Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <<<<<<<<<                                                                                            ------>NtERF2                                                                                           --------->ANAC58                                                  --------->ANAC58                         --------->ANAC46                                     <---------At4g35610                                   --------->ANAC58                      <---------ANAC58            --------->ANAC58                     <--------P     --------------->AGL15           --------->At4g35610                      -----------------------  <---------YAB1      <---------ANAC58   ---------->DOF2              <---------MYB52(1) <---------ATERF1(1) -DOF2 <---------ANAC46            <-----------RAV1(2)            <---------ARR14(2)<---------TOE2(3)   caatatgcttcgtttagcaatgttacgagcgatttcttcagatgaaagttgaacgaaatggaatggagtatcgttatggtgattttcaggtagacgccat  9672400                                                  <---------ALFIN1                                                 <-----------------AGL1                                          ---------->DOF2   <----------DOF2                                       <---------At4g35610 <---------ANAC58      ----------->HVH21 <<<<<<<<LFY                 --------->LBD16     <-----------------AGL2      <---------ANAC58 >TaNAC69(2)   --------->ZAT14         --------->At4g35610 <---------ANAC58  <---------ANAC58   tggagagactcattctctgcaatctcttctccgaagagttcagctaaagcttccacttctggctttctgaagtctaatagcctgtgatagaagacacaca  9672500                                         --------->TOE1(3)                                  --------->ANAC58                                  --------->ANAC58                             --------->LBD16                             ----------->HVH21                            --------->LBD16                           ----------->RAV1(2)         ------->GAMYB <----------ID1                           <---------LBD16          ----------->RAV1(1)              *TSS  --------->MYB52(1)                      <----------DOF2    --------->TOE2(3)      ---------->DOF2     -----------------   gaaaccacatctctctctctctctctttcccctgaaacgaaaaccctaatttgacaacagaactgagaaagaagacgaagacggagaaggaagaaacgaa  9672600       ------>NtERF2      --------->DEAR3(1)     <------NtERF2     --------->ATERF1(1)     --------->RAP2.3(1)    ------>NtERF2<----------DOF2                           <---------AHL20(2)    <---------ATERF1(1)                          ---------->DOF2                                  <--    <---------RAP2.3(1)                         <---------ATHB12     <---------ALFIN1        <-------   <---------DEAR3(1)                       ------------>CBF      --------->PCF2            <-------- ------->ANAC81 <---------DAG2            <---------PCF2  --------->AHL20(2)       ----------->TGA1<-   gaacgacggcgactaaaaccttttcttcaaaacccttatacatgggcccaataaagcccatttattcaggcccacttgtacttaaatgacgaaattaccc  9672700          --------->ARR14(2)                            --------->At4g35610     <-----------HVH21            <---------ANAC58      <---------At4g35610  --------->At4g35610             <---------ANAC58    <---------ZAT14  <---------At4g35610         <---------MYB52(1)   <---------ANAC46                 ------>ZmHOX2a(1) --------->MYB52(2)        <------NtERF2           <---------ANAC58          <---------GLK1(2) ---------HVH21   --------->CCA1(2)            <---------ANAC46             --------->At4g35610 --At5g28300     <---------ARR11(3)            <---------ANAC58             <---------At4g35610 ---GT1   <---------ARR14(2)<---------ANAC46   <---------ANAC58             <---------ZAT2 --------MYB52(1)--------->ARR11(3)<----------DOF2 <---------ANAC58      <---------At4g35610       <-   cgttagctgtcgaatacgagatatatcgcgtcgtttgctttcacttgtgtcttgtgtgttctgccaaagtttctctgcagcttctcctcttctcagaaat  9672800                            --------->TOE1(1)                            --------->TOE2(1)                          ------>ZmHOX2a(2)                         --------->GLK1(1)                         <------ZmHOX2a(2)                 <---------ANAC58                                                                   -     <---------ANAC58   <---------ARR11(3)                                                   <-------     <---------ANAC46   <---------ARR14(2)              <---------ANAC46                     <-------     --------->ANAC55(2)--------->ARR14(2)           <---------CCA1(2)                       <-------     <---------ANAC55(2)<---------AGP1        <---------GLK1(1)                          <---------ANAC58     <---------ANAC58   --------->ARR11(3)  --------->ATHB12                        --------->ARR14(2)     <---------ANAC55(1)<---------ARR14(3)  <---------ICU4                          <---------GLK1(2)  <---------ARR14(2)    --------->ARR14(3) <---------YAB1                     --------->HSFC1(2)    -  --------->ARR14(2)   <---------CCA1(2)   <---------ATHB12    <----------DOF2<---------HSFC1(2)    < --------TOE2(3) <---------ANAC58          --------->ICU4      --------------------->WRI1<---------ANAC58   tagggttccgtctcaaattacgagcagatctcgtactctctggtaatgatttctcgtttcttatactttgtttataccgaagtatcgattcgcttgcatg  9672900                                                                                  --------->REM1(2)                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                               <---------ANAC58     <---------YAB1                                      <---------YAB1    <---------ANAC58 <-----------TGA1--------->GLK1(2)                     --------->YAB1      <---------ANAC58 -------->bZIP60(1)                                   --------->ICU4  <-----------RAV1(1) --ANAC58       <---------ARR14(2)                --------->LBD16   --------->CCA1(2) --AtLEC2       <---------GLK1(2)                --------->ANAC58  --------->ARR11(3)               < --ANAC58  <-----------GT1                       --------->ANAC46  <---------ARR11(3)    <------ZmHOX2a(2) -------->bZIP60(2)                              --------->ANAC58  --------->ARR14(2)   <---------ARR11(3) ---------bZIP60(1) <---------YAB1              <---------LBD16    <---------ARR14(2)   --------->ARR11(3)   