Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->GLK1(2)                                                                               --------->ARR14(2)  ----------->RAV1(2)                                                          <---------ARR14(2) --------->MYB52(1)          ------>ZmHOX2a(1)                               ----------->ARR10    <-- -------->P<---------AHL20(2)<----------DOF2                  --------->RAP2.3(3)            <------- ------>MYB83               --------->TOE2(3)    <---------YAB1     <---------ATHB12         <------- ------>MYB46(1)    --------->ZAT14             <-----------GT1>>>>>>>>>>>>>>>>>LFY         --------- ----->ZmHOX2a(1)   <---------ZAT14          ------->TEIL   --------->At4g35610<---------GLK1(2) ----   tcctacctgatataaaaatcagtgttctatcctttaagttgttcatgtattttcattccaagagcagccaatgttgagacagattctcttgctaagcttg  9407700                                                                                     --------->ANAC46                                                                                   <-----------GT1                                                                               <----------DOF2       --------->ARR14(2)                                                   --------->ARR11(3)      - -------DAG2                                              ----------->GT1   <---------AHL20(1)    --- --ANAC58  --------->At4g35610                       ---------->DOF2        <---------ARR11(3)   ---- --ANAC58  <---------At4g35610              <---------ANAC58                --------->AHL20(1)   <--- >ZAT2<---------MYB52(1)  --------->MYB52(2)<---------ANAC46               --------->CCA1(1)    <---- ------------->AG       <---------MYB52(1)  <---------ANAC58               --------->RVE1(1) --------   ccttatccgtttatgctgaaaacattgttagttaatccaagtattggcgtttcaaaaaagaagtgattttggtgcaaatatcttttcacagaatataaaa  9407800       <---------ATHB12     --------->ANAC46    <---------AHL20(2)      <---------LBD16                                    <---------YAB1 -------->ICU4             <---------LBD16                                  <---------AHL20(2) ------>AHL20(2)         ------->TEIL                                       --------->AHL20(2) ----->AHL20(2)          --------->ARR14(2)                                 <---------AHL20(1) ------AHL20(2)          <---------ARR14(2)        <---------ICU4       <---------AHL20(2) -----AHL20(1)     <-------TEIL      --------->AHL20(2)                <---------AHL20(2)       ----- ->AHL20(2)   <-----------GT1--------->LBD16      <-------TEIL   ----------->GT1                -----   taatttttaatcaattttacatacatgtatccgggacaaaaatatagttagattcattacatttagaaggttttttattttatttttgtagtttagggac  9407900                                                       --------->AtLEC2                                                --------->DEAR3(2)                                                <-----------------AGL1                                            <---------ANAC55(2)  --------->ARR14(2)     <----------DOF2   ---------->DOF2                       <------ZmHOX2a(2)      ------>MYB83------>ZmHOX2a(1) ---->ATERF1(1)                         --------->ARR11(3)      ------>MYB46(1) ---------->DOF2 ---->DEAR3(2)                   <---------ATHB12<---------ETT(1)<---------ARR14(2)     =============   cggccaaaagtatttcaacttaaatccaagacccaatgcttagatcacgttccgaccatggaaaccaaatccaaattcctcccaaagcatctttttagtt  9408000                         ------->MYC2                         ------->MYC4                         <-------PIF4                        <---------TGA1a                        --------->TGA1a           ----------->GT1       ===========================bZIP_DOF       <----------DOF2 ------------>OsbHLH66       <---------DAG2 <------------OsbHLH66                                                <---------CCA1(1)     ------>MYB46(1)--------->ANAC46                                                       <---------RVE1(1)     ------>MYB83   --------->ANAC58                                                      --------->ARR11(3)    <---------ALFIN1--------->ANAC58                                                      <---------ARR11(3)    --------------->AGL15------->PIF5                                        --------->AHL20(2)    <---------------AGL15<-------PIF5                                        ----------->TBP   ----------------->AGL2------->PIF4                                      <---------------AGL15   <-----------------AG------->TEIL                                        --------------->AGL15   <-----------------AGL1<-------MYC4    --------->YAB1                   ----------------->AGL3   <-----------------AGL2<-------MYC3    <---------ICU4                   ----------------->AGL2<----   <-----------------AGL3<-------MYC2   <---------ATHB12                  <-----------------AGL2<----   ========================================================================================MADS_MADS   =========================================================================================MADS_MADS   ----------------->AGL3------->MYC3 --------->WOX13(1)                  <-----------------AGL3<---- --------->PCF2   <-----------GT1   ------------>CBF         --------->MYB46(3)         ----------->ARR10 =================================bZIP_DOF         --------->YAB1         ===========================   tgagacccacttttggtaatttacgcacgtgctacttcatcaatcatccccattcatcactcatccaacatgtctatctataaatagacggagatatttc  9408100                        ----------->GT1                       --------->DAG2                      ---------->DOF2                 --------------->AGL15                 <---------ALFIN1          *TSS   ----------->RAV1(1)                           ------>MYB46(1)                     <-         <---------ATHB12   ---------->DOF2                    ------>MYB83                     ----- -----ANAC58     <---------------AGL15                        --------->WOX13(1)                <---- -----ANAC46    ----------------->AGL3                    <-----------GT1                       <---- -----ANAC58  --------->ANAC46       <---------CCA1(2)<----------DOF2      <-----------ARR10<-------- ================================MADS_MADS    --------->AHL20(2)<---------ATHB12        <----------DOF2   gtagaactcaaatcactcaccacataaagtaaaagtctcatctcttcataaaatagctttaaaccaatcaagtagagtttcttctcaagtctttttattt  9408200            <---------ANAC58     <---------YAB1 <---------AHL20(2) --------YAB1 ---->AHL20(2)                                                      --------->ANAC55(2) -----AHL20(1)      --------->At4g35610       --------->YAB1--------->GLK1(2) -----AHL20(2)      <---------At4g35610      ----------->HVH21 <----------DOF2             --------->ARR11(3) -AHL20(2)  <---------ANAC58       <---------ATHB12       --------->MYB46(3)               <---------ARR11(3)   tatttttatcaatggcttcttcagcagtgtctctccaatccatctctatgacaactctcaacaatctttcatgtaatcaacaatttcatcgaagctctct  9408300                                       ----------->HVH21                       --------->ARR14(3)                       --------->GLK1(2)                       --------->ARR11(3)          <---------GLK1(1)                       <---------ARR11(3)          --------->GLK1(1)                       <---------ARR14(3)     <-------TEIL                   --------->HSFB2a(2)<---------MYB52(2)                              ------->TEIL --                ------>ZmHOX2a(1)    --------->At4g35610                 <---------At5g28300       <-       ------>ZmHOX2a(1)             <---------At4g35610      --------->WOX13(1)     --------->ARR14(2)   --------->ARR14(2)  <-----------ARR10--------->MYB52(1)------>ZmHOX2a(1)          <---------ARR14(2)   tcttggttcctctaaatccttccaaaatcttggtatctcatctaacggttcagatttctcctatccatcaagtttcactgccaagaagaacctcactgct  9408400               --------->MYB52(1)            <---------------AGL15           ----------------->AG           --------------->AGL15           ----------------->AGL1          <-----------------AGL1                                                            <--------          ----------------->AGL2                         ------>ZmHOX2a(2)               <---------YAB1          <-----------------AG                      <---------WOX13(1)                --------->AHL20(1)   --------->ZAT2                                <---------AHL20(2)                  --------->AHL20(2)   <---------At4g35610                        ----------->GT1                     <---------AHL20(2) ------->HSFB2a(2)                        --------->ANAC58 <----------DOF2       <---------AHL20(2) --------HSFB2a(2)                        --------->ANAC58 ------>ZmHOX2a(1)     --------->AHL20(2)   tctcgagctctctcccaaaacgggaatatcgaaaaccctagaccaagtaagttaattgatccttttttgtcttccaaacttgattaaatatatgattaca  9408500                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                       --------->ANAC46                                                                    --------->ZAT18                                                          <---------ARR11(3)  --------->MYB52(1)                                                ---------->DOF2     <---------ZAT14                                             --------->ANAC46     --------------->AtSPL8                                             --------->AtLEC2     <---------------AtSPL3                                             --------->ANAC58     <---------------AtSPL8        ----- -YAB1                <-----------GT1        --------->ANAC58  <---------ANAC46              <-------   gagactcaaaatcaagaacacaattcacaaactgagtttgttttttcaggcaaagttcaagaactgagtgtgtacgaaatcaacgaattagatcgacaca  9408600  Previous    Next  AGI:  At3g25770.1    Description:  AOC2 (ALLENE OXIDE CYCLASE 2). Identical to Allene oxide cyclase 2, chloroplast precursor (AOC2) [Arabidopsis Thaliana] (GB:Q9LS02); similar to AOC1 (ALLENE OXIDE CYCLASE 1) [Arabidopsis thaliana] (TAIR:AT3G25760.1); similar to ERD12 protein [Brassica rapa] (GB:ABV89668.1); contains InterPro domain Allene oxide cyclase; (InterPro:IPR009410) Range:  from: 9408110    to: 9409192    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version