Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <------MYB83    ----------->GT1    <------MYB46(1)                                                                              ----   <---------AtMYB61      <---------MYB52(1)                                       <---------AHL20(1)  <---------WOX13(1)    --------->LBD16      <---------TOE2(3)   <---------AHL20(2)--------->AHL20(2) --->MYB52(2)         <---------LBD16    <----------DOF2   ----------->GT1         <---------AHL20(2) ----MYB46(3) ----------->GT1      <---------GLK1(1)   <-------TEIL          ----------->GT1<XXXXXXXX   ttggattggtttaatctggttaactccggttaactagatttcggtttaagtttaatgtgcatagtatataaacttgagaatgtaattaattcagtttaaa  9389200                                        <---------ARR11(3)                                        --------->ARR11(3)                                       <---------CCA1(2)                                    <---------MYB52(1)                                  <---------YAB1                                   <-------GAMYB                                  --------->ICU4                                  --------->MYB52(2)                              --------->AHL20(2)                                 <-------TEIL                            <------ZmHOX2a(2)       <-----------GT1       --------->DAG2              xxxxxxxxxxxxxxxx>smallRNA(i) --------->YAB1  <----------DOF2           ---------->DOF2             xxxxxxxxxxxxxxxx>smallRNA(s) <---------YAB1 ------>DOF2    <---------AHL20(2)----------->GT1  <<<<<<<<<TBF1         <---------ATHB12     <xxxxxx XXXXXXXXXXXXMIR396A  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i)<---------TOE2(3)   aaagctttgtaacaacattttatcagataataaagttcgttatatctctcttcttcttctccgattagacttccgatcatcggatttattatggtatcag  9389300                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                    <---------At4g35610                         <----------DOF2                                    --------->At4g35610           <-----------GT1            --------                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>ZmHOX2a(2)                                  <------NtERF2          --------------------->WRI1   <----------DOF2                             <---------ANAC58           --------->ATHB12      <------ZmHOX2a(2)          <---------GLK1(2)  <---------ANAC58          <-------TEIL          --------->ARR11(3) xxxxxxxxxxxxxxxxxsmallRNA(si3) <---------DEAR3(1)  --------->At4g35610      <---------ARR11(3)     x   agccatacaatcgattctcccgcttactctttcgtcggagatgagcttgttcttagcttcattgtgtttttcgatttgcgatctttcactttgaagattt  9389400                              <----------DOF2                       --------->ARR14(2)                       --------->GLK1(2)                       <---------ARR14(2)         <----------DOF2--------->HSFB2a(1)        --------->MYB52(2)   <---------ANAC58      <---------MYB52(1)<---------HSFB2a(1)     --------------------->WRI1    <---------ANAC58  <---------GLK1(2)    <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -->CCA1(2)          <------NtERF2 ->ARR14(2)         --------->LBD16      <------------------------ANAC81 --ARR11(3)        --------->LBD16   <---------MYB52(1)                      --------->REM1(2) --ARR14(2)       <---------LBD16  <---------ANAC58                       ------>ZmHOX2a(1)     <---- ->ARR11(1) <---------MYB46(3)<---------DAG2                       <-----------GT1   --------->GLK1(2) ->ARR11(3)<---------TOE1(2) <---------ANAC58  <----------DOF2  <---------ICU4   <---------TOE2(3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC58   <-----------GT1   ----------->RAV1(2) <--------   gcaatttcgttctttggttcgccggaatcttgcttttccgttctgttttctttttatttctcttcattttgacctcctgtgttgacgattctagctttct  9389500                               <---------ANAC58                               <---------ANAC58                             --------->ARR11(3) ------DOF2                  <---------AHL20(2)   *TSS            ------>ZmHOX2a(1)      --------->AtMYB61 --DOF2<-------TEIL  <----------DOF2     --------->ZAT6     <---------YAB1      ----------->HVH21 <--   ttacacaaattcatcacacatttctttgtaatttcttgttcttacactgagaatgggatattatgctcctccatcgattccagtgactcgacctccgatt  9389600                                                                               ======================                                                                               <------ZmHOX2a(1)                                                                       ===============HOX2a_HOX2a                                                                       <------ZmHOX2a(2)                                                                  <---------ZAT14                                                  --------->LBD16 --------->ZAT14                                                 <---------ANAC55(2) <---------At4g35610                                              --------->GLK1(2)   --------->ZAT18                                          --------->YAB1          <---------ZAT18                                         <---------YAB1    <---------YAB1 --------->ANAC46                                   <------ZmHOX2a(2)   <-----------GT1--------->ARR11(3)          <--                 -------->P       --------->ARR14(2)   --------->ARR11(3) --------->ANAC58       ----     <---------------AtSPL3  --------->MYB52(1)  --------->ANAC55(2) --------->At4g35610        ----- -------ANAC46 --------->MYB46(3) <---------ARR14(2)   <---------ARR11(3) --------->ANAC58  <--------   tcgtcgaatggtactgaacaacctcgttttcaaacggatcagtatgataatccgtattatcttcatagtgcagatcacgcaggacttgttcttgtgtcag  9389700       <---------ARR11(3)         <------NtERF2       --------->ARR11(3)       <---------ANAC58    <-----------GT1             <---------ANAC46 ====HOX2a_HOX2a                <---------ANAC58 ----ZmHOX2a(2)          <-----------HVH21                                                 --------->ATHB12 ----->AGP1        <---------RVE1(1)                         <-------TEIL             ------->GAMYB ---->At4g35610   --------->ARR11(3)  <------ZmHOX2a(2)    --------->KAN4(2)       --------->MYB52(1) ---HVH21         <---------GLK1(2)  <---------ARR14(2)   <---------KAN4(1)   <-------TEIL<---------YAB1   atcgattaacatcttcttcagattttttgtcatggcgtcgatccattctaatggcattgaatgttcgtaacaagttgggattcatcaacggtatgatttc  9389800                                  --------->WRKY18(1)                                <------MYB46(1)                                <------MYB83                             <---------ANAC58                             <---------ANAC58                     --------->GLK1(2)                    <---------GLK1(2)           --------->CCA1(2)                           <--------                    <---------ARR11(3)        --------->YAB1                  ----------->GT1                    --------->ARR11(3) <---------ARR11(3)              <---------GLK1(1)   <------MYB46(1)             --------->YAB1 <---------ZAT2   <---------YAB1      <---------MYB46(3)    --------->ATHB12            <---------YAB1  --------->ZAT2   --------->ICU4     <--------P <---------ANAC46<------MYB83   taaacctccaattgatcatagagattttggagcttggtcaagatgtaatgatatggtctcgacatggttgatgaattctgtggataaaaagattggtcag  9389900                                                                        <---------TOE2(2)                  <---------ZAT14                                       <---------TOE1(2)        --------->YAB1               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <------ZmHOX2a(1)    <----------DOF2                 --------->ATHB51                   ------>ZmHOX2a(1)   <---------ANAC58                 <---------AHL20(2)                 --------->HSFB2a(2)   <---------ANAC58        <---------ARR14(2)                         --------->TOE1(2) ---HVH21         --------->ZAT14  --------->ICU4           <------ZmHOX2a(1)               ---------   agtttgcttttcataacaactacagagggaatttggaataatttgctctcaaggtttaaacaggatgatgctcctaggatttttgatattgaacaaaagc  9390000                                                                                                -----                                                                                                <----                                                                                                -----                                                                                             <xxxxxxx                                                                                             <-------                                                                                      ------>ZmHOX2a(2)                                                                                    --------->ARR11(3)                                                                                    <-----------ARR10                                                                                    <---------AGP1---                                                                                    <---------ARR14(2)                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)   --------->ANAC58                           <----------DOF2                      <---------CCA1(2)   --------->ANAC58                    --------->ZAT14 <---------DAG2          <---------ANAC46 <---- ->DOF2                 ------->TEIL   <---------ZAT14 <----------DOF2    --------->YAB1   ------>ZmHOX2a(1)   ttagtaagctagagcaaggtgctatggatgtttgcacatactatacagctttacttactttatgggaagaatacaagaattatgtggatcttcctgtgtg  9390100  Previous    Next  AGI:  At3g25725.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.3e-213 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 9389550    to: 9394303    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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