Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                    <---------MYB46(3)                                             --                                    <------MYB83                                                   <-                                    <------MYB46(1)                                               <--                                  <--------P                                                    -----                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                           <----                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <-------TEIL           -----                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <-----------------AG   -----                      <---------AtMYB61                             <---------AHL20(2)          <----                      <---------TOE2(3)                       ----------->GT1                   -----                      --------->MYB59     <-------GAMYB   <---------ARR11(3)                   <-----          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->ARR11(3)                   ------ -------->ATHB12      <---------TOE1(3)  <-----------RAV1(1)------>ZmHOX2a(2)                  <----- --------YAB1   --------->DAG2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->AHL20(2) <------------- ----->TOE2(3)---------->DOF2  <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------------   cttgattgtatggaacaaaaggtttaggttgagcttgttggttctgttgaatgtaaacttgatcttgtatatatatacatattgggaaatttgtacaatt  9333300       --------->YAB1      <---------YAB1    --------->YAB1   <---------AHL20(2)   --------->AHL20(2) -------->AHL20(2) ---------AHL20(2) ------->AHL20(2) --------AHL20(2) -------YAB1 ---->ATHB51 ----HAHB4 --->ATHB1 ---->YAB1                           --------->ARR11(3)           <---------AHL20(2) -----ICU4        <-----------GT1    <---------GLK1(2)         <---------AHL20(2) ---->AHL20(2)    --------->ZAT6     <---------ARR11(3)       --------->AHL20(2) ----ATHB51     <-----------GT1    ----------->ARR10          <---------AHL20(2) --->ICU4    --------->YAB1    <---------ANAC55(2)       <---------DAG2 ----YAB1 --------->YAB1       --------->ANAC55(2)       <----------DOF2  --------->AHL20(2) --AtSPL8--------->ZAT6      --------->AHL20(2)       <-----------GT1     --------->YAB1          --- ->AtSPL8xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ----------->GT1--------->AHL20(2)     <<<<<<<<<<<<<<<   attaatttataatactaataacaccatacaattacataagattttcaaaaatgttattactttattaatttatcgattatatcaatttatacactggtcc  9333400                <---------AHL20(2)             --------->AHL20(2)             <---------AHL20(2)            --------->AHL20(2)          --------->AHL20(2)                                       <---            <---------AHL20(2)  --------->ZAT14                                                  <---        --------->AHL20(1)      <---------ZAT14                                         --------->ANAC58        <---------AHL20(2)    --------------->AtSPL8                             <---------------AGL15        --------->AHL20(2)<---------ANAC58                          <---------TOE2(3)   --------->ANAC58 ------->DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------AHL20(2)       --------------->AGL15 <<LFY  <---------AHL20(1)<---------ANAC58              --------->AHL20(2)<---------ANAC55(2)<-------   caaagaagaatttattaatttatagagggcttactgtacaaatttaaaacattcttgtttaatttggatttagattaagtaaactaaattaagcaatgac  9333500                                                --------->YAB1                                               <---------YAB1                                             <---------ICU4                                             --------->YAB1                                            <---------YAB1           --------->ANAC46                    <---------TOE1(3)       --------->ICU4         --------->ANAC58                    <---------TOE2(3)     --------->YAB1           --------->ANAC58       <---------ARR11(3) <------MYB46(1)<---------AHL20(2)        --------->ANAC46       --------->AHL20(1) <------MYB83   --------->AHL20(2)       --------->ZAT18       <---------AHL20(1)--------->MYB59 <---------ATHB51       --------->ZAT18       --------->ARR11(3)<---------AtMYB61<---------ICU4        <---------ZAT18 -------DOF2<---------AHL20(2)           --------->ICU4         --------->ZAT14 ------DAG2--------->AHL20(2)           --------->AHL20(2)      <---------ZAT14              <------- --ATHB12 <---------AHL20(2)            <---------AHL20(1) <---------YAB1                <---------AHL20(2)   tttttagaatattttaaatttttaggtttggtttagacacaaaataattatcagaaatactatgagtgcacacaaaacaaatactaggtattttagtgaa  9333600                                                               <-----------GT1                 <---------ANAC58                           <---------ARR14(2)     ------->TEIL<---------ANAC46                      --------->AtLEC2   <---------ZAT18                                   <---------ANAC58   --------->ZAT14                                   <---------ANAC58  <---------ANAC58              <-----------GT1------>ZmHOX2a(1) ---------->ID1  <---------ANAC58   <---------YAB1<---------ANAC58<-----------GT1               ------>ZmHOX2a(1) --------------->AtSPL8 <---------YAB1       --------->YAB1 --------->ARR14(2) --------->YAB1 --ZAT6          <---------ANAC58  <---------ANAC58<---------AHL20(2)<----------DOF2   aattgtgtacccctagttggcttgttattgttatataccttgctcaatcctatttacttgcaaatttgcccctttgctcaatcctatttctaagagtgtc  