Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           >>>>>>>>>MYB98                                     --------->ANAC55(2)                               --------->AHL20(2)                               --------->AHL20(1)          --------->LBD16     --------->AHL20(2)        <---------LBD16       <---------AHL20(2)   <---------ICU4  <---------YAB1    <---------ANAC55(2)   --------->YAB1 <---------TOE2(3)  ----------->GT1            ----------->GT1  --------->ICU4 --------->YAB1<---------AHL20(2)       --------->ANAC58                     <------- -------->YAB1 <---------WOX13(1)  --------->AHL20(2)   --------->ANAC58    <---------------------WRI1   aaaaatgatgaccggagattgatgatatcaaattaaattaagtaacatagactcacaaacgcatggtggtaatttgaagcctatgcattcaaagaatgtt  9410100                                                                                                   --                                                                                                   --                                                                                                   <-                                               <---------ANAC58               --------->ATHB12     --         ------>ZmHOX2a(2)                  ------>ZmHOX2a(1)        --------->MYB46(3)  <----------DOF2        <------ZmHOX2a(2)          <---------PCF2                   ------->TEIL      <---------ZAT6       <---------ARR14(2)          <---------PCF5             <-------TEIL --------->ANAC55(2)<------       --------->ARR14(2)          --------->TCP20         <------ZmHOX2a(1) <---------YAB1   <------       ------->TEIL                --------->TCP15(1)  ---------->DOF2     <---------ANAC55(2)<------ ----RAV1(1)      <XXXXXXXXXXXXXXXXXXXXMIR4227 <---------ANAC58<---------AtLEC2   <---------ZAT14  <-   ggagtcatggatccgaatagaattgttgatactagtgggaccagtccttccttgagaaaaaggatgcatgaaccatctcgtgattgtagtgctattatgt  9410200      --------->At5g28300    --------->ANAC58    --------->ANAC46    --------->ANAC58    --------->ANAC55(1)     ------>MYB46(1)   <---------LBD16          ------>MYB83 <---------ZAT14           --------->ORA47(1) <---------REM1(2)        --------->DEAR3(1)                                                --------- --------->ZAT14         --------->MYB46(3)                                                <---------ANAC46 ------->REM1(2)         --------->DEAR3(2)                                           --------->ANAC58 ------->ZAT18         ------>MYB46(1)                                         <---------ARR14(2) --------ZAT14         ------>MYB83                                            --------->ARR14(2) ------->ZAT14         --------->MYB52(1)                        ------>MYB83  <---------ARR11(3) <-- ---ANAC46           <---------MYB59                             ------>MYB46(1)      --------->ANAC58 ---ANAC55(1)        ------->GAMYB                               -------->P    --------->ARR11(3) --- ---YAB1          --------->MYB52(1)                            ----------->RAV1(1)   --------->ANAC46 --------ZAT18 --------->ANAC46        <---------AHL20(2)     --------->MYB46(3)   --------->ZAT2<---   gtgtacacggcaaattgacacaaccgaaccgaccaagttatatatatgtcactaaaacagtctgaccaacaagagtttgaagacctgcaggctacgttta  9410300                                                     --------->YAB1                           <------                                                    <---------ATHB12                         --------                                      ------>ZmHOX2a(2)                                   <---------ANAC55(2)                                     <------ZmHOX2a(2)                               <---------ICU4           --------->YAB1           --------->ARR11(3)         --------->ANAC46      <---------AHL20(2) >TOE2(3) <---------YAB1            <---------ARR11(3)     <-----------GT1          --------->AHL20(2) -------ARR11(3)                    <---------ARR14(3)  <---------ICU4            --------->YAB1 ------>ARR11(3)              <----------DOF2       --------->AHL20(2)           <---------AHL20(2) ------CCA1(2)     --------->KAN4(2)--------->ARR14(3) --------->ICU4     ----------->GT1<-------TEIL   tatcttttgactattatagtatgttcccattactttgagatctcgtagtactcaataaatattacacggttttaagtcgataaataataaatacataaaa  9410400                                                                           <-----------GT1                                                                       <-------MYC2                                                                       <-------MYC3                                                                       <-------PIF4                                                                       ------->PIF4                                                                       ------->MYC4                                                                       ------->MYC2                                                                       <-------MYC4                                                                       ------->PIF5                                                                       <-------PIF5                                                                       ------->MYC3                                                                      --------->O2                                                                      <---------O2                                                                      --------->TGA1a                                                                      <---------TGA1a                                                                      <---------ANAC55(2)                                                                      --------->ANAC55(2)                                                                    <------------OsbHLH66                                                                  --------->ANAC58       <---------DOF5.7(2)                                        --------->ANAC58       --------->MYB52(1)                                         --------->ANAC46             ------     <---------MYB52(2)                               <----------DOF2------->TEIL              <-----    <---------At4g35610                       ---------->DOF2  <---------ARR14(2)  <---------ICU4    --------->STY1(2)                         ==================================bZIP_DOF       ------ ---AHL20(2)                                 --------->ANAC46  --------->ARR14(2) <---------YAB1 ->AHL20(2) <----------DOF2        ----------->GT1    ==========================bZIP_DOF ------------   ttctctagctaacgcttttagacaattcgaaaccgagtggaaactacacaaagcatcttttgacatatacgcacgtgttacttcatcatcgtccaatata  9410500                       --------->MYB46(3)                      -------->P                     ------->GAMYB                                       --------->AHL20(2)                    <---------MYB55(2)   --------->WOX13(1)              <---------AHL20(1) ----->TBP  --------->ZAT14*TSS       --------->ARR11(3)                 <---------AHL20(2) ----AHL20(2)       <---------MYB111(2)<------ZmHOX2a(2)      --------->YAB1 --->AHL20(2)  --------->ANAC46   ---------->DOF2            <---------ATHB12   <-----------GT1    <- >CBF<---------ICU4 --------->MYB46(3)<---------ARR11(3)   --------->WOX13(1) <---------AHL20(2)   <-   aatagactcattactaaactcaacaaccattaaaaccaaagatcaatctcttcttaatagtcaatcatatatcaaaaaatttaaactcttcttgatcaat  9410600                                                                                --------->ZAT14                                                                               --------->DEAR3(1)                                                                       --------->WOX13(1)                                                                    --------->TOE2(3)          --------->At4g35610                                      --------->YAB1          <---------At4g35610                                      <---------ICU4         <-----------RAV1(1)                                      --------->ICU4<---------ZAT14       <---------At4g35610                                        <---------ATHB12    <<<<<<<<<TBF1                                  --------->MYB46(3)<---------YAB1 --------ANAC58                        --------->YAB1        --------->ANAC55(2)--------->LBD16 --------ANAC58                       ----------->HVH21      --------->YAB1  <---------At5g28300   ggcttcttcttctgctgctatgtctcttgaatccatctctatgacaactctcaacaatctctctcgtaatcatcaatctcaccgcagttctcttcttggt  9410700                                                                ------>ZmHOX2a(2)                  --------->TOE2(3)                            --------->CCA1(2)                  --------->TOE1(2)                            <------ZmHOX2a(2)                  --------->TOE2(2)                           --------->AGP1            --------->HSFB2a(2)                               <---------ARR11(3)            <---------HSFB2a(2)                               --------->ARR11(3)        <----------DOF2                                   --------->YAB1       ------>ZmHOX2a(2)                                 <---------ATHB12      ------->TEIL      <------ZmHOX2a(2)                        <-----------GT1<---------ARR14(2)     --------->AGP1                         --------->GLK1(1) --------->ARR14(2)        <---------MYB52(1)     <---------AGP1                         <---------GLK1(1) <---------ARR14(3)       --------->TOE2(3)     --------->ARR14(2)             ------->GAMYB        <------ZmHOX2a(2)    <---------GLK1(2)     <-----------ARR10           --------->MYB52(1)   --------->LBD16         --------->ARR14(2)     --------->ARR14(3)         ----------->HVH21  =============HOX2a_HOX2a   <---------ARR14(2)     <---------ARR14(3)        <---------MYB52(2)  ------>ZmHOX2a(1)          <---------ARR11(3)     --------->ARR11(3)       --------->At4g35610  ===================HOX2a_HOX2a--------->TOE2(3)     <---------ARR11(3)       <---------At4g35610  ====================HOX2a_HOX2a    --------->ANAC46     <---------ARR14(2)<---------GLK1(2)   <---------GLK1(2)  --------->ARR14(3) --------->TOE1(3)<--   ttctcaagatctttccaaaaccttggaatctcatctaacggtccagatttctcctcccgatcaagatctactacttccaagaacctcaacgttactcgag  9410800                                                                         <----------DOF2                                                                       ---------->ID1                                                                  <----------DOF2                                                                  ------>ZmHOX2a(1)                                                                ------>ZmHOX2a(2)           --------->ALFIN1                                    <------ZmHOX2a(2)     --------->HSFC1(1)                                       <---------ARR14(2)                  ---     <---------HSFB2a(2)                                      <---------ARR11(3)<---------ZAT14 <----     --------->HSFB2a(2)                      ----------->GT1 <---------GLK1(2) --------->ZAT18<-----    <---------LBD16                      --------->ANAC58     --------->ARR11(3)--------->ZAT14<----- --------DOF2                            --------->ANAC58     --------->ARR14(2)<---------ZAT18<-----   ctttcttctggaattggggcaagaagaccgaaaactccagaccaagtaagtttaatagtttatagatccttttgtcttttagtacactgcgactaagtca  9410900                                                        --------->YAB1<---------At4g35610                          --------->CCA1(2)            <---------ATHB12 ------>ANAC46         <---------TOE1(2)      ---------->DOF2<----------DOF2 -----DOF5.7(2)        <---------TOE2(2)   --------->CCA1(2) ------>ZmHOX2a(1)  --------->YAB1     -- ----WRKY45  <---------RVE1(1)       <---------ATHB12--------->YAB1   --------->At4g35610          -- ----WRKY12 <---------MYB52(1)<----------ID1 <---------AHL20(2)    <---------MYB52(1)   <----------DOF2 ----WRKY38(1)        ------>ZmHOX2a(1)   <---------ARR11(3) <---------DAG2  --------->GLK1(1)     --   acgcctgttaatccgatatttttcctagatttgagacaaatcaagatttaaagactaataatcctttttgttagctcagaaatcaaaatgctttatttca  9411000  Previous    Next  AGI:  At3g25780.1    Description:  AOC3 (ALLENE OXIDE CYCLASE 3). Identical to Allene oxide cyclase 3, chloroplast precursor (AOC3) [Arabidopsis Thaliana] (GB:Q9LS01); similar to AOC4 (ALLENE OXIDE CYCLASE 4) [Arabidopsis thaliana] (TAIR:AT1G13280.1); similar to ERD12 protein [Brassica rapa] (GB:ABV89668.1); contains InterPro domain Allene oxide cyclase; (InterPro:IPR009410) Range:  from: 9410527    to: 9411804    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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