Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->ANAC58                                        --------->ANAC58                         <------ZmHOX2a(2)                         ===============================HOX2a_HOX2a                        --------->ARR11(3)                     --------->LBD16   <---------LBD16          --------->ARR11(3)       ----------->HVH21          <---------ARR11(3)   --------->ALFIN1      <----------DOF2     <------------------------ANAC81      <---------AtLEC2  <---------ARR11(3)       <------ZmHOX2a(1)      <------------------------ANAC81   cattatttgcaagatttatgacccgagatcaaggtgtttgacacggagagaggagcttttgttcttcactagtttttttttttttttttggttcttcata  9777800                     --------->CCA1(2)                    --------->ARR11(1)                       <---------WRKY18(1)                    <---------ARR11(3)           --------->ANAC58       <---------TOE2(2)                    --------->ARR11(3)         ---------->DOF2       <---------ANAC46                 <---------TOE2(3)            <------ZmHOX2a(1) <---------DAG2      --------->ZAT18<-                ---------->DOF2      --------------->AGL15  --------->WRKY38(1)  <---------ANAC58 <--            <----------DOF2          <----------DOF2        --------->WRKY12     <---------ANAC58 <--         <---------ALFIN1         <-----------GT1--------->ANAC58<----------DOF2--------->ATHB12  <--   ctagttaatccacacttttaaagatatgtgcaaatttttctttgtggaggaaagaaattttgttgaccttttcgtagataaatgagtgccatgttatgag  9777900        <---------ANAC46      <---------ZAT18                           <-------GAMYB      --------->ZAT18                          <---------MYB46(3)                              <-----  <-----------RAV1(1)                          --------->MYB111(2)                       <------ZmHOX2a(1) --------->SPL7                              <-------GAMYB----------->GT1              <---------TOE2(2) --------SPL7               ----------->RAV1(1)--------->MYB55(2)                    --------->TOE1(2) -------ANAC46             <----------ID1    <---------ANAC58                       --------->ANAC46 -------ANAC58            --------->ZAT18    <---------ANAC58                <---------TOE2(3) ------ -------ANAC58        <------ZmHOX2a(1)     <---------MYB46(3)               <---------------AtSPL8   gcgtatggtgcggtattagaagtaggagtgcaacaaaataaaactttggttgttgtgagtttgtaattcatatatgtttatggtacacgtaggaaaatta  9778000                                                                           --------->YAB1                                                                      --------->ANAC55(2)                                                                      <---------ANAC55(2)           ----------->GT1                                      <------ZmHOX2a(1) ----AHL20(2)                         <---------ANAC46        --------->MYB59 --->AHL20(2)                  <---------YAB1             <---------MYB46(3)--------->TOE2(3)<-------   tatgagagaatagatgtgaaaactctctagtttataaatggggtttaagcacttaacaagtggttaggacttacttaacataaactatttgttaactttt  9778100                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <---------AtLEC2                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                    --------->ARR11(3)                                                                   <-----------GT1                                                                <---------AHL20(2)                 --                                                               --------->AHL20(2)                *TSS                                                       <------------CBF   <---------ANAC58  <-------- ---DOF2 ----------->GT1  --------->ZAT6      ----------->GT1 ----------->TBP            <----------DOF2   ggagttttgaagggtatttctgaaaataacacaagagaataggtcatttagtaaaactattgctatataataccttgcatgtagccatttcctttcacca  9778200                                                                                <---------------AGL15                                                                                <---------MYB59                                                                                --------------->AGL15                                                                               ----------------->AGL3                                                                               --------->ANAC55(2)             <---------GLK1(1)                                                 ----------------->AG    ------>MYB46(1)                                                            ----------------->AGL2    ------>MYB83                                                     ---------->DOF2   ----------->RAV1(1)                      ----------->GT1          --------->ZAT14  --------->AtMYB61               --------->YAB1                     <---------ZAT14 ------->ANAC46      ---------->DOF2   --------->ZAT6--------->AHL20(2)      <-----------GT1 ---GT1 ---------->DOF2     --------->YAB1---------->DOF2         ----------->GT1   tacaccaacaaaaagaaaccccaaaaagaatcaaaaacataacacaaagttataagaaaatatgaagacagtaaagagtttacctattttagctatgcta  9778300                       <---------ALFIN1                    --------->ATERF1(2)                    --------->DREB2C(2)                    --------->RRTF1(3)                    --------->RRTF1(2)                    --------->ANAC46                    --------->RAP2.3(3)                    --------->RAP2.3(2)                    --------->DEAR3(1)                    <---------ATERF1(2)                    --------->RAP2.6(2)                   --------->DEAR4(2)                   --------->RRTF1(1)                   --------->RAP2.6(1)                   --------->ATERF1(1)                   --------->ERF1                   --------->ORA47(2)                   <------NtERF2                  --------->DREB2C(1)                  <---------DEAR4(2)                  <---------ATERF1(1)                  <---------RAP2.3(1)                  <---------DREB2C(1)                  ------>NtERF2                  --------->At4g35610                 <---------DEAR3(1)                 --------->ANAC46                 <---------ATERF1(2)                 --------->DEAR3(1)                 --------->RAP2.6(2)                       --------->ANAC55(1)                --------->MYB46(3)                         --------->ANAC55(2)                --------->RAP2.3(1)                        <---------ANAC55(2)                --------->ATERF1(1)                   <---------ICU4                --------->ERF1                   --------->At5g28300                --------->DEAR3(2)              ----------->GT1               <---------ATERF1(1)              --------->RAP2.6(2)                     <-----------HVH21               <---------At4g35610              <---------ANAC46                        <-----------TGA1           <---------REM1(1)    --------->DEAR3(1)    --------->ANAC46                 <---------ETT(2)        <---------ICU4<------NtERF2        <---------ANAC58--------->ANAC46         --------->DEAR3(1)        --------->ATHB51     <---------ALFIN1 --------->ZAT18 ---------->DOF2    <---------ALFIN1       --------->ICU4------>NtERF2         <---------ANAC58--------->ANAC58     --------->MYB46(3)       <---------YAB1<---------ATERF1(1)<---------MYB52(1) --------->ANAC58     <---------MYB55(2)     --------->YAB1--------->RAP2.3(1) <-------GAMYB  --------->YAB1      XXXXXXXXXXXXXXXXXXXX>MIR4228   ctcggtgtcataattgtagccgccgccatctccaccgtctccgttgagggccgtaaacatcacgtaaagaagattaaacccaaacaccgtcgtcattcca  9778400                           <---------ALFIN1                         --------->ANAC46                         --------->ANAC58                      --------->PCF2                      ------>NtERF2                      <---------ATERF1(1)                     <---------ALFIN1                   <-----------HVH21                   --------->LBD16                   <---------ATERF1(1)                   ------>NtERF2                 <---------LBD16              <----------DOF2                       <---------ANAC58              --------->GLK1(1)                     <---------ANAC58              <---------GLK1(1)                  <---------DEAR3(1)          --------->ATERF1(2)    -------->P  ------>MYB46(1)          <---------ATERF1(2) <---------DAG2 ------>MYB83         --------->RAP2.6(3)------->TEIL    --------->MYB52(1)        ------>MYB83 --------->DEAR3(1)--------->SPL7                                --------->ALFIN1        -------->P--------->ANAC46   <-----------HVH21                        <------NtERF2        ------>MYB46(1)  --------->ANAC58  --------->AtMYB61                 ------>NtERF2        --------->MYB52(1)--------->LBD16  --------->DEAR3(1)            <-----------RAV1(1)       ------>ZmHOX2a(1)--------->MYB46(3)--------->MYB46(3)           ------>ZmHOX2a(1)         ----   aaaacactcctaccggctctccggcacccgcaccttacccgtccaccaacgagggcgttttcaacattttctcctatggtgccaagggtgatggagtctc  9778500                       <---------AHL20(2)                    <---------AHL20(1)                    <---------ARR11(3)                   <---------CCA1(2)                                                >>>>>>>>>RAP2.2            <-------TEIL                                                          --------->ARR11(3)            --------->SPL7                                                        <---------ARR11(3)        <---------------AtSPL8                                                   --------->CCA1(1)        <---------------AtSPL3 --------->TOE2(3)             --------->TOE2(3)   --------->RVE1(1)      ---------->DOF2<---------AHL20(2)              ---------->DOF2         --------->AHL20(2) ------->HVH21  <-------TEIL<-----------GT1    ---------->DOF2            --------->YAB1   tgacgactcaaaggtacgtccatatatttttaacatcaacttgatgcttcaaagaaaaagaaatattaatcttttatcaaaaaatatctaaattagtgtc  9778600                  <---------ANAC58                                                        <----------                  <---------ANAC46                                         --------->TOE2(3)                  <---------ANAC58                                   <---------ICU4       <<<<<<<<<GT-1            <---------ANAC58                                    --------->ZAT14     --------->YAB1            <---------ANAC58                                 --------->ANAC46    --------->YAB1           <---------TOE2(3)                                 --------->ANAC58   <---------AHL20(2)          <-----------GT1     <---------ANAC46          <-----------GT1   <---------ANAC55(2)   --------->TOE2(3)         ---------->ID1<---------ZAT6    --------->ANAC58 --------->YAB1     <---   tcaattcttaatttacgtttgcgtttgatttttcgtttatatttagagtcaatgtttttttccaagtaaactcattacataaataatcatattaaccaaa  9778700  Previous    Next  AGI:  At3g26610.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G60590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66120.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 9778197    to: 9781736    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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