Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <- ------>PIF5                                      --------->PCF5                     ---------->DOF2< -------PIF5                             ---------->DOF2                       --------->AHL20(2)  -- ------ALFIN1                 <---------HSFB2a(2) --------->TCP16(1)     <-----------GT1        <---- -----At4g35610          --------->CCA1(2)        --------->PCF2     --------->AHL20(1)       ------- ->ZAT18                --------->ARR11(3)       <---------TCP16(2)  <---------AHL20(1)      <------- >ALFIN1<-------TEIL    <---------ARR11(3)     --------->ALFIN1----------->GT1 <---------AHL20(2)  <-   cacttgcagtttcatttgttttgttagatataccagaaaaaaaaaaagagtggtcccataaaaacctgtaatatataacattttaatcaaagaaaatgat  9370400                                                                                        <---------YAB1                                                                                  <-------TEIL                                                                                --------->At5g28300     <---------YAB1                                                           <---------------AtSPL8     <---------AHL20(2)                  <---------AHL20(1)                   --------------->AtSPL8  <---------AHL20(2)                     --------->AHL20(2)                   --------------->AtSPL3 --------ARR11(3)                        <---------AHL20(2)                  <---------TOE2(3) ---------RVE1(1)                    <---------AHL20(2)                     <---------DOF5.7(2)    <- ------->ARR11(3)        <---------MYB52(2)                                 --------->MYB52(1)     -- -----WOX13(1) ----------->GT1       --------->AHL20(2)                 <---------------AGL15      -- -->ATHB12    ----------->GT1    <---------AHL20(2)                     --------------->AGL15      <- --YAB1  --------->AHL20(2)   <----------DOF2                          ----------------->AGL3     --- --------GLK1(2)<------ZmHOX2a(1)--------->AHL20(2)           --------->TOE2(3)------->GAMYB      <--   agatttttttattaaacaggaaaaaccactaacttttaattaaaaaatttggaatacagcaatacatcaaaaatccattaacggtacattatagttgaaa  9370500                               --------->YAB1               <---------AHL20(1)           --------->ANAC55(2) <-----------GT1           <---------ANAC55(2) <---------ICU4     <---------TOE1(3)        --------->ICU4     <---------TOE2(3)        <---------ATHB12    <-----------RAV1(2)  --------->ANAC55(2)                              <---------MYB52(1) --------AHL20(1)        <---------ANAC58                                --------->TOE2(3) ------->AHL20(1)        <---------ANAC46                               --------->ANAC55(2) ------->AHL20(2)        <---------ANAC58                               --------->ANAC46 --------AHL20(2)        <---------ANAC55(2)                       <-------TEIL ------>AHL20(2) --------->AHL20(1)<---------ZAT14 <---------AHL20(2)  <---------TOE1(2) -------AHL20(2) <---------AHL20(1)--------->ZAT14--------->AHL20(2)   <---------TOE2(2)  <---------YAB1   ataaattcaggttacataatattttttgcgtaatcactatactattctgccattttatatggaactaagttcatacgttatttctcacaattctccttga  9370600                    <---------YAB1         ----------->GT1                         <---------AHL20(1)               <---------ANAC58           <---------TOE2(3)                        --------->AHL20(2)               <---------RAP2.6(2)      ---------->DOF2                            <---------AHL20(2)               <---------ANAC58    --------->At5g28300                             --------->AHL20(1)          <---------ICU4          --------->LBD16                      <---------AHL20(2)        <---------ARR11(3)        ----------->GT1                      --------->AHL20(2)        --------->ARR11(3)      <---------LBD16                  --------->YAB1   --------->AHL20(2)       --------->YAB1        <-----------GT1                  <----------DOF2     <---------AHL20(2)   tgtgatcaaagataatggcggtctgattgtataacccggtgaaaaaggttttttggaaagaattctttaatattaaaatatcaaataaattttgtttaaa  9370700                                  ------->MYC3                          ---------->ID1                  --------->ZAT6  <-------MYC3                     <----------DOF2           --------->AHL20(2)   <-------MYC3                      <---------DAG2    <------ZmHOX2a(1)           ------->MYC3                   <-----------GT1  <---------TOE2(3)    ----------->TBP                  *TSS  ----------->HVH21               <------   aattaaggacacattatatagcactatatatacacatgtgtatgcattatcaaatgggatgtttgtgaccttttgtctcttcttctctaaaattctcttt  9370800                                           ---------->DOF2                                         <---------ATHB12                                    --------->ANAC58                                    --------->ANAC58                                    --------->ANAC55(2)                                    --------->ANAC46                               <---------------AtSPL8 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------->TEIL                       <-----------GT1              <- ----DOF2                      <---------------AtSPL3            <---------ICU4         --------->YAB1   