Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                              <------                                          <-----------TBP  --------->TOE2(3)                 >>>>>>>GRF7                                         --------------->AGL15                            <----------                                         <----------DOF2   --------->YAB1               ------->MYC3                                         <---------------AGL15                          xxxxxxxxxxxxx                                     <-----------GT1      <<<<<<<<<ARR1                 <-------MYC3                             --------->REM1(1)            <<<<<<<<<ARR2                xxxxxxxxxxxxxx                             <---------bZIP60(1)      ------------>CBF   xxxxxxxxxxxxxxxx>smallRNA(i)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------TOE2(3)--------->TGA1a                             --------->bZIP60(1)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------O2             ------>ZmHOX2a(1)    <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->O2      --------->KAN4(2)      <---------TGA2(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    xxxxxxxxxxxxxx     <---------KAN4(1)  ----------->GT1----------------->AGL3       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------YAB1     <---------TOE1(3)<---------------AGL15      --------->ZAT6 ----------->HVH21 <---------YAB1        <---------TOE2(3)--------------->AGL15  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ctcttgattattctccttagggtttaaggttacatcatgtttccttttataggcattacaatcttagtgacactagggttttcactgacacatgtcaggt  9698400                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         --------->At4g35610                                                         --------->ZAT2                                                         <---------ZAT2                                                         <---------At4g35610                                                    <---------At4g35610                                                    <---------ZAT2                                                    --------->ZAT2                                                  --------->HSFB2a(2)     <----------DOF2                                             <----------DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         ------>ZmHOX2a(1)                ------>ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(i) -->At4g35610       --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------ATHB12 ---At4g35610 ----------->GT1       --------->AtMYB61<---------ALFIN1     ------>ZmHOX2a(1)    <----- -HVH21------>ZmHOX2a(2)           --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <------- xxxxxxxxxx>smallRNA(le3)        <-----------GT1  <---------HSFB2a(2)     =============HOX2a_HOX2a xxxxxxxxx>smallRNA(s2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ---------->ID1--------->YAB1 xxxxxxxxx>smallRNA(si3)    ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(2)   ctctattgatcctagacagtcaaaacggttttgtaaaaccactccttcttttccagcacagctccttgtttttgtcctttgatccaatcttgatgtgctt  9698500                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->At4g35610                                  --------->At4g35610                                     <---------At4g35610                                  --------->ZAT2                                    <---------TOE2(3)                                  <---------At4g35610              <-------GAMYB    <---------TOE1(3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxx                                  <---------ZAT2        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      ---                             <---------MYB52(1)        <---------ZAT18             xxxxxxxxxxxxxxxxxx                       ----------->HVH21               --------->ZAT18           <----------DOF2  <--      ---------->ID1 --------->At4g35610             <---------DEAR3(1)         <---------ANAC58  <-- -----DOF2 <----------DOF2  <-------GAMYB          --------->ARR14(2)           <---------ANAC58<xxxx -----------------ANAC81   <---------MYB46(3)      <---------ARR14(2)    --------->ATHB12--------->MYB52(2)   ttggttttgtcttcttttgcagtagatgaccgttggagctgagagttgtttagggtctgcgcttgggcctgttgtttattgggcttgaggtttgctgcat  9698600                                                                                      --------->At4g35610                                                                                      --------->ZAT2                                                                                      <---------At4g35610                                                                                      <---------ZAT2                                                                                 <------ZmHOX2a(2)                                                                                <-----------HVH21                                                                           <-----------HVH21                                      ----------->RAV1(2)               <---------ANAC58                               <---------ICU4                           <---------ANAC58                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <---------At4g35610       ------>ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  ====================================HOX2a_HOX2a       ---------->ID1xxxxxxxxxxxxxxxx>smallRNA(i)                ------>ZmHOX2a(1)    --------->ZAT14 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->At4g35610        =======================HOX2a_HOX2a xxxx>smallRNA(le3)  <---------HSFC1(2)                          <---------At4g35610  <---------ZAT14 ------>TOE2(3)    <---------GLK1(2)  <---------At4g35610  --------->At4g35610 --------->At4g35610 xxxxx>smallRNA(le3) --------->HSFB2a(1)                   <---------At4g35610 <---------At4g35610--- ---------------AGL2 <---------HSFB2a(1)             <----------DOF2--------->At4g35610     <-------- ---------------AGL1 --------->HSFC1(2)             --------->TOE1(3)   <---------ANAC46  ----------- xxxxxxxxxxxxxxxxxxxsmallRNA(le3) <-----------HVH21 --------->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tctcaatttggcccaatctcagaaccttcttgataatgtcatctgaagagtttacctttacagcttcctctgcttcgtgtccgatcacagctctgatctg  