9333700                                         --------->ZAT18                                         ------------>CBF                                         <---------ZAT18             <--------ATHB1                                      <---------ANAC58               --------->ATHB12                                      <---------ANAC58              <---------YAB1                                 <----------DOF2                    <---------ATHB12                              <---------ARR11(3)          --------->ARR11(3)                              --------->ARR11(3)          <---------ARR11(3)                             <---------CCA1(2)          <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------ANAC58       --------->AHL20(2)   <------------CBF    --------->ICU4    <---------ANAC58     <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       -  <-----------GT1        --------->TOE1(3)     --------->ATHB12 ------------>CBF                -----  *TSS    <-------GAMYB  --------->TOE2(3)   <---------ATHB12  --------->ANAC46            ----------   attttttcttgctgttacagtttaaaactttaaatctttagggtgcaatcgattggcgaacatctacacaatgattcagagaaggaatgaggggaaagaa  9333800                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                   ----------->GT1   ----------->GT1                              <---------ANAC46                <----------DOF2  <--------P                                    <---------ANAC58          <-----------GT1 ---------->GT1                                 <---------ANAC58     <---------AHL20(2)    <--------- ----->DOF2                     --------------->AtSPL8           ------>ZmHOX2a(1) --------->YAB1 >DOF2           ---------->DOF2<---------------AtSPL8--------->CCA1(2)--------------->AtSPL8  <-----   aagggttgataaatagattaaaagttagatgttatttgtacttataagttgagtggatacaaaattcctattttttttacctctttcatatttcttttta  9333900                                                              --------->ANAC46                                                            ----------->RAV1(1)                                                           ----------->HVH21                                                           --------->ANAC46                                                           ------->GAMYB                                                           --------->At1g77200                                                           --------->DEAR3(1)             <---------At4g35610                                       --------->ANAC46    --------->DEAR4(1)       <---------YAB1                                      --------->MYB46(3)   --------->DREB2C(2)    <---------AHL20(2)                              --------->GLK1(2)           <---------MYB55(2)     <---------YAB1                --------->ARR14(2)  --------->ARR14(2)    --------->MYB46(3)    <---------AHL20(2)               <------ZmHOX2a(1)    <---------ARR14(2)    --------->DEAR3(2)<---------RVE1(1)       <  <----------DOF2            <---------ARR11(3)          ------>MYB46(1)    <---------CCA1(1)       -  <---------DAG2<---------ARR14(2) <---------CCA1(2)     -------->P        --------->ARR11(3)     <-- -DOF2  <---------AHL20(2)   --------->ARR11(3)          ------>MYB83      <---------ARR11(3)-------- ------GT1<-----------GT1  ----------->ARR10      <-----------GT1  <---------MYB52(2)     --------->At4g35610   ctgactttattttaacaggattcactgatgagattttgtatccaccatgtttttactccaaccgacacaactaatcagatatttttatttttagctaaag  9334000      ------->MYC3                                 <---------ANAC46      <-------MYC3                               <------MYB46(1) ---------ARR14(2)                               <------MYB83                     --------->YAB1 -------->ARR14(2)       <----------ID1         <---------AtMYB61                <---------ATHB12  -- -------KAN4(2)        ---------->DOF2      --------->ATHB12            <---------ICU4       ------>ZmHOX2a(1) -->DOF2       <---------ANAC46   ----------->GT1<---------ANAC46    --------->YAB1         ---------   aatatacacatgtagatgtgtgtatgaaagacaaaaatgtaaatgttgatttggtgtatgatatgtcttattcataagtcccaatgaagacagtccttaa  9334100                 <---------At4g35610                 <---------ZAT2                 --------->ZAT2               <---------RAP2.3(3)              <---------At4g35610              <------NtERF2              --------->ATERF1(1)             <---------MYB46(3)            <---------RAP2.6(2)          <---------MYB46(3)         <---------AtMYB61         --------->ALFIN1       <------MYB46(1)       <---------ANAC46       <------MYB83      <---------AtMYB61      --------->MYB111(2)      --------->MYB52(2)      --------->MYB59      --------->MYB46(2)      --------->MYB111(1)      --------->MYB55(2)     <---------MYB55(1)    <---------MYB52(1)   <-----------HVH21   <-------GAMYB --------->At4g35610<----------DOF2                   <-----------GT1 <---------TOE2(3)       ------>MYB83                   <----------DOF2 ---------->AtMYB77      ------>MYB46(1)         <---------CCA1(2)   --------->AHL20(2)  <---------ATHB12 >TOE2(3)<---------DEAR3(1) ------>ZmHOX2a(1) <-----------GT1   <-------TEIL  --------->ETT(2)    ---   tctacggttaggtggtggctgctcaccttcctctattccttttttttgtttctatcttctttcacatccatttaactatttcgacagaccaatagttcta  9334200  Previous    Next  AGI:  At3g25630.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 7.8e-20 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 9332893    to: 9333702    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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