tctcgtcatctttgtaccgattctgatttgaagtttctagggtttaccatcgcgcaattacgatttgtagatatgttgtttgcgagtagagatcaattga  9673000                                                                                     --------->At4g35610                                                                         -------->ATHB1                                                                         <---------ICU4             -                                                                         <---------AHL20(2)         <                                                                        <---------YAB1             <-                                                                     ------------>ATHB5       <------                                                                 --------->ANAC58    <---------At4g35610                                                            <---------ANAC58  <-----------RAV1(1) ---                                                            <---------ANAC58  =======================                                                        --------->GLK1(1)-------->HAHB4       -------           --------->ARR14(2)                          --------->ARR14(2)--------->ATHB12     <------           <---------ARR14(2)                          <---------GLK1(2)--------->ICU4        -------      <---------ANAC46                                 <---------ARR14(2)--------->ATHB51    <-------   --------->TOE2(3)                                 ----------->ARR10  <---------ATHB51 <---------ANAC46 -----------GT1    <---------ANAC55(2)      --------->CCA1(2)    --------->ANAC58<---------REM1(1)===   aattaccttcgtggatttgtctcgtaagcgcgaaccatgtttagagaaacgagttcagatttgcttcacgcttaattattgtgttgtagctgtgtatatc  9673100           <---------ANAC58           <---------ANAC58       <---------At4g35610       --------->At4g35610       --------->ZAT2       <---------ZAT2      <-----------RAV1(1)     ------>ZmHOX2a(2)                                                                            <--    <---------GLK1(1)                                                                             ---    <---------At4g35610                                                                          ----   <---------ARR14(2)                                                                            ----   --------->ARR14(2)                                                                            <---   <---------ARR11(3)                                                                           -----   <---------AGP1                                                                               <---- -------->HSFB2a(2)                                                                             ----- ---------HSFB2a(2)                                                                             <---- --------LBD16                                                                                  ----- ---ARR14(2)                                                                                    <---- -------->RAV1(2)                                                                               ----- =========RAV                        --------->ANAC58                                 <---------ARR11(3) -->ARR14(2)                <---------HSFB2a(2)                                       --------->ARR11(3) ---ARR11(3)        <------MYB46(1)  --------->ANAC58                    <---------MYB52(1)    <----- -->ARR11(3)        <------MYB83<----------ARF1<---------TOE2(3)       <---------MYB46(3)     ------- --CCA1(2) <---------ANAC46 --------->HSFB2a(2)<---------TOE1(3)<----------DOF2 <---------HSFB2a(2) =================RAV      <---------LBD16    <-----------GT1   <---------DAG2  --------->HSFB2a(2) -   ttctggatctgctgcgtgtgtttggtttttctgggagtcaagtcatattaacgttgttcaaaaacacttttggctgtttgttttagaagatgtctgaaga  9673200         <---------MYB52(1)        <-------GAMYB   <---------SPL7 -------LBD16<----------DOF2 --->ZmHOX2a(2) ----->ARR14(1) ----->CCA1(2) ---ZmHOX2a(2) ---->ARR11(3)               <---------ANAC58 -----ARR11(3)               <---------ANAC46 ---->ARR14(3)           <---------ANAC58 -----ARR14(3)           <---------ANAC58 ---->ARR11(1)        <---------ZAT18 -----ARR14(2)     <---------MYB46(3) ---->ARR14(2)    <---------AtMYB61       ----------->HVH21                  <-----------HVH21   ---- ----GLK1(1)<---------ANAC58 <---------ANAC58                      <---------HSFB2a(2)          ----- ---->ARR10 <---------ANAC58 <---------AtLEC2 ------>ZmHOX2a(2)    --------->HSFB2a(2)     ------>NtERF2 -------->LBD16--------->ATHB12    <---------WRKY38(1)          <----------DOF2<---------WRKY38(1)   tccggagtaccgttgcttcattggtgggcttgcttggacaacgtctgatcgtggtctcagagatgcctttgagaagtatggtcacctcgttgaggccaag  9673300  Previous    Next  AGI:  At3g26410.1    Description:  methyltransferase/ nucleic acid binding. similar to unknown [Populus trichocarpa] (GB:ABK95153.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43446.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78018.1); contains InterPro domain tRNA guanosine-2' (InterPro:IPR016691); contains InterPro domain Putative RNA methylase (InterPro:IPR000241); contains InterPro domain N6 adenine-specific DNA methyltransferase, N12 class; (InterPro:IPR002296) Range:  from: 9670653    to: 9672585    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g26420.1    Description:  ATRZ-1A; RNA binding / nucleotide binding. similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.2); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding / double-stranded DNA binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.1); similar to RNA-binding protein RZ-1 [Nicotiana sylvestris] (GB:BAA12064.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 9672754    to: 9677242    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g26430.1    Description:  GDSL-motif lipase/hydrolase family protein. similar to ATFXG1 (ALPHA-FUCOSIDASE 1), alpha-L-fucosidase/ carboxylesterase [Arabidopsis thaliana] (TAIR:AT1G67830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42511.1); contains InterPro domain Lipase, GDSL; (InterPro:IPR001087) Range:  from: 9672754    to: 9677164    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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