Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                               ------                                            <---------YAB1           <------ZmHOX2a(2)        <------                                       <---------ICU4                =========================HOX2a_HOX2a  --------->ANAC46                    <---------YAB1          ---------->DOF2          ==============  --------->ANAC58                  <---------ICU4           <------ZmHOX2a(1)         ==============  --------->ANAC58                  --------->YAB1           ===============HOX2a_HOX2a------>ZmHOX2a(1) --KAN4(2)                     --------->TOE2(3)           <---------TOE1(3)         <---------ZAT18 >GT1                       <-----------GT1<-----------TGA1<---------TOE2(3) <----------DOF2  -------   acacacccaattcttcagccattgctaataaaacctcatcatcatcgtcattgttttcgctaaggaaagggatcaattcctttctagtcctctcttcccc  9426900            ------>ZmHOX2a(2)     <-------PIF5     <-------MYC2                                                                           <-------TEIL     ------->MYC3                                                                           ---------     <-------MYC3                                                                        <---------ANAC58     ------->PIF5                                                                        <---------ANAC46     ------->MYC2                                    --------->YAB1                      <---------ANAC58 --------->ZAT18                                    <---------YAB1                      <---------MYB46(3) ------->DOF2                                      --------->ARR11(3)                   --------->MYB59 --->LBD16 <------ZmHOX2a(2)                       <---------ARR11(3)                <-------GAMYB ---HSFB2a(2)             <---------YAB1    <---------At4g35610                     <---------MYB46(3) ==================HOX2a_HOX2a              --------->At4g35610            <---------------AtSPL3 =================HOX2a_HOX2a           --------->TOE2(3)       <-----------GT1 <---------DEAR3(1) -->HSFB2a(2)    ---------->DOF2        --------->YAB1    <---------MYB52(1)   --------->SPL7 -------   aagagcacgagcgatcgtagaaagccttctgatggaattcaatcttagctgaatatcatcgttttttaactcgtctataagtacggcgattgggtacaac  9427000                                                       <-----------GT1                                                    <---------ICU4                                                   <---------YAB1                                --------->MYB46(3) --------->ICU4                               ------>MYB83      <---------ICU4                               ------>MYB46(1)  <---------YAB1 ----------->GT1<---------HSFB2a(2)                              ----------->RAV1(1)<--------HAHB4------>ZmHOX2a(2)               --------->ARR11(3)         <---------At5g28300<---------ARR11(3)             <--------        --------->YAB1 --------->MYB46(3)<-----------GT1     --------->ARR11(3)             <-------- >SPL7 <------ZmHOX2a(2)     --------->AtMYB61  --------->ICU4<------ZmHOX2a(2)--------->LBD16 <----- -->MYB52(1)   <---------ARR11(3)----------->RAV1(1)--------->YAB1            --------->HSFB2a(2)   ggctcatcgatcatagacatcttcaacaacaccaacaacaaaattacagcataattataacgagatcgtaaaatcaatttccagagcccaattctcagga  9427100                         --------------->AGL15                        <---------YAB1                   --------->YAB1              --------->GLK1(2)                         <<<<<<<<<ARR2              <-----------ARR10                       --------->WOX13(1)                    ---------              <---------ARR11(1)                     --------->MYB46(3)                     ---------              <---------ARR14(2)                    ------>MYB83                            ---------    --------->WOX13(1)<-----------GT1               ------>MYB46(1)               ----------->RAV1(1) ---RAV1(2)   --------->ARR14(2)         --------->CCA1(2)                     --------->TOE1(3) -LBD16       ------->TEIL          ---------->DOF2----------->RAV1(1)         --------->TOE2(3) -ZmHOX2a(1) <---------ARR14(1)   --------->YAB1  --------->AtMYB61   --------->MYB59       ---------   gatgatcaattaggcgaatctaaattaccatttctatcaaaagataaacagaccaacaatcaaatcggaaattgggtcttacctcaacacaaacacggct  9427200                                                         ------>ZmHOX2a(2)                                                       <---------ARR14(2)                                         ----------->GT1<------ZmHOX2a(2)                                     ------>MYB46(1)   --------->ARR11(3)                                     <---------------------WRI1                    <------------CBF             ------->GAMYB           ------>MYB83      <---------AGP1             --------->ATHB12       --------->ANAC46            --------->AtMYB61   --------->GLK1(2)         *TSS              --  <-----------GT1          <---------ANAC58            <-----------ARR10        ===================== >ANAC58    --------->ANAC46       --------->TOE2(2)   --------->ARR14(2)       <---------------AGL15 >ANAC46    --------->ANAC58       --------->TOE1(2)   <---------ARR11(3)       <----------DOF2   --- >ANAC55(1) --------->ANAC58  --------->SPL7          <------ZmHOX2a(1)         --------------->AGL15 >ANAC58------>ZmHOX2a(1)  <---------ANAC58     ---------->DOF2            <----------DOF2   --------   