ctcccaaaaactaaaaaaccaaaaaaaccaaaaaatgtacgcaatgaaagaagaagactgtcttcaaacatttcacaacttacaagactatcaagaccag  9370900                                              <-----------GT1                                            <----------DOF2    --------->ANAC58                                           <---------ICU4      --------->ANAC46                                         <---------ARR11(3)    --------->ANAC58                                     <---------ETT(2)         ------>MYB46(1)                                     --------->ETT(2)         ------>MYB83             ----------->GT1                     <---------GLK1(2)<---------DDF1         <---------ALFIN1     ----------->HVH21         <---------ICU4             <------NtERF2           --------->MYB46(3)    --------->ANAC46         --------->YAB1           <---------DEAR3(1)      --------->PCF2       -------->P<---------MYB52(1)   XXXXXXXXXXXXXXXXXXXX>MIR414    <---------MYB46(3)     <-----------GT1      <-----------GT1      <- ------TEIL<---------YAB1   ----------->RAV1(2)      <----------DOF2        <---------MYB52(2) ------   tttcatcttcatcatcatccacaaattctcccctggtcgtcgacatctttaccttcttttgacccactccatttcccatctaacccgacccgttattctg  9371000                                                                                        =============                                                                                        =============HOX2a_HOX2a                                                                                        <------ZmHOX2a(2)                                                                               ------>ZmHOX2a(1)    <---------ZAT18                                                            ================HOX2a_HOX2a    --------->ZAT14                                                         ------>ZmHOX2a(1)       <    <-------TEIL             <<<<<<<<<TBF1                                  ===================HOX2a_HOX2a    <---------ZAT14   <---------ARR11(3)                                   <---------ALFIN1   ------>ZmHOX2a(1) --------->LBD16      --------->ARR11(3)                                 ======================HOX2a_HOX2a --------LBD16   ------->GAMYB             <----------DOF2               ------>ZmHOX2a(1)   -------- ----->HVH21  ----------->RAV1(1)  ------>ZmHOX2a(1)              ---------->ID1  <---------AtLEC2  -   acccggttcactacttcaacagaagagcttcttcttcctcttcttcttttgactataacgacggttttgtctctcctcctccttccatggatcatcctca  9371100                                                <---------ANAC58                                                <---------ANAC46                                           <---------ANAC46                                           <---------ANAC58                                           <---------ANAC58                                           <---------TGA1a                                           --------->O2                                           <---------O2                       --------->ARR11(3)  <---------bZIP60(2)           <---------ARR11(3)--------->ZAT18                       <---------ARR11(3)  =======================bZIP_DOF                 <---------ZAT18         <------ZmHOX2a(1)               <-----------HVH21 <---------ANAC58             <---------ANAC58       <---------TOE2(3)                <---------ANAC58   <---------ANAC58 --------->TOE1(2)       <---------TOE1(3)                <---------ANAC58<---------MYB52(1)<------ZmHOX2a(2)--------->ZAT14 ===============HOX2a_HOX2a   --------->PCF2    <---------ANAC58   <---------MYB46(3)   <---------ANAC58 ---------HSFC1(2) --------->LBD16 <---------ATHB12    ------>ZmHOX2a(1) --------->ARR11(3)<---------ZAT14 ->TOE2(3)   <---------AHL20(2) --------->MYB46(3)     <----------DOF2 ----------->ARR10<---------ANAC46 -------->HSFC1(2)--------->ANAC46<-----------HVH21    ==========================HOX2a_HOX2a   gaaccatctaaggattttatccgaagctcttggacccatcatgcgtcgtggctcgtcctttgggttcgatggtgagatcatgggaaaattgagtgcacaa  9371200                                                                                                -----                             ---------->DOF2                                                 <-------                          <----------DOF2                                                    <-------                        --------->At4g35610                                                  <-------                     --------->At4g35610     <---------At4g35610                            <-------TEIL                     <---------At4g35610     --------->At4g35610                         --------->At4g35610                 <----------DOF2             --------->ZAT2                              <---------At4g35610             <---------TOE2(3)               <---------ZAT2               --------->ZAT6 <---------ZAT2             <---------TOE1(3)      --------->YAB1                   --------->GLK1(2)   --------->ZAT2   gaagtcatggatgctaaggctttagctgcttcaaagagtcatagtgaagctgagagaagaagacgagagagaatcaacactcatcttgctaagctgcgta  9371300  Previous    Next  AGI:  At3g25710.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42085.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 9370756    to: 9372631    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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