Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------YAB1                                                                  --------->ARR11(3)           ------>ZmHOX2a(1)                                                    --------->YAB1         --------->YAB1                                <---------ARR14(2)       --------->ANAC55(2)     <---------MYB52(1)                         <----------DOF2                <-------TEIL<---------ARR11(3)  <-------TEIL      --------->HSFB2a(2)    <----------DOF2         --------->ZAT14     ---------->DOF2 ------>ICU4        <---------HSFB2a(2)    <---------DAG2          <---------ZAT14    --------->AHL20(2) --->GT1<---------YAB1                    <---------GLK1(2)    <---------------AtSPL8 <---------AHL20(2)   aaaattcgttatcctaatagttttagaagaactaaatttctacagcttttctttgtgaattcgatttagtacagaataacatacataataaaagatttta  9404700                                                      <---------YAB1                   <---------AHL20(1)             --------->MYB52(1)                  <----------DOF2                       <---------AHL20(2)            ----------->HVH21                 <---------ARR11(3)                       --------->AHL20(2)      --------->YAB1                          --------->ARR11(3)                    <---------AHL20(1)      <---------ICU4           --------->At4g35610 --------->AHL20(2)               --------->AHL20(1)    --------->ARR11(3)         <---------At4g35610 <---------AHL20(2)     --------->At4g35610   <---- --------->AHL20(2)         <-------TEIL     --------->YAB1     <-------TEIL        --------->AHL20(2)   aaaaaaaatcatgtctaacagagaggcatgttcatctaacaaaactattatcttttattatacacatacatatataagatgccaaatattttattttcat  9404800                                                                                 <-----------GT1                                                                             <-------MYC3                             <---------PCF2                                  ------->MYC3                            <----------ID1                                   ------->MYC2                          <---------------AtSPL8                             <-------MYC2                          --------->ALFIN1                                  --------->ANAC58                        <-----------RAV1(1)                                 --------->ANAC58                     <---------AHL20(2)                                    <---------TOE2(2)                  <---------AHL20(2)                      ---------->DOF2  <---------TOE1(2)                 --------->AHL20(2)              --------->MYB52(1)       <---------ALFIN1 <--------- -----At4g35610  <---------AHL20(2)           --------->YAB1         --------->ANAC46   <-----------GT1   ctaagagatgtctatctaattaaataatgtgggacaaatatgtagttagaataacgaattcaaagcttcacaagtcgcacgtttttcatttttctttctg  9404900                                                                                    --------->AtLEC2                                                                               ------>NtERF2                                                                               --------->ORA47(1)                                                                               <---------RAP2.6(3)                    <-------TEIL                                              <---------ANAC58                --------->DAG2        <---------ZAT2                          --------->DEAR3(1)-----               ---------->DOF2        --------->ZAT2                          <---------ANAC58 ------        --------->DEAR3(2)           --------->ANAC58                 --------->MYB46(3)       ====== -DOF2  --------->ATERF1(1)          --------->ANAC58 --------------->AtSPL8 ----------------->AGL1 -   tagtttagggaccggccaaaagtacatcaacttagacccaagctaagacccaaaaatttggaccattttctaacaacttgccgtccatggaaaccgaatc  9405000                       <---------------AGL15                       --------------->AGL15                      <-----------------AGL3                      ----------------->AGL3                <------MYB83                <------MYB46(1)                                                        --------->AHL20(2)                --------->MYB52(2)                                                     ----------->TBP                <---------MYB46(3)                                                    --------->AHL20(1)               <---------DEAR3(1)                                         <---------ICU4            --------->MYB52(2)    <---------CCA1(1)                       --------->YAB1        --------->ATHB12          <---------RVE1(1)                       -------->ATHB1       <---------YAB1 <-----------------AGL2                             <---------ATHB12 ---->YAB1  <---------MYB46(3)   <---------ARR11(3)                    --------->WOX13(1) ----------->AGL3 ----------->HVH21                                  ------------>CBF <---------AHL20(1) =======================================MADS_MADS               --------->ANAC46 ------------>CBF -------->YAB1<---------MYB52(1) --------->ARR11(3)  <-----------GT1 <---------ATHB12 <---------ARR11(3)   aaaaatagcatcattcgttggtgacccatttttgggatatttagcattatcccattcaccatttatcagccatcaatcattcatccaatatatatacaca  9405100                    *TSS                   <---------ATHB12                             --------->ATHB12      <---------ANAC58                                          <---------ICU4      <---------ANAC46                ---------->DOF2           --------->YAB1                 <-----      <---------ANAC55(2)  ----------->RAV1(1)                 --------->ICU4                  <-----      ----------->GT1      <---------ALFIN1                    <---------ATHB12             <--------      <---------ANAC58  --------->ANAC46       <---------CCA1(2)<--------HAHB4          <----------DOF2   tagacatttcgtaaaactcaaatcactcaccacataaaaccaaagtcccatctcttaaaaaactaatcatttcaaagttttgtctctagtctttcttttt  9405200 ----YAB1<---------ANAC58 ----AHL20(2)   --------->HSFB2a(2)       ----------->HVH21         ----------->GT1     --------->ARR11(3) --DOF2  <---------ANAC58       <---------ATHB12       --------->MYB46(3)               <---------ARR11(3)   attgagcaatggcttcttctacaatctctctccaatctatctccatgacaactctcaacaatctctcatatagtaaacaatttcatcgaagctctcttct  9405300                                                    ------>ZmHOX2a(1)                                                --------->ARR14(2)                                                <---------ARR14(2)     --------->ANAC46                                            <-----------RAV1(2)        --------->ANAC58                                          --------->WRKY18(1)      <-----------HVH21                                        ------->GAMYB       ------>NtERF2                                     --------->MYB52(1)    <---------ETT(1)                                    ----------->HVH21      ----------->HVH21                                  <---------At4g35610      --------->ANAC46                         -                --------->HSFB2a(2)<---------MYB52(2)  ------>ZmHOX2a(1)                            <             ------>ZmHOX2a(1)    --------->At4g35610 <---------ALFIN1 --------->ANAC58      ------>ZmHOX2a(1)   tggtttctctaaatccttccaaaattttggtatctcatctaacggtccaggttcctcctctccgacaagtttcacgcccaagaagaaactcactcctact  9405400                                                                  <----------DOF2                                                                 ------>ZmHOX2a(2)                             ---------->DOF2                   <---------ARR11(3)            --------->ARR11(3)                        <-----------GT1---------->ID1 -------->ZAT2 --------->TOE1(2)          --------->ANAC58     --------->ARR11(3)----------->GT1 ---------At4g35610     --------->MYB52(1)--------->ANAC58 --------------------->WRI1    --------->YAB1   cgagctctctctcagaacttgggaaataccgaaaaccccagaccaagtaagtttattttcttcttgatcttttcgcttaagtttcgaaaaatcatataaa  9405500                                                            <---------AHL20(2)                                                            --------->AHL20(2)                          <---------DAG2               <---------YAB1              --------->AHL20(2)                      <---------ARR11(3)                     --------   <---------DAG2         <----------DOF2             --------->ARR11(3)                     <-------   <----------DOF2 --------->AHL20(2)                --------->YAB1      --------->DAG2      --------   cagagctttttccaaaaaaaatgaaatacttttttttttttttgctaaactgcaaatatcatataaatgaagggaaaggtttacatgagttagaacctaa  9405600  Previous    Next  AGI:  At3g25760.1    Description:  AOC1 (ALLENE OXIDE CYCLASE 1). Identical to Allene oxide cyclase 1, chloroplast precursor (AOC1) [Arabidopsis Thaliana] (GB:Q9LS03;GB:Q94IH9); similar to AOC2 (ALLENE OXIDE CYCLASE 2) [Arabidopsis thaliana] (TAIR:AT3G25770.1); similar to ERD12 protein [Brassica rapa] (GB:ABV89668.1); contains InterPro domain Allene oxide cyclase; (InterPro:IPR009410) Range:  from: 9405120    to: 9406487    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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