Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                <----                                                                                              -------                                                                                    <---------ANAC58                                                                                    <---------O2-----                                                                                    <---------bZIP60(2)                                                                                    <---------ANAC58                                                                                   <---------TOE1(3)                                                                                   <---------TOE2(3)   <---------At4g35610                                                       <------NtERF2  <--------   --------->ZAT2                                                        ------->GAMYB      <------NtERF2   --------->At4g35610                    --------->bZIP60(1)          --------->RAP2.6(3) ------>NtERF2  --------->GLK1(2)                       <---------bZIP60(1)         <---------DOF5.7(2)  --------->MYB52(1) --------->DOF2                   <------ZmHOX2a(1)           --------->ANAC58    <---------DOF5.7(2) >NtERF2  --------->WOX13(1) --------->ANAC46  --------->MYB46(3)     --------->MYB52(1) --------->ATERF1(1) -ATERF1(1)                 <---------LBD16  <-----------GT1  --------->ANAC58  --------->DOF5.7(2)   caagaagctgagcaatccagtagagaataccacggaggagagtgatgttaccaccgagtaagacaccgaaggtaacggcagggttaacgtggccaccgga  9724700                                                                   <------NtERF2                                                                  <---------RAP2.6(3)                                                           <---------bZIP60(2)                                                           <---------TGA1a                                                           <---------O2                                                           --------->O2                                                           ===========================MYC_MYB                                                          <------NtERF2                                                         ------>NtERF2                                                        ----------->HVH21                                                        <---------DEAR3(1)                                                        --------->DEAR3(1)                                                       --------->RAP2.3(1)                                                       <------NtERF2                                                       --------->ATERF1(1)                                                      <---------RAP2.3(1)                                                     <---------DEAR3(1)                                                     --------->DEAR3(1)    <---------MYB46(3)                                                    <------NtERF2 <------NtERF2                                                    --------->ATERF1(1)    --------->MYB55(2)                     ----------->RAV1(1)            <---------At4g35610   --------->ALFIN1            ------->GAMYB                          <---------ATERF1(1) <------ZmHOX2a(1)         --------->MYB52(1)         --------->ANAC58--------->At4g35610==============================         ----------->RAV1(1)        --------->ANAC58<---------ZAT2<---------SPL7        <xxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------TOE2(3)  --------->LBD16    --------->At4g35610 ---------->DOF2    --------->At4g35610  <---------LBD16 ----->GLK1(1)      <----------ID1---------->DOF2  <xxxxxxxxxxxxxxxxsmallRNA(i) -----ARR14(2)     --------->At4g35610     <---------At4g35610 ------>NtERF2                    ----- -->LBD16------>NtERF2  =============================================bZIP_DOF                 <------ ---->ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------ATERF1(1) <---------AtMYB61   ------- -LBD16 --------->DEAR3(1)        ===================================bZIP_DOF<--------P<-----------HVH21   aatgttagcgccaacagagacagcgacaaagagaccgaaagcatgagctaaggcagcggcgacgaggccggaaggagtggttgctccattgtcagtgatc  9724800                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                              --------->ZAT18                                                                      <------NtERF2                                                                     --------->ABI4(1)                                                                     ------>NtERF2                                                                    --------->RRTF1(3)                                                                    --------->RAP2.3(2)                          <---------ATERF1(1)                       --------->RAP2.3(3)                          --------->LBD16                           --------->RRTF1(2)                         --------->DEAR3(1)                         --------->RAP2.6(2)                         <---------ATERF1(2)                        --------->DREB2C(2)                         --------->ATERF1(2)                        --------->DEAR3(1)                         <---------DEAR3(1)                         <---------ALFIN1                        --------->DEAR3(2)                         <------NtERF2<-------GAMYB                        <---------LBD16                            --------->RRTF1(1)                 ------>NtERF2                                     --------->ERF1                --------->ARR14(2)                                 --------->RAP2.3(1)                <---------ARR14(2)                                 --------->ORA47(2)          --------->ARR14(2)                                       --------->DEAR4(2)          <---------ARR14(2)                                       --------->RAP2.6(1)         <---------GLK1(1)------>NtERF2                            --------->ATERF1(1)     --------->ANAC58   --------->ATERF1(1)                       <---------DEAR4(2)     --------->ANAC58  --------->ZAT2                             <---------RAP2.3(1)   ---------->DOF2----------->RAV1(2)                             <---------ATERF1(1) ==HOX2a_HOX2a--------->LBD16             ---------->DOF2       <---------ABI4(2)    <---------ANAC46 ->ZmHOX2a(2)<---------HSFB2a(2)       --------->ARR11(3)       --------->ATERF1(1)  <---------ANAC58 ---ARR11(3) --------->HSFB2a(2)       <---------ARR11(3)      <---------ATERF1(1)   <---------ANAC58 -->ARR11(3)<---------LBD16<------NtERF2<------ZmHOX2a(2) ---------->CDC5     <-------TEIL<---------WOX13(1)   ttgttgaaagcaattccggagcctgagccggcgaagacgaagatcaaagtcgagataaactcagcgagcgccgccctaagtgcgttggggtgatagacct  9724900                                     --------->ATHB12                                    --------->ICU4            ----------->GT1                                    <---------YAB1           <---------TOE1(3)                                 <------NtERF2               <---------TOE2(3)                                <---------DEAR3(2)       ----------->RAV1(2)                       <-                               <---------DEAR3(1)     --------->RAP2.6(3)                          <-                               --------->ETT(1)      <-----------GT1         --------->ATHB12    <---                      <---------HSFC1(2)             --------->MYB52(1) <---------DAG2         ------                      --------->HSFC1(2)------>ZmHOX2a(2)--------->At4g35610<---------YAB1--------->ZAT18            --------->AtMYB61 <---------ORA47(1) --------->ARR11(3)     <----------DOF2   --------->ZAT14           --------->MYB46(3) --------->RAP2.6(3)<---------ARR11(3)---------->DOF2        <---------ZAT14   cttcttggactccaccaatggcgatgtttctggtcggcatgatcggagaaagatttaacggctgaggttaaaagctttttgattagagagagtgaagtga  9725000                             --------->AHL20(2)                                                     <                             <---------AHL20(2)                                                     -                          ------->TEIL                                                             --                      ------->TEIL                                                                 <-                    <---------SPL7                                                                <-- -----MYB83       <---------------AtSPL3                                                          <-- -----MYB46(1)    --------------->AtSPL8                                         <----------DOF2  --- ------WOX13(1)   <---------------AtSPL8            *TSS             --------->AHL20(2) <---------ANAC55(2) --->ATHB12     <-----------RAV1(1)              <<<<<<<<<TBF1     >>>>>>>>>GATA-1  <-----------HVH21   ttggtttgtttttcttatgtgttgtacgtatatatatagccgagtgttttcttcttcttgatagttatagataaaatccatttctttgtcacataaacaa  9725100                                                                                        ---------->TaMYB80                                                                                     <------MYB83                                                                                     <------MYB46(1)                                                                                     ----------->GT1                                                                                     <---------ANAC46                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                    --------->MYB59                                                                              ---------->DOF2                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxx                                                   --------->ICU4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       ------>MYB46(1)        <---------KAN4(2)--------->DAG2                                       ------>MYB83------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->LBD16          --------->AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------HSFB2a(2) ---------AHL20(2)              <---------WOX13(1) <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->AHL20(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->HSFB2a(2)<------- ------->AHL20(2)         <-----------GT1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(le3) --------AHL20(2)   xxxxxxxxxxxxxxxx>smallRNA(i)  --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------AHL20(1)  ----------->GT1    <---------MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-------- -------AHL20(2)<---------TOE1(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>AHL20(2)<---------TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i)  <   attattttgcatttttttaagggttaatttactgaatgaccaaatttgacatccttattaagagaatgaccttctcccagaaaagttgggtatataacgt  9725200                                                                                                 xxxx                                                                                            <xxxxxxxx                                                                                            <--------                                                                                            xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <---------ZAT2 <-                                                                                    --------->At4g35610                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                          ----------->RAV1(1)   xxxxxxxxxxxxxxxxxxxxx                                                         ----------->HVH21     <xxxxxxxxxxxxxxxxxxxxx                                          <------NtERF2  --------->LBD16  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxx                                         ------>NtERF2   <---------ETT(1)<xxxxxxxxxxxxxxxxxsmallRNA(le3)               <---------ARR14(2)        ----------->GT1<---------HSFB2a(2)<---------REM1(1)<xxxxxxxx               --------->ARR14(2)        --------->RAP2.6(2)  --------->At4g35610xxxxxxxxxxxxxxxxxxxx              --------->RVE1(1)         <---------RAP2.6(2)   --------->ZAT2 --------->ALFIN1xxxxxxxx              --------->CCA1(1)         <---------DEAR3(1)------>NtERF2 <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       --------->AtLEC2                 --------->ATERF1(2)   <---------ZAT2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------At5g28300         <---------LBD16  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxx  <-----------GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)-- --TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ATERF1(2)   <---------At4g35610xxxxxxxxxxxxxxxxxxxx   ttttttaccatgcgaaatatccgatatagcctctacggatgggcggcaaaaccatattcccgacagcagacttgtagatgtaggggagctagagattgta  9725300    --------->ATHB12    <--------ATHB1    --------->YAB1    <---------ICU4   <---------YAB1   --------->ICU4   <---------ATHB12  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxsmallRNA(si3) -------AtSPL3 xxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(si3)                              ----------------->AGL3 xxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------------------WRI1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxx>smallRNA(fl3)                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxx>smallRNA(fl3)                           ----------->GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxsmallRNA(fl3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxsmallRNA(se3)                      <---------ANAC58--------------->AGL15            ------>ZmHOX2a(2) xx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)                <------ZmHOX2a(2) xsmallRNA(le3)------->TEIL            <---------ANAC55(2)  ---------->DOF2           --------->ARR11(3) xxsmallRNA(se3)                       <---------ANAC58<---------------AGL15          <---------ARR14(2) xxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------AGP1 xx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->ARR14(2) xxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------YAB1 xxxx>smallRNA(le3)              >>>>>>>>>>ABI3 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ARR11(3) ---------------->ATHB9          >>>>>>>>>>FUS3<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------CCA1(2) xx>smallRNA(si3)         ---------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ZAT14   gggcaatgattacaacgtatcaaaaaaaaaaagcatgcattacttatgcagttactactaaataaagcatgaactatttatgagtgtagatctcaattta  9725400                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                   --------->ANAC58 <---------ZAT2                                                   --------->AtLEC2 --------->At4g35610                                                   --------->ANAC46 --------->ZAT2                                                   --------->ANAC58 <---------At4g35610            --------->REM1(1)              --------->AHL20(2)      ----------->RAV1(1)     <---------AHL20(2)       <---------ICU4                   --------->YAB1    <-----------GT1              <------ZmHOX2a(1)    --------->YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ZAT14   ---------->DOF2  < <----------DOF2<----------DOF2   ------->TEIL  <-------TEIL    ------->GAMYB    <---------YAB1<-----   gagctttcattactacaactttctaagtttgtactgaacgtttcataaaatacatgcaatttacaactgcagcagcatgtactatgaaaggatttatttc  9725500                                                                                      <---------ANAC58                                                                                      <---------ANAC46                                                                             <--------P                       --------->AHL20(2)                         xxxxxxxxxxxxxxxxxx>smallRNA(le3)                      --------->AHL20(2)                         --------->ARR11(3)   <---------ANAC58                     <---------YAB1                              <---------ARR11(3)   <---------LBD16                    --------->TOE2(3)                          --------->ANAC58      <---------LBD16                   --------->ATHB12                            --------->ANAC46  <---------------AGL15                   <--------HAHB4                              --------->ANAC58  <---------DAG2                   <---------ICU4                       <----------TaMYB80 ----------->GT1                   --------->YAB1                      --------->ARR14(2)  <------MYB83                  --------->ICU4                       <---------ARR14(2)  <------MYB46(1)                  <---------YAB1                xxxxxxxxxxxxxxxx>smallRNA(le3)   <----------DOF2                --------->YAB1          <---------YAB1 ---------->TaMYB80 <---------MYB46(3)           --------->AHL20(2)     <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <--           <---------AHL20(2)     --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxx ---------AHL20(2)<---------ATHB12--------->AHL20(2)----------->GT1       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----AHL20(2)--------->YAB1      --------->AHL20(2) <---------ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   attttttttttaaaaaaataatcattaaaaaacaaaaaaattagtattgaaatggagtatataccacgatattgggctggtaactttttcgggtgagtat  9725600  Previous    Next  AGI:  At3g26520.1    Description:  TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel. Identical to Aquaporin TIP1-2 (TIP1-2) [Arabidopsis Thaliana] (GB:Q41963;GB:O23117;GB:O82446;GB:Q9LRV6); similar to GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma), water channel [Arabidopsis thaliana] (TAIR:AT2G36830.1); similar to tonoplast intrinsic protein [Brassica napus] (GB:AAD39372.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 9723680    to: 9725052    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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