Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ----------->GT1                                      <---------AtMYB61                                      --------->ALFIN1                                    <---------ZAT2                                    <---------At4g35610    --------->YAB1                            <---------HSFB2a(1)            --------->ATHB12                         <                            --------->HSFB2a(1)     --------->ANAC58                             <---                        --------->ANAC58 <---------ANAC46  <--------ATHB1                       <----                        --------->ANAC58 <---------ANAC58  <---------ICU4                       -----                        --------->ANAC55(1)----------->HVH21                                    -----        --------->At4g35610 --------->HSFC1(2)      --------->ANAC58                           <-----   <----------DOF2      --------->ANAC46 <---------ANAC58 <---------ATHB12                     ------ -----DOF2      <---------YAB1    <-----------RAV1(2)     --------->ICU4                 --------->TOE2(3) -GT1   <---------At4g35610 <---------HSFC1(2)    ---------->DOF2                        --------->TOE1(3)   ttgtgctttctgctaaatttgattacacgaaatttctcaggtggtgtgacaaaaaagccaatgatttcatttctcaaggtaatcccctaaaccttaaaaa  9705000                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                                 --------->ANAC46                                          <---------ALFIN1                       <---------ALFIN1                                          --------->AtMYB61                    <---------ALFIN1                                         --------->MYB46(3)               ------>ZmHOX2a(1)    --------->At4g35610                 -------->P                       --------->TOE1(2)    <---------At4g35610                ------->GAMYB                    ------>ZmHOX2a(2) -----------GT1                       --------->MYB46(3)               <------ZmHOX2a(2) ------ICU4---------->DOF2   <---------AHL20(2)                       <---------ARR14(2) -----AHL20(2)               <---------YAB1                           <---------ARR11(3) ---->AHL20(1)       <-----------GT1  <---------MYB111(2)             --------->ARR11(3)          <-- ---->AHL20(2)      --------->AHL20(2)<---------MYB55(2)              --------->ARR14(2)    --------- ----AHL20(2)  --------->AHL20(2)<-----------GT1                      <---------GLK1(2)------------>CBF --->AHL20(2)----------->GT1<---------AHL20(2)                        --------->AGP1 --------->ZAT14   aattacatctgagaaaagaaaataaactatttttattacaacaaccactcgtatatatgtttctctataacagatcctgctacacactccacaatcgaaa  9705100                           ------------>CBF        --------->HSFC1(2)        <------------CBF                <----------DOF2                --------->ANAC46           ------------>CBF      <----          <---------ARR14(2)    --------->YAB1 --------->ANAC58           --------->MYB46(3)   ------          --------->ARR14(2) --------->WOX13(1)--------->ANAC58<------ZmHOX2a(2)          <---------YAB1 --------DOF2   <---------DAG2 <---------ATHB12--------->ANAC55(2)------>ZmHOX2a(1)     <-----------GT1 >YAB1---------->DOF2 <-----------GT1  <----------DOF2        <---------ARR14(2) <---------TOE2(3)  <   ctttcagacaaagaactgcttttttttccttcaatcaaactcttttctcacgaaacttcacatcgatcctggtcgaaccaattgacgaaattaccatcgt  9705200                            --------->DEAR3(1)                          --------->MYB52(1)                         <---------ALFIN1                       <---------ALFIN1                       --------->DEAR3(1)                       ----------->RAV1(1)                      --------->ATERF1(1)                      <------NtERF2                     <---------RAP2.3(1)                     ------>NtERF2                     <---------ATERF1(1)                    --------->RAP2.3(3)                    --------->RRTF1(2)                    --------->RAP2.3(2)                    --------->PCF2                    --------->ANAC46                    <---------TCP16(1)                    <---------TCP20                    --------->DEAR3(1)                   --------->ATERF1(1)                   --------->RRTF1(1)                   --------->RAP2.6(1)                   --------->ERF1                   --------->RAP2.3(1)                  <---------RRTF1(1)                  <---------DEAR4(2)                  --------->LBD16                  <---------ATERF1(1)                  <---------RAP2.6(1)                  <---------ERF1                  <---------ORA47(2)                  <---------DEAR3(2)                  <---------RAP2.3(1)                  ------>NtERF2                 <---------RAP2.3(2)                 <---------ATERF1(2)                 --------->DEAR3(1)                 <---------RAP2.3(3)                 <---------DEAR3(1)                 --------->ATERF1(2)                <------NtERF2                <---------LBD16                --------->ATERF1(1)                --------->RAP2.3(1)               <---------RAP2.3(1)               <---------ATERF1(1)                                                      --------->LBD16               ------>NtERF2--------->DREB2C(2)                                        --------->ANAC46              <---------DEAR3(1)                 --------->MYB52(1)                    --------->LBD16             --------->ATERF1(1)                ----------->HVH21                     <---------LBD16 -----MYB52(1)--------->DEAR3(1)          <---------ANAC58                            --------->LBD16 --->TOE2(3)<-----------HVH21             <---------ANAC58                           <---------LBD16 ---------At4g35610<------NtERF2   <----------DOF2      --------->At4g35610 ----------->GT1     -----   taagctctctctaccgtcgccggcgccacaccggcatctttctggcgaacttgacggaggctgaattcaaactgtacaacgtaatttccccggagaccat  9705300                                                   --------->CCA1(2)                                                  <---------ARR14(2)   --------->LBD16                                                --------->LBD16      <---------LBD16                                             --------->MYB52(1)     --------->MYB52(1)                                        ------>NtERF2              --------->MYB52(1)                                        --------->LBD16           ----------->HVH21                                       <---------LBD16         --------->LBD16                                       --------->LBD16  <---------GLK1(2)                                   <-----------GT1--------->ARR14(2)-------->P                              ---------->ID1<---------ARR14(2) ------>NtERF2                         --------->GLK1(2) <---------SPL7    <---------LBD16                 <-------    --------->LBD16     <---------GLK1(2)<------NtERF2  --------->ARR14(2)        <-------TEIL ------->CBF          --------->LBD16 <---------LBD16   <---------ARR14(2)--------->At4g35610<-------   caattcccgatttcgactaaaacccagaatttgtttttttcccggcgaaccggatacgaattctccggctaaccggagatgaagttcatggaattagggt  9705400                                                                                                    <                                                                                                    =                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                         --------->WOX13(1)               <---------ZAT14                                                         <---------ATHB12      <<<<<<<GRF7                                                                    --------->WOX13(1)    ----------->HVH21                                                       ------>ZmHOX2a(1)    <---   <---------MYB59                                 <---------ATHB12         =========================  ----------->RAV1(2)           --------->MYB59   ------>MYB46(1)           ========================= --TOE1(3)     <---------REM1(2)<---------TOE2(3) ------>MYB83          --------->ARR14(2)       <--- --TOE2(3)     --------->ZAT14  --------->DAG2 --------->MYB46(3)       <---------ARR14(2)      <----   ttcgacctgacacattctacactgtggaatcagtaaggtagaagacagaaccaatcgtctctctcaaaatttcgaatcctctgttttcaatcaatctcag  9705500 ----------DOF2 =======================================bZIP_DOF           ------>ZmHOX2a(2) ---->ZmHOX2a(2)                                         <---------ARR11(3) -------RVE1(1)                                         --------->YAB1 ----ZmHOX2a(2)                                       XXXXXXXXXXXXXXXXXXXX>MIR406 ------AGP1                                     --------->ATHB12 ----->AGP1<---------MYB52(1)                  --------->AHL20(2)                      <---------ARR11(3) ----->ARR14(2)                            <---------YAB1--------->ARR11(3)            --------->ARR11(3) ----->ARR11(3)                          <---------At4g35610                          <-----------GT1 ------ARR14(2)                --------->ARR14(2)     <---------WOX13(1)              --------->RVE1(1) =====HOX2a_HOX2a             ===========================bZIP_DOF                --------->ANAC46 ====HOX2a_HOX2a              --------->TGA1a  <---------AHL20(2)           --------->ARR14(2) ------ARR11(3)              <---------TOE1(2)<----------DOF2               <---------ARR14(2) -----CCA1(2)                --------->LBD16  <---------WOX13(1)      --------->ANAC46--------->CCA1(1)   atcttttgactctgttttgttttaaaattcccaggtctgtgtcttctgatttattgaatgatcttgtaatccaagtcaaatccacaaaataccttcttca  9705600                    <-----------RAV1(1)                  <---------ANAC46           <---------ANAC58                               <---------AHL20(2)        <-----------GT1           <---------ANAC58      <-----------GT1     <---------YAB1  <---------ANAC58     --------->ARR14(2)         <-----------GT1    <---------ANAC46   <---------YAB1        <---------ANAC58<---------At5g28300   caaggtttttttttcttgttttgtgttgtttcttataacatttcatgttttgattctgatttttttgtgtttcttggcaatgcaatttacagtttccgat  9705700                      <---------ARR11(3)                      --------->ARR11(3)                  ---------->DOF2                                                            --------             <---------ANAC58                                                               ---------             <---------ANAC58                                                              --------->LBD16             <---------ANAC46          --------->ANAC46               --------->WOX13(1)  --------->LBD16         <---------ANAC58              --------->ANAC58           --------->ANAC58       <---------LBD16         <---------ANAC58              --------->ANAC58           --------->ANAC58      <---------LBD16   gttatccaaatgcttacgtttaaagaacttagtctcttcacaagaaacagaaacctctcaagaacagcaagtcattcaacttgttgattttcccggtgaa  9705800                                                                                           <---------                                                                                           --------->GLK1(2)                                                                                    --------->ZAT2                                                                                    <---------At4g35610                                           <---------ATHB12                         <---------ZAT2                                <---------ANAC55(2)                              --------->LBD16                                --------->ANAC58                                <---------ANAC46                                --------->ANAC58                                <---------ANAC58                                --------->ANAC55(2)                        --------->MYB52(2)       -                                <---------RAP2.6(2)            --------->ZAT14  <---------ANAC58    -                               --------->RAP2.6(3)    --------->ZAT14   <---------SPL7     --------->ARR11(3)                               <---------At5g28300    <---------ZAT18 <------NtERF2----------->RAV1(1)     <----------DOF2           <---------LBD16        <---------At4g35610 <-------TEIL     <---------ARR14(2) --->HVH21                   <---------MYB52(1)       --------->At4g35610 --------->SPL7   --------->ARR14(2) >At5g28300  <----------DOF2<-----------HVH21       --------->ZAT14  <---------LBD16--------->At4g35610   acagaagcttttgagctttgtgctaagttctgttacggcatcacaatcactctctgtgctcacaatgtagtcgcggtacgttgcgcagcagagtatctag  9705900  Previous    Next  AGI:  At3g26490.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G67900.1); similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G67900.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN63893.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333) Range:  from: 9705379    to: 9707398    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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