2a_HOX2a       <---------ANAC58 --------->ARR14(2)      ----------->GT1       ---- =========HOX2a_HOX2a           <---------YAB1 <---------LBD16             <---------ANAC46      <--- ----->NtERF2         <-----------HVH21   <---------YAB1       --------->YAB1   <---------ARR14(2)   gcctcctagagatcaagtagctcgtgtcactaagatgcttgctgatgaatacggaaccgcctcaaacatcaagagtcgagtgaatcgtcaatctgtttta  9790300  Previous    Next  AGI:  At3g26616.1    Description:  unknown protein Range:  from: 9788811    to: 9789378    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g26618.1    Description:  ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3); translation release factor. Identical to Eukaryotic peptide chain release factor subunit 1-3 (ERF1-3) [Arabidopsis Thaliana] (GB:P35614); similar to ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1), translation release factor [Arabidopsis thaliana] (TAIR:AT5G47880.1); similar to ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1), translation release factor [Arabidopsis thaliana] (TAIR:AT5G47880.2); similar to ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2), translation release factor [Arabidopsis thaliana] (TAIR:AT1G12920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64712.1); similar to hypothetical protein [Vitis Range:  from: 9789842    to: 9791588    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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