Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------YAB1                 <---------ICU4                --------->ICU4                                                     <---------LBD16 <-         --------->AHL20(1)                                           <---------TOE2(3)           ---         --------->AHL20(2)                                          --------->MYB52(1)           <--         <---------AHL20(2)   ----------->GT1                      <---------MYB52(2)--------->LBD16<        --------->AHL20(2)   ----------->GT1                 --------->YAB1      --------->ARR14(2)-- --------->GT1  <---------YAB1<----------ID1<------ZmHOX2a(1)--------->TOE2(3)   <---------ARR14(2)--   gtagttaaaaaaaaattgattattgtaagaaggggaaaaacatgaaggactacaagtctacaacgataaactaacgctgtctggttccggtttacagttc  9471800                                                          --------->ANAC58                   --------          <---------ALFIN1                                --------->ANAC58                  <-------- --------ARR14(2)                                        --------->SPL7--------->TOE1(2)    --------- ------>At4g35610                                    --------->HSFB2a(2)                    <-------- -------At4g35610     ----------->HVH21              <---------HSFB2a(2)                    --------- ------ZmHOX2a(2)     --------->ANAC46        <-----------GT1  <---------MYB52(1)           <-------- ------->ARR14(2)----------->HVH21         <---------ARR14(2) <-------GAMYB               ----------- ------->AGP1   <-----------HVH21          --------->ARR14(2)----------->GT1           ------->GAMYB   agatccaaacccaaaccctgtaacccgacccgattaatctcatcgaattctccgtctcgaacgccgttacaatccaacgagtttctcaacccaagattct  9471900                                                                              --------->ZAT18                                                                              --------->ZAT14                                                                            ------->MYC3                                                                            <-------MYC3                                                                            <-------MYC2                                                                            ------->PIF5                                                                            <-------MYC4                                                                            ------->MYC2                                                                            ------->MYC4                                                                            <-------PIF5                                                                           --------->TGA1a                                                                           <---------ANAC55(2)                                                                           <---------ANAC46                                                                           <---------TGA1a                                                                           <--------ABF1                                                                           <---------O2                                                                           --------->O2                                                                          ------>NtERF2                                                                         <---------ALFIN1                                                                        <------NtERF2                                                    =================================bZIP_DOF                                                 <---------DOF5.7(2)  --------->bZIP60(1)                                               --------->DOF5.7(2)    <---------bZIP60(1)                                               <---------MYB52(1)<---------ANAC58     <---------ARR14(2)                       =======================================MYC_MYB     --------->ARR14(2)                       <-------GAMYB      <---------ANAC58           <--------    <---------MYB52(1)                     --------->ABI4(1)     --------->MYB52(2)         --------- ->GLK1(2)                           ----------->RAV1(1)       <---------MYB52(1)           <-------- -ARR11(3)                         <---------At4g35610      <------------AtMYB77       --------->LBD16 >ARR11(3)               --------->ZAT6<---------ALFIN1--------->ANAC58<-----------------PIF3(1) -GLK1(2)            --------->DOF5.7(2)   ------>NtERF2    =========================MYC_MYB--------- >ARR14(2)           --------->At5g28300  --------->DEAR3(1)--------->MYB46(3)<---------ZAT18 -ARR14(2)          ----------->GT1--------->At4g35610 --------->ANAC58------>NtERF2  --------->ANAC55(2) >ARR10  ------>ZmHOX2a(1)        --------->ANAC46  <----------DOF2 <-----------HVH21 --------->ANAC46   gactccgtttcctcttcttagacggtaactctccctcagcaacaccgccgttaactttcgcaaccgttcgtgtcgccacgtgtactctccgtaatatctt  9472000                                                                                 <---------ARR11(3)                                                                               --------->DOF5.7(2)                                                 <---------DEAR3(2)            <---------MYB52(1)                                                 <---------MYB46(3)           <-------GAMYB                                              ------------>AtMYB77     --------->ARR11(3)                                             --------->ETT(2)          --------->ARR14(2)                                             <---------WRKY12          <---------GLK1(2)                         <---------DOF5.7(2) ----------->HVH21         <---------ARR11(3)                       <---------MYB52(1)    <---------ETT(2)          <---------ARR14(2)         <---------ALFIN1<---------At5g28300 --------->WRKY12        ----------->ARR10        --------->MYB46(3)    --------->SPL7 --------->DEAR3(1)    <---------MYB52(1) -ARR11(3)             --------->DOF5.7(2)   <---------DEAR3(1)   <-----------HVH21 >ARR11(3)            <-------GAMYB        --------->LBD16        <-----------TGA1 -AHL20(1)         ------>ZmHOX2a(1)       <-----------HVH21   <---------At5g28300 >AHL20(1)  <---------ALFIN1<---------SPL7<---------ANAC46     <---------DOF5.7(2)   gaaaaactcatccacctcttcctccgttaccgtccgaacaacttccgtcgacggtttccctctgttaccgtcagattttccgttatcttcttctacgcgt  9472100                                                          <---------At4g35610                                                         <---------TOE1(3)                                                   <---------ANAC46                                                  <------NtERF2             --------->ATHB51                                                 ------>NtERF2              --------->AHL20(2)                                                <---------ANAC46            <---------AHL20(2)                                                --------->DEAR3(1)      <---------AHL20(2)                                                <---------DEAR3(1)      --------->AHL20(2)                                               <XXXXXXXXXXXXXXXXXXXXMIR4228 --------->ATHB12                <---------MYB46(3)            ------->GAMYB             --------->ICU4         ---------->DOF2                   --------->MYB52(1)      ----------->GT1      <---------AHL20(2)      <---------------AGL15                <---------DOF5.7(2)     --------->ANAC58     --------->AHL20(2)      --------------->AGL15              --------->DOF5.7(2)       --------->ANAC58    *TSS  <----------DOF2                       --------->TOE2(3)<---------TOE2(3) <---------AHL20(2)   tcttctttcttcaaagagttgttcatgttagccagaagaaaatgttaacggcgtcgtttaagcttagtcaagaaaaaattatttgctgattttattttgc  9472200                                                                            <---------DEAR3(1)                              --------->ALFIN1                             <---------ORA47(1)                              <---------ANAC46                        <------------CBF                            <---------DEAR3(2)                      --------->AHL20(1)                 <---------YAB1 --------->ALFIN1                    <---------AHL20(1)            <--            ------->TEIL   <---------DEAR3(1)                       --------->AHL20(2)            ---       --------->YAB1     <---------MYB52(1)                        <---------AHL20(2)            ---      <---------YAB1      <------NtERF2                    --------->MYB46(3)  --------->ALFIN1   <--    --------->YAB1 ---------->DOF2                 <------------CBF--------->AHL20(2)        <-------   --------->AHL20(2)    <-----------HVH21     <---------ETT(2)    <---------AHL20(2)<---------WOX13(1)   <---------AHL20(2)   --------->DEAR3(1)     --------->ETT(2)--------->AHL20(2)   <------------CBF   taaaatttataatgaaactcttatagccgtcggtgtggaacttagacggtcgatattgtcaacaactaaataaattggacggtggagattgatgctaatg  9472300                                           <----------DOF2                                           <---------DAG2                                     ----------->HVH21                                    <-----------HVH21                                    <-----------TGA1                                   <<<<<<<<<<HY5                                   <---------bZIP60(2)                                   <---------bZIP60(1)                                   <---------ANAC58                                   =====================================bZIP_DOF                                   <---------ANAC58                                   --------->TGA1a                                   --------->ANAC46                                   --------->ANAC55(2)                                   --------->bZIP60(2)                                   <---------O2                                   --------->O2                                   <---------ANAC55(2)                                   --------->bZIP60(1)                                   <---------TGA1a                                   ============================bZIP_DOF                                   ===================bZIP_DOF                                   --------->TGA2(1)     --------->TOE1(2)             <---------TGA2(1)    <---------ICU4                ----------->STF1   <---------YAB1                 --------->RAP2.6(3) --------->YAB1                   <-----------STF1                         --------->ALFIN1 -------bZIP60(1)                <---------TGA2(2)                        ------->MYC3 ------>bZIP60(1)             --------->YAB1                   <---------TOE2(3)          --------->ARR14(2) ------>TGA2(1)           --------->ICU4<---------ALFIN1     ---------->DOF2  ----------->GT1   <---- -------TGA2(1)  ---------->DOF2----------->TGA1    <----------DOF2   <-------TEIL --------->DAG2   < --ICU4          ============================bZIP_DOF  --------->HSFB2a(2)<-------MYC3    <---------ARR14(2)   acatcatcatgcgatgttttaaagcgtaagtatcatgacgtcacactttattgacttttggaataaaggaagtccatgtgtggaaaaattggtatcggct  9472400                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               <---------At4g35610                                                                               --------->At4g35610                                                                               <------NtERF2                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              <---------DEAR3(2)                                                                             <---------DEAR3(1)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                 ------>MYB83--------->ETT(1)                                                                 ------>MYB46(1) ----------->RAV1(1)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                        --------->TOE1(2)   --------->RAP2.6(3)                                                        --------->TOE2(3) <-----------RAV1(1)                                                        --------->TOE2(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        --------->TOE1(3)xxxxxxxxxxxxxxxx>smallRNA(i)                                                     <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(s)                                               --------->ANAC46<---------MYB59<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->ARR14(2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxx          <---------ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i) ------DOF2               <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i) ---------AHL20(2)     <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------RAP2.6(2)  ---   atatttttagagtatatgtaagaaataacttttgacttcaaaagaatacacaaaataaccttggaccaaatagtatttgtcggctacagaaattttggca  9472500                                                                                                    <                                                                                                    -                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)<x                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)<xx                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)  <xx                                                                    <----------DOF2   <----------DOF2                                     <----------DOF2          --------->ANAC46     <xxxxxxxxxxxxxxxxx                       <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------GLK1(1)<xxx                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ANAC55(2)  <xxxxxxxxxxxxxxxxx                 <----------DOF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <-----------GT1<<<<<<<<<TBF1                   <-----------GT1     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <----------DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxx       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxx      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxx     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)---------->ID1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxx xxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxx ------>ICU4<-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   atagttagtctattttagcctttctctttcttcttccttcttttgtttctttttcatcttctttacgagactttagccatggagttctctttctctcttc  9472600                                --------->bZIP60(2)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <---------ARR14(2)                        --------->ARR14(2)                        <---------GLK1(2)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               xxxxxxxxxxxxxxxx>smallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ZAT6xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----------DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(le3) <---------At5g28300 xxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxsmallRNA(l2) <-----------GT1                                        <---------ALFIN1 xxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  --------->DEAR3(1) xxxxxxxxxxxxsmallRNA(si3)<-------TEIL                                            --------->AtMYB61 xxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)                           --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            <-----------GT1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                          <---------ICU4       <--- xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <-----------GT1        --------->YAB1       ---- xxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <--- xxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            ---- xxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->YAB1        --------- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <----------DOF2            xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <------------------------ANAC81   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>ZmHOX2a(1)     --------->YAB1   atctttaacacaattcatcttcttcagattcaccatgtcattttctttttctatttctctctccctctcctaaaataatcttcaccacctctcataaaat  9472700  Previous    Next  AGI:  At3g25882.1    Description:  NIMIN-2 (NIM1-INTERACTING 2) Range:  from: 9471654    to: 9472187    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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