Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  <--                                                                                        ---------->DOF2                                                                                     <------ZmHOX2a(2)            --------->ARR11(3)                                                      <---------ARR11(3)           <---------At4g35610                                                      --------->ARR14(2)           xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                        <-----------ARR10      <---------TGA1a                                                               <---------ARR14(2)      ===================================bZIP_DOF                                   <---------AGP1---      <---------ANAC58                                                             <------NtERF2 ----      <---------ANAC46                                                             <---------CCA1(2)<      <---------ANAC58                                                             <---------ARR14(1)      <---------O2                                                               <---------ANAC58----  <------NtERF2                                    <---------MYB46(3)            <---------ANAC46<--- <------NtERF2                                    <---------TOE1(2)              <---------ANAC58---- --------->LBD16              <----------DOF2   <----------DOF2      <---------GLK1(2)------>ZmHOX2a(2) --------LBD16        <---------YAB1 <----------DOF2       --------->HSFB2a(1)  <---------LBD16  <---   ggccggagtcgtgagatgttgtttccgattgtcttttctcttttttttttctttggttcgagccttctctagcttctcttatggcggatctaaagacgag  9381100                                                       <---------MYB46(3)                                                 ------>ZmHOX2a(2)                                 --                                                <------ZmHOX2a(2)                                 <--                                                --------->CCA1(2)                                 ---                                               --------->ARR11(3)                                <---                                               <---------ARR11(3)                                ----      <-------GAMYB                            <---------ARR14(2)                                ----     <---------MYB46(3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxx ---->ZmHOX2a(2)                           --------->bZIP60(1)                               -------- ----ZmHOX2a(2)                         ----------->TGA1                                  ----------- ------>CCA1(2)                 <---------MYB52(1)<---------HSFB2a(2)             <---------MYB52(1)< ----->ARR11(3)               <---------ANAC58 --------->ARR14(2)               <---------ANAC58 ---- ---------HSFB2a(2)           <---------ANAC58 --------->AGP1                   <---------ANAC58 <--- ----->AGP1                <-----------GT1 <---------bZIP60(1)               <-----------GT1 <------- ------ARR11(3)         <---------MYB46(3)----------->STF1                <---------MYB46(3)--------- ----->ARR14(2)        <--------P       ----------->HVH21                <--------P       ----------- ------ARR14(2)       <-------GAMYB    <-----------HVH21<-------GAMYB   <-------GAMYB    <-----------HVH21   atctagatggttgtgcttcgatagggttgtttccgtttctcggtgacgagatctagatggttgtgcttcgatagggttgtttccgtttctcggtgacgag  9381200     <---------MYB46(3) ---->ZmHOX2a(2) ----ZmHOX2a(2) ------>CCA1(2) ------ARR14(2) ----->ARR11(3)                                                                    <---------ANAC46 ----->AGP1                                                                        <---------bZIP60(2) xxxxxxxxxxxxxxxx>smallRNA(se3)                                                    <---------ANAC58 ->bZIP60(1)                                                 --------->ARR11(3)    ----------->RAV1(2) >TGA1<-------GAMYB                                          <---------ARR11(3)    <---------ANAC58 ---------HSFB2a(2)                                      --------->YAB1          --------->ZAT18 ----->ARR14(2)                                          <--------HAHB4       <-----------RAV1(1) ------ARR11(3)       ------->TEIL                      <---------YAB1        =================RAV --bZIP60(1)         <---------GLK1(2)            <---------ANAC46  <---------At4g35610           <-- -->STF1         <---------At4g35610           ------>ZmHOX2a(1)    --------->At4g35610        <----- >HVH21          --------->At4g35610 ------>ZmHOX2a(1)<---------CCA1(2)  <----------DOF2      -------   atctagatggttgtgctcaagctgaatctcaaggttttcctccttgttcctagcctgtatcattatcttcatctgctttagtgtggcctggctcaagtgg  9381300                           <---------AtMYB61                         <------------CBF                                            <---------ANAC58                       --------->ZAT18                                            ---------->ID1                       --------->ZAT14                       <---------TOE1(3)   <-------GAMYB                    <---------ANAC46                         <---------TOE2(3)  <-----------RAV1(1)       <---------ANAC58<---------ZAT14                     ---------->DOF2      <---------MYB46(3)       <---------ANAC58<---------ZAT18                  <-----------TBP       <---------ANAC46 -----TEIL     --------->ICU4                     <---------At4g35610  <----------DOF2   <---------ANAC46 ----MYB46(3)  <---------YAB1                   <---------ZAT18     ------->TEIL--------->MYB52(2) -->ALFIN1   <XXXXXXXXXXXXXXXXXXXXMIR161.2      --------->ZAT18    <---------CCA1(2) <---------ANAC58   ttcatgtttccttggtcatgtttagtgcattggtcgtagacttctcttagtgagctatttttaaaggttgtatctttgttgtttgttgcttccctgtatt  9381400                                                                           <---------DAG2    <-------              <---------MYB52(1)                                           <----------DOF2   --------             <-------GAMYB         <----------DOF2 <-----------GT1        --------------->AGL15   ttagggctatgtctccgttgtttgagctatgtttctcctttgtttgggctatatcacccttgtttggactatgtctcctttttgggtttgtgactacgat  9381500                           --------->ARR14(2)                <---------ANAC58                        --------->AHL20(2)                 <---------AHL20(2)                <---------ANAC58      <---------AtLEC2  --------->AHL20(1)          --------->DAG2 <-      <---------MYB52(1)   <-----------GT1 ------->TEIL <---------AHL20(2)         ---------->DOF2 -- --YAB1         <---------ANAC46  <----------DOF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------ ->ANAC46 <---------YAB1   <---------ARR14(2)      --------->AHL20(2)  <----------ID1----------->GT1<   actatcccgtttttgatagcgggttttagtatccgtctttgtatgaacttgaatgaaataaaatgagactattgtgacaaaaaaaaaaagtatataaaaa  9381600                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>ZmHOX2a(2) --------ARR11(3)                     <-----------GT1 ------->ARR11(3)     <---------TOE2(2) --------->ANAC46                                           -- ---->DOF2 <XXXXXXXXXXXXXXXXXXXXXMIR833-3P                                                         -- ------ZmHOX2a(2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          ---------->DOF2   --   agatcgcgagtttgtttgtttgcataggttaatgagcttattacgacattagaaagaatagtagtttttttttttgtcaaacagaaagaatagtagttta  9381700       --------->ZAT6                                  --------->LBD16     <-----------GT1                                  --------->ANAC46  --------->YAB1                                     <---------LBD16                                < ------->ANAC46                                     <---------ANAC58                           <----- ------->YAB1        <---------AGP1                 <---------ANAC46           --------->ZAT6  <----- ------->ANAC55(2) ------->TEIL                     <---------ANAC58     ----------->GT1      <------   tacataataacactatatatgtagctctgtaacatagattagtctggttttgtttcgcgcgatattgtagtagaattgtaaacactacgttttgggtctg  9381800                                        ------->GAMYB                                    <---------WRKY45                                    <---------WRKY12                                    --------->ETT(2)                                    <---------WRKY38(1)                                   --------->WRKY18(1)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                --------->ALFIN1                              <---------O2                              --------->O2                              <---------ANAC58                              <---------ANAC46                              <---------ANAC58                             <------NtERF2                        <---------TOE2(3)                                        <---------MYB46(3)           --------->YAB1 <-----------HVH21                                    <---------MYB52(1)     --------->YAB1     <---------AtMYB61                                     <---------At4g35610 ------NtERF2           <---------TOE1(3)    --------->At4g35610              <---------ZAT2 ----AtMYB61     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->At4g35610 <-----------RAV1(2) ----MYB46(3)    xxxxxxxxxxxxxxxx>smallRNA(s)<---------At4g35610       <------MYB46(1) -----RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ---------->DOF2   <------MYB83   gtggcattgaaaatcacaacaaggctaaggtcgcgtggtcaacagtctgcttaccaaaagctgagggagggctaggtctcaggtggttttcagaatggaa  9381900                                             --------->ARR11(3)                                             --------->ARR14(2)                                             <---------ARR14(3)                                             --------->GLK1(2)                              --------->KAN4(2)                            <---------MYB52(1)                            --------->ARR14(2)  <----------DOF2                            <---------ARR14(2) ------>ZmHOX2a(2)                           --------->At5g28300<------ZmHOX2a(2)                           <-------GAMYB     <---------ARR11(3)                          ----------->GT1    <---------ARR14(2)                          <---------MYB46(3) <-----------ARR10                         <---------RAP2.6(2) --------->ARR14(3)                         <---------DEAR3(1) <------ZmHOX2a(1)                         <---------ANAC46=============HOX2a_HOX2a                   --------->ATHB12      <------ZmHOX2a(1)               <-----------GT1                <---------ANAC58     --------->LBD16        <---------WOX13(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->ARR14(2)         <---------ARR11(3)   ------->GAMYB<---------ANAC58   <---------LBD16         <---------ARR14(2)         --------->ARR11(3)   tacaaccctcaatctgaagcttgtttggcggttattctccggaggaggatctttatgggtggattggcataggtatcaccatcttcagggtcttggggat  9382000  Previous    Next  AGI:  At3g25719.1    Description:  unknown protein Range:  from: 9381153    to: 9381305    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g25720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10613.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706) Range:  from: 9381471    to: 9382642    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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