Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------ANAC58                                                                 <---------ANAC58                                                          ---------->ID1                                                         <------MYB46(1)                           --          <---------MYB52(1)                        <---------AHL20(2)                            <--      ---------->ID1                               <---------AHL20(2)                    <----------DOF2     <-----------GT1                               --------->AHL20(2)                  --------->At4g35610 -CCA1(2)<----------DOF2              --------->AHL20(2) <------MYB83                  <---------At4g35610   actggtttttcctttagtccaaaattcaacgtagaaccaaaaaaatgggcttattaatttggtgttttcttgagtcttattacttagacagctttagaca  9373300                                                                              --------->ARR14(2)                                                                              --------->MYB52(1)                                                                              <---------ARR14(2)                                                                      ----------->GT1          <-----                                                                 <---------AHL20(2)        --------->YAB1                             <---------AHL20(2)                  --------->AHL20(2)       --------->AHL20(2)                  ------->GAMYB          <------ZmHOX2a(1)     <---------------AGL15      <---------AHL20(2)          --------->LBD16   --------->AHL20(2)                <---------AHL20(1)         --------->AHL20(2)        <---------LBD16     <---------AHL20(2)                --------->AHL20(1)      --------->ICU4 ------->GLK1(2) --------->MYB46(3)     ----------->GT1      --------->AHL20(2)--------->RAP2.6(3) -------GLK1(2)----------->RAV1(1)     <---------TOE2(3)   --------->AHL20(2)--------->RVE1(1)<------   aattctgtattccggtccaacagtcggaaatttaatccactgaggaaaaaatttcaacaaaaaatatataaatggtaaaatatcggcaatatttaataat  9373400                                                                                          <---------MYB59                                                                                          ===========                                                                                          <----------                                                                      ---------->DOF2     -----------                                                               <---------ANAC55(1)   --------->HSFB2a(2)           ---------->DOF2         ---------->DOF2<---------YAB1 ----------->GT1     <---------HSFC1(1)    <------ZmHOX2a(1)   <----------ID1        <----------DOF2<-----------GT1         <---------HSFB2a(2) ----TOE2(3)        --------->AHL20(2)  ---------->DOF2   <---------ICU4             --------->HSFC1(1) ---ICU4 <---------YAB1------------------------>ANAC81  <---------TOE2(3)<----------ID1  --------->ANAC46   gtaacaggaatatgaaagaaaaaaaaatgacaaaaaataaagaaaagactttacaattaagaattacgagttaaaaggccaagttttctagacccaattt  9373500                                                    --------->bZIP60(1)                                                 <---------YAB1                                            <------MYB46(1)                                            <---------ANAC58                                            <------MYB83                                            <---------ANAC58                                           --------->MYB55(2)                                           --------->MYB111(2)                                           <---------MYB46(3)                                           <---------DEAR3(1)                                    ----          <-------TEIL                    --------->ALFIN1                                 ----------         --------->CCA1(2)                <--------P<---------bZIP60(1)                  ---------->DOF2         --------->ARR14(1)               <---------MYB55(1)                            <---------ATHB12         --------->GLK1(2)               <---------MYB52(1)                         --------------->AGL15        --------->ARR11(1)             <---------DREB2C(2)                          <---------------AGL15 ===================================================================================================MADS_MADS -------AGL2                           <---------DEAR3(1) <---------ICU4           ----------------->AGL1 ------>AGL3         <----------DOF2  <---------LBD16 <---------YAB1              ------>NtERF2------   tggcccaagagattcgatatgtgcttttgaagagtgtatagccggtgggtgatgatatcattttgacccatgggctgatgttgaggcccaataaagaaaa  9373600                                                                      --------->At4g35610                                                                      <---------At4g35610                                                                     <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxsmallRNA(se3)                                                                     <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                  <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 ----------->RAV1(2)   <------------CBF                                                                 ------>MYB46(1)     <---------YAB1                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                 ------>MYB83       *TSS   <---------YAB1                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                --------->MYB52(1)--------->GLK1(2)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               ------->GAMYB      <---------ARR14(2)                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              <-----------HVH21                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            --------->TOE2(2)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->TOE1(2)                 --------->MYB46(3)  --------->ARR14(2)                           ----------->RAV1(2)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---------ARR14(2)----------->HVH21             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------ANAC46------->TEIL                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          ----------------->AGL1                           <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ICU4 <xxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------AHL20(2)  ------>ZmHOX2a(2)           --------->ANAC46<xxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s) ->GT1    <-----------------AGL1                   --------->ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(si3) --->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->WOX13(1)   aatataaaaatggcctatacagggatcgaacctgtgaccttcgcgttattagcacgacgctctaaccaactgagctaataggccaatctgattgtaattc  9373700                                                                                     <---------ICU4                                                                                <---------TOE2(3)                                                                             <---------WOX13(1)      --------->ARR11(3)                                                    <------------CBF    <----      <---------ARR11(3)                                        --------->ARR11(3)  <---------ATHB51     <<<<<<<<<RAP2.2                    ------->TEIL            <---------ARR11(3)  <---------YAB1  -   tcgttttagatattaatagatgtaatatagacatagtatatgaacttgtgaggtttagaaatataagataatcaaacagattgacgataattgtcttata  9373800                                                            <---------AHL20(2)                                                           --------->AHL20(2)              --------->ANAC58                           <---------AHL20(2)                   <------          --------->ANAC55(2)                           --------->AHL20(2)           <-------MYC3          <---------ANAC55(2)                     --------->ARR11(3)                 ------->MYC3  ----------->HVH21                               <---------ARR11(3)            --------->ARR11(3) -------GT1   --------->ANAC58                   <---------CCA1(2)           --------->AHL20(2) -------->At4g35610     <----------DOF2----------->GT1  --------->YAB1       <---------AHL20(2)   acagttgacattaagtaagaaattttcttttgatgtctatagagtataaacatatctattatataatacgttgagaaaataaaatcatgtgctatgttac  9373900                                                                                                    <                                                                                           --------->ICU4                          <-------PIF5                                                    <---------TOE2(3)                          ------->PIF5                    --------->ANAC46               <---------ICU4                         ----------->RAV1(2)       <---------------AtSPL8                --------->YAB1                        ------->TEIL          --------->ALFIN1                          <---------ATHB12                    ------->TEIL      --------->ZAT18     --------->ANAC58              <---------ATHB51 -----GT1        <---------YAB1       <---------ZAT18     --------->ANAC58       --------->ZAT18 ----   agattagaagaacacaaatatgaatgcacctggagagaagtccaccaagtgttgaagtacaaggaagtgaacatacaagtatgtggaccaataatgttga  9374000                           --------->ARR11(3)                           <---------ARR11(3)                          --------->RVE1(1)                          --------->CCA1(1)                        <---------ICU4                        --------->AHL20(2)                        --------->YAB1                     <---------ICU4                    --------->ICU4      <---------ANAC58      <-----------GT1--------->YAB1     <---------AtLEC2         --------->AtLEC2 ----------DOF2     <---------YAB1      <---------ANAC58 --------->REM1(1) --->TEIL         --------->YAB1   <---------ICU4   --------->ZAT6               <----------DOF2    <   atcttttttaaacatatgtataataataatatctgaaacattgcatgagaccgaagactacatctacatgcagaccaaaaacactttagctagttggaat  9374100                                    --------->YAB1                                   ------->TEIL                                <---------YAB1                              <---------ICU4                                                       --                              --------->YAB1                                    --------->ANAC46 ----                             --------->ICU4                                   --------->AtLEC2   <---     --------->MYB52(2)    <---------ICU4    --------->LBD16            ----------->HVH21 --------->AHL20(1) ---------YAB1          --------->YAB1 <---------ICU4 ------->TEIL    <---------ANAC55(2) --------->ARR11(3)   ttgtgattagttggagacagacaccataagaattatgaacataattccgaacaatgaacttggtttataaacacatgaccatgcgaaacaaatatactgg  9374200  Previous    Next  AGI:  At3g25715.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 9373611    to: 9373684    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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