caattttctcctcaacgaaacacaaaatttcgttcgacctacgaagaaaaaaaagaggatctaatggcgaaatgtctcttttctttattgagagcaaacg  9427300           <---------AHL20(2)          --------->AHL20(2)         <---------------AGL15        <-----------------AGL3                                ----------->HVH21     <----------DOF2                                <----------DOF2 <---------O2                                      <---------DAG2 --------->O2                                      <----------DOF2                            <------ ---->NtERF2 <------------CBF                  ------->GAMYB<---------ALFIN1                  <------ =========================MADS_MADS         <---------DOF5.7(2)  <---------ANAC46        <----------DOF2 ------>DEAR3(1)                          --------->DOF5.7(2) --------->ANAC46        <------ZmHOX2a(1) ->MYB52(1)--------->AHL20(2)            <----------DOF2 --------->PCF2          <-----------HVH21   acgacgtctttatttaattggaaccatacccttcttaaatgggctttaacgggccttttggcccacgacgtttatgctgtttcggtcaggactttacttt  9427400                                      --------->ZAT6                                                <   <-------TEIL   <-----------GT1     <-----------GT1     <---------AHL20(2)                   ------ ---DAG2 <---------ANAC58 <---------AHL20(2)              --------->AHL20(2)   <---------ICU4 <------ ----DOF2<---------ANAC58--------->AHL20(2)      <---------ANAC46      ----------->GT1        <------   tgcgattcatttcttgcaatttaccaattttatagagttttcactattccttcgtgaaatataaattcaaatgtggaaaaaacattaccgatacaaatga  9427500                                         <-----------GT1                                      <---------ICU4                <---------bZIP60(1)  --------->AHL20(2)       <---------HSFB2a(2)           <---------YAB1       --------->HSFB2a(2)           <---------AHL20(2)                                  <---------AHL20(2)  <---------HSFB2a(1)               <---------AHL20(1)                                   --------->AHL20(2)  --------->HSFB2a(1)               --------->AHL20(2)                                   --------->AHL20(1) ---------GLK1(2)                   <---------AHL20(2)                                  --------->AHL20(2) --->ATHB12     --------->bZIP60(1) --------->AHL20(1)        ------->GAMYB             <---------AHL20(2) ---YAB1        --------->TGA2(1)--------->AHL20(2)  <---------------AtSPL8 <---------ZAT14 ---ATHB12 <---------ICU4     --------->TOE2(3)     <---------YAB1        --------->REM1(2)      <---   tagaattttctaaaaatgacataacaaaatttccataatataattacatttgttataagtacaacgacaatatgtgtgtatactaacaaattaaattgat  9427600                                                         ----------->ARR10                                                      --------->TOE1(2)                                                      --------->TOE2(3)                                                      --------->TOE1(3)                                     --------------->AGL15                                    ----------------->AGL3                                    ----------------->AGL2 <---------GLK1(2)     <---------HSFB2a(2)      --------->ANAC58   <---------MYB52(2)     --------->HSFB2a(2)      --------->ANAC58   --------->MYB46(3) ----TEIL               --------->CCA1(2)     <------ZmHOX2a(1)                      <<<<<<<<<TBF1 <-   tcatcttcgagattgagaaacaaatgatatgcaagtaaaccaaaaacaggaacaaaccttagatacttcaccaattcaatcttgttcttcttcacatttt  9427700                                                                                                 <---                                                                                              -------                                                                                             <-------                --------->MYB46(3)                                                          ------>MYB46(1)               -------->P                    <---------CCA1(2)                              ------>MYB83              --------->WOX13(1)  <---------ZAT14               --------->ANAC58           --------->WOX13(1)            <---------ATHB12      --------->ZAT18               --------->ANAC58         --------->MYB46(3)            --------->MYB46(3)    --------->ZAT14              --------->SPL7          <-----------GT1           --------->ANAC46      <---------ANAC46           --------->ANAC55(2)      <---------MYB52(2)          --------->WOX13(1)    <---------------AtSPL8      <---------ANAC55(2)<------ZmHOX2a(2) ---- <---------GLK1(2)           <---------GLK1(2)              --------->ANAC46  --------->ARR14(2) ---- --------TOE1(2)<---------ATHB12<---------------AtSPL3     >>>>>>>>>>AtSR1    <---------ARR14(2) <---   gcaggttctctccaatcaaccatggctgaaagattgtgtacagacatatatcccatataaacgcgtaagctagtctctccgatcccaaataaccaatcag  9427800  Previous    Next  AGI:  At3g25800.1    Description:  PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A); protein phosphatase type 2A regulator. Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (PP2AA2) [Arabidopsis Thaliana] (GB:Q38950;GB:Q9LRZ9); similar to PP2AA3/PR65 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.2); similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to PP2AA3/PR65 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); s Range:  from: 9423825    to: 9427281    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g25805.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO42121.1) Range:  from: 9427513    to: 9429429    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version