9698700                                                                                                   <-                     <---------MYB46(3)                                                            --                   --------->ZAT2                                                                  <-                   <---------ZAT2                                                                  <-             --------->ARR14(2)                                                                   <--             ------>MYB83                                                                        <---             ------>MYB46(1)                               ------>MYB83                      <XXXXXXX             <---------ARR14(2)                            ------>MYB46(1)                   --------            --------->WOX13(1)                           ------->GAMYB                       <------- ------>ARR14(2)   <---------At4g35610                  --------->MYB46(3)                 <--------- -ARR14(2) --------->MYB46(3)                      --------->YAB1                          --------->TOE2(3) >HVH21    --------->AtMYB61            <-------TEIL  <-----------GT1              <---------TOE2(3)   gttcttctcttcaccaatccgagctgttgtctcaacacaagatgcattctctctaataaccaactcatccagtttatttcttcttaatgttttctttaat  9698800  --------->ARR14(2)  <---------ARR14(2)  <---------GLK1(2) --------ANAC46     --------->TOE2(3) ------->ANAC55(2)  <---------DAG2 --------ANAC55(2)  --------->TOE1(3) --------TOE2(3)    *TSS -------LBD16    <-----------GT1                                                           <------ZmHOX2a(1) --------GT1  <---------ARR11(3)                                       ---------->DOF2  <xxxxxxxxxxxx XXXXXXXXXXXXMIR866-3P  <---------YAB1                           >>>>>>>>>TBF1--------->TOE2(3) ->AHL20(2)   <---------AHL20(1)                              >>>>>>>>>TBF1 --------->GLK1(2)      -- --AHL20(2)  ----------->TBP   <---------ANAC46      ------->GAMYB----------->GT1    --------->MYB59 -DOF2   ------------>CBF--------->ZAT6 <-----------GT1   --------->LBD16  <---------GLK1(2)---------   tacggattttgcacaatatataccttatcactgatgtgtttgtaacaacttacaacagtccgaagaagaagaaaaaagaatctcaattaggcaggattca  9698900                                                                                <---------At4g35610                                                                                <---------ZAT2                                                  --------->ATERF1(1)           --------->ZAT2                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  <------NtERF2                 ----------->RAV1(2)       <---------At4g35610                      <---------ANAC58                --------->At4g35610       --------->At4g35610                      <---------ANAC58             --------->At4g35610       --------->ZAT2                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------At4g35610 xxxxxxxxxxsmallRNA(le3)           <-------TEIL <---------ANAC46       --------->ICU4           xxxxx ------->HSFB2a(1)         <-----------GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <------ >ARR14(2)                 --------->YAB1      <---------LBD16       --------->YAB1      ------>ZmHOX2a(1)   aacgttcttagctccctacagttttcaaataacaatatacattcgatatggcgggagcgtaatggaaggaagcatgatgagcagctgattcctgcaacta  9699000                           --------->AHL20(2)                     ----------->GT1                  --------->ANAC58                            <---------SPL7                  --------->ANAC58                         ----------->RAV1(1)                 --------->DAG2           --------->WRKY18(1)<xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------HVH21       <---------AHL20(2)          ---------->DOF2  <-----------GT1          ----- xxxxxxxxxxx>smallRNA(s) --------->AHL20(2)      ---------->DOF2 --------->ANAC46               ----- ---MYB52(2)    ---------->DOF2          <-----------HVH21<----------ID1 <---------YAB1         -----   aactcgtcaattggatggaaaagcaaatttaaaataaactctcggtcattcgaaaggaaagcgacatacggtattactattactcttaaacatggtttac  9699100                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                 <---                                                                                            <--------                                                                     <----------DOF2       <---------AHL20(2)                                                                 ------>MYB46(1)           <---------AHL20(1)                                        --------->ANAC58         ------>MYB83              --------->AHL20(2)                                        --------->ANAC46         -------->P                --------->AHL20(1)                                        --------->ANAC58       <---------MYB59         <---------AHL20(2)          <-------TEIL             ---------->DOF2             --------->AtMYB61       --------->AHL20(2) ---->ANAC58               <---------LBD16    <----------DOF2  <---------MYB111(1)    <---------AHL20(2) ---->ANAC58    ------->TEIL  <------ZmHOX2a(1)         <---------YAB1     <---------AHL20(2)   ----- ---->ANAC46 --------->AtLEC2--------->LBD16  <---------DAG2   <---------MYB46(2)     --------->AHL20(2)   gcccttaacaaattcatgcatcttcaaattcaggaaaaaaagaagcaacttttgcattttgatgacctaccctttattttttcttgaatttaatttaata  9699200 --------AHL20(1)                                                            <------ZmHOX2a(1) --------AHL20(2)                                --------->At4g35610     <---------YAB1             < ------->AHL20(1)                             <---------At4g35610      <---------ICU4              <- ------YAB1               ----------->GT1     --------->At4g35610      --------->YAB1----------->GT1- -AHL20(2) --------->AHL20(2)         <---------TOE2(3)               --------->ICU4 --------->YAB1<- ---->AHL20(2)---------->DOF2      <---------AHL20(2)                 <---------ATHB51           ----   ttatattcagaaaataaaaagactcaaaatgtaacatattaatgtatgagctgcttaacaaaacaaaaacaaattatgaggagctaatagtaaaaagttt  9699300  Previous    Next  AGI:  At3g26486.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 9698820    to: 9699135    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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