Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------ALFIN1             --------->DEAR3(1)           --------->LBD16           <---------ATERF1(1)       --------->ARR14(2)       <---------ARR14(2)        <---------HSFC1(2)      <---------ARR14(2)         --------->HSFC1(2)      --------->ARR14(2)         --------->HSFB2a(1)      <---------GLK1(2)          <---------HSFB2a(1)    --------->LBD16             ------->TEIL  <---------LBD16              <---------ARR11(3)                                       <-----------GT1 --------->LBD16             --------->ANAC58                                   --------->LBD16 ------>NtERF2------>NtERF2  --------->ANAC58                                  <---------ANAC46 -------ATERF1(1)         --------->LBD16                                   --------->DEAR3(1) ----->ARR14(2)          --------->ANAC58           <---------At5g28300     <---------ALFIN1 ------ARR14(2)          --------->ANAC58 <---------ZAT18                   --------->AtMYB61      <- >MYB52(1) ------>NtERF2 --------->DEAR3(1)        <-----------GT1       <---------ALFIN1       -----   ttccgccggattccgcctccttgagcaccgcaagaaccttctcgttcacttcttcaccgcttctcaacatcgattccacctccgtagaataaaccctaga  9710800                                                                   <------NtERF2                                                                  ----------->RAV1(1)                                                                  ------>NtERF2                                                                  --------->LBD16                                                                 --------->ANAC46                                         <---------ZAT14        <---------LBD16                ------>ZmHOX2a(1)        --------->ZAT14    <---------ALFIN1               --------->TOE2(3)         <---------ZAT18   --------->MYB46(3)                       -               --------->TOE1(3)         --------->ZAT18 --------->ANAC46                           -            ------->TEIL              <---------ANAC46  --------->ZAT18                            <-            <---------ARR14(2)        <---------ANAC58 ------->GAMYB                              <--            --------->ARR14(2)        <---------ANAC58 --------->RAP2.6(2)                 <---------At4g35610       ------>ZmHOX2a(1)          <---------MYB52(2)  --------->MYB46(3)                   --------->At4g35610    ------>ZmHOX2a(1)        --------->ANAC55(2)     ------>MYB46(1)                       --------->ZAT2   <---------ALFIN1          --------->ANAC46        ------>MYB83--------->LBD16        <---------At4g35610 --------At4g35610          <---------HSFB2a(2)      -------->P------->GAMYB         ------>ZmHOX2a(1) ----->DOF2<---------CCA1(2)--------->HSFB2a(2)   --------->MYB46(3)           ------>NtERF2     ----   aagctcctcctctgtatccttcaacttcttctcgtaactatcgtgcacttcatccaaccgcacaaccccggcataaatctccgactccttcgctgcttcc  9710900                                          --------->At4g35610           --------->ARR14(2)          <---------ZAT2        <-----------RAV1(2)           <---------ARR14(2)------>ZmHOX2a(2)              <------ZmHOX2a(2)           --------->GLK1(2) =======================HOX2a_HOX2a          <---------ARR14(1)<------ZmHOX2a(2)       <----------CDC5 -------->LBD16             ========================HOX2a_HOX2a ----->NtERF2              --------->ARR11(3)======================HOX2a_HOX2a --------DEAR3(1)          <---------ARR11(3)<------ZmHOX2a(1)    --------->ETT(2)          --------- -------LBD16    --------->ATHB51      --------->ZAT2 --------->MYB52(1)                   ---------- -->ZmHOX2a(1)--------->TOE2(3)        <---------At4g35610 <-----------HVH21            <----------ID1   tccggcgagagcgaatccataatttgagcgatcttgaatcgagcagaggaaaccgctaagggatcaggtcgagagccgagagagttgaagacgaaaagcg  9711000                                                                                            <------NtERF2                                                                                            ------>NtERF2                                                                                           --------->RAP2.3(2)                                                                                           --------->DEAR3(1)                                                                                         <---------At4g35610                                                                                         --------->LBD16                                              <---------HSFB2a(2)                       <---------ANAC46                                              --------->HSFB2a(2)                       <---------ANAC58            --------->ALFIN1                 <---------LBD16                            <---------ANAC58            <---------ANAC46              <---------GLK1(1)                         <---------ANAC58        <-------GAMYB                   --------->ATHB12                            <---------ANAC58<   ----------->HVH21                   <---------YAB1            ---------->DOF2    <---------ANAC46< >DAG2 <---------MYB46(3)              --------->ICU4          <------ZmHOX2a(1)  --------->GLK1(2) - >DOF2 ------>ZmHOX2a(2)    <---------WRKY38(1)               <----------ID1<------ZmHOX2a(1)       <   tctgtgtgatcgttgtggggatggattgagtcaacatagacatgatttctggattggagagaagaggaaaagaaggaaggagagtttcttgcgcggccat  9711100          --------->ALFIN1         <-------MYC3         <-------PIF5         ------->MYC2         <-------MYC2         ------->MYC3         ------->PIF5        <---------ANAC58        <------NtERF2        <---------ANAC58        <---------ANAC46       ------>NtERF2      <---------ANAC46     <------NtERF2     --------->ATERF1(1)    <---------RRTF1(1)    <---------ATERF1(1)    <---------RAP2.3(1)    <---------ERF1    <---------DEAR4(2)    ------>NtERF2    <---------RAP2.6(1)    <---------DEAR3(2)    <---------ORA47(2)   <---------RRTF1(3)   <---------RRTF1(2)   <---------RAP2.3(2)   <---------DEAR3(1)   --------->DEAR3(1)   <---------RAP2.3(3)  --------->ATERF1(1)  <------NtERF2                                                                                   ---  <---------ABI4(1)                                                                              <--- <---------DEAR4(2)                                                                              <--- <---------RAP2.3(1)                                                                             <--- <---------ORA47(2)                   <---------ANAC55(2)                 ------>ZmHOX2a(2) <-------- <---------ATERF1(1)                  --------->ANAC58              ------>ZmHOX2a(2)     <---------ICU4 ---------DEAR3(1)                    --------->ANAC58             <------ZmHOX2a(2)      --------->ATHB12 ---------RAP2.3(3)                 <------ZmHOX2a(1)             <---------ARR11(3)     --------->ICU4 -------->ANAC46               <---------REM1(1)              --------->ETT(2)           <---------YAB1 ---------RAP2.3(2)      --------->ICU4          ---------->DOF2  --------->ARR11(3)  <---------YAB1<   agacggcggcgcgtggagattggagtcatgttgatgaaggacgtaagagagtaaagggaatttgtcgagatcgtgatccatggtttttgtgattattagt  9711200 *TSS<------------CBF ------->DOF2                               --------->ATHB12 ------WRKY38(1)                           <---------YAB1          <---------TOE2(3)       <---------At4g35610 ------WRKY45                           <-------TEIL           <------------CBF   --------->ICU4 ------WRKY12                       <---------KAN4(2)--------->ANAC46     <---------REM1(1)--------->ZAT18 -YAB1                          <---------TOE2(3)    --------->ANAC58     <-----------RAV1(1) ---------TOE2(3)             ---------->DOF2        --------->ANAC58    <---------TOE2(3) --------->At4g35610   caaaggtaattggagattaagagaggttttagtaaaggtatgttcatggttgaacaagtcagaaacattgaagttgatgttgccatgtttgtgagcacaa  9711300                                      <---------AHL20(2)                                      --------->AHL20(2)                          >>>>>>>>>>WRKY6                --------->ALFIN1     --------->AHL20(2)             --------->DAG2      <------ZmHOX2a(1)            ---------->DOF2 -------->ZAP1                     --------->WOX13(1)       <-------GAMYB      >>>>>>>>>>WRKY11               --------->DAG2      <---------ANAC46    <---------WRKY18(1)           ---------->DOF2      <------MYB83       ----------->HVH21           --------->YAB1      <------MYB46(1)    --------->WRKY12           <---------ATHB12      <----------DOF2          --     --------->MYB59     --------->WRKY38(1)  --------->GLK1(2) <---------ATHB12             --------   gtctagttgggttgaaaagtgtcgaagttgaccgaggaaattaataagattccaatgataaagtcaatcgagccatcttttttgaataatcgaatcaaag  9711400                                                      <---------ARR11(3)     ------>ZmHOX2a(1)                                --------->ARR11(3)  <---------ATHB12                                   <---------GLK1(1)                            --- ------>MYB83  <---------TOE2(3)                     --------->GLK1(1)               <------ZmHOX2a(1) <---------ARR14(2)        <---------ARR14(2)      --------->YAB1                   ----------->GT1<- ------>MYB46(1)          --------->CCA1(2)       <---------YAB1               <------NtERF2     ---- ------->AtMYB61        <------ZmHOX2a(1)      --------->ICU4                <---------LBD16 -------- -->DOF2<-----------------AGL1                 --------->GLK1(2)<<<<<<<<<MYB98 --------->LBD16-------   accaatcctgtccagttaatgtaataggatatatggcattaacaacgagattatgatatcttataagttaggggaattgtccgcataggaaaaaaacaac  9711500                                   --------->LBD16                                  <---------ANAC58                                  <---------ANAC46                                  <---------ANAC58 ------>At5g28300                 ----------->GT1        <---------At4g35610 --------MYB52(1)                 <---------ANAC55(2)    --------->At4g35610                 <------- ------->GT1                    <---------------------WRI1                                  --------- ->MYB46(3)           ---------->DOF2    --------->MYB46(3)                                 <-------- -->MYB52(1)       ------>ZmHOX2a(2)    >>>>>>>>>>>>>>>>>LFY<-------TEIL          ------>ZmHOX2a(2)   cgttaatcgtttgaacattgatctaaaagacttggtccgtgaaaccaatgtggtttttgagctacattcttcaattacacttgatcgtttctaatatttt  9711600  <-------TEIL             --------->REM1(1)                                   <----------DOF2 --YAB1             <---------CCA1(2)             <----------DOF2      --------->ANAC58 >AHL20(1)  --------->ANAC58                   <---------AHL20(2)      --------->ANAC58             - -AHL20(1)  --------->ANAC58                   <-----------GT1        --------------->AtSPL8      ---   tgggttcaactcggaagcacttctatcttacatcatatgtgtttcatattttctttgctaaaacttcatatgcaagtacttctttgaaaaatgtaatggt  9711700  Previous    Next  AGI:  At3g26500.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G12970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64249.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype (InterPro:IPR003591) Range:  from: 9709346    to: 9711201    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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