Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 <---                                              --------->GLK1(1)                                  <---                                              <---------GLK1(1)                                  <---                                       --------->ANAC58                     <---------YAB1  ---------                                       --------->ANAC58                   --------->YAB1  --------->YAB1 ---MYB52(1)        --------->REM1(2)---------->DOF2                      ----------->GT1<---------ATHB12 ---DOF2       <---------At4g35610 --------->YAB1              ----------->GT1   ---------->DOF2 ---- -DAG2         ----------->RAV1(2) --------->AHL20(2)  <-----------------AGL1  <---------YAB1   <----   gtctccatttctcattcacctgtgaagaacagagcaataaaaagccagaactctgtttcagagtaaggcaaaacaattgttattaaagcaaatcaaaagg  9290200        <XXXXXXXXXXXXXXXXXXXXMIR774        <---------------AGL15        --------------->AGL15       <---------ANAC58       ----------------->AG       <-----------------AGL1       <-----------------AGL2       <---------ANAC46       <---------ANAC58       <-----------------AG --------MYB59 ---->ZmHOX2a(2) ----ZmHOX2a(2) ----->ARR14(2) ------ARR14(2)                                              <---------ANAC58 ------AGP1                                    <---------AHL20(2)       --------->TOE1(3) ------ARR11(3)                                --------->AHL20(2)       --------->TOE2(3)     ------- --------ARR10              <---------ETT(1)--------->AHL20(2)     --------->MYB46(3)        <-------TEIL ->DOF2----------------->AGL1         --------->TOE2(3)      <---------ANAC58           <------------ ----->ARR11(3)             <----------ID1  --------->YAB1 <-----------GT1            --------->DAG2 --ZmHOX2a(1)        --------->YAB1   --------->TOE1(3)    <---------AHL20(2)       ---------->DOF2   atctaacttgcttatatgggtaatcaaattccgacaaaaaccctaataaaaaattgagaatttacttgaacaaaccctaaaaacataaaaggcgattcat  9290300                                                   ------>MYB46(1)                                                   ------>MYB83                                                 <---------MYB59                                             ------->GAMYB<---------YAB1                                            <---------MYB52(2)                                            --------->MYB46(3)                                           <---------TOE2(3)                             <---------GLK1(2) ------->TEIL                      XXXXXXXXXXXXXXXXXXXX>MIR866-5P<---------ATHB12                     --------->ANAC58     <---------DOF5.7(2)                     --------->ANAC58     --------->MYB52(1)                                    -----                --------->ANAC46        --------->DOF5.7(2)                                     ----- -->ATHB12      --------->ANAC58      <---------TOE2(3)--------->GLK1(2)                      ------- ---------WRI1  --------->ANAC58 <----------DOF2--------->MYB46(3)          --------->ZAT18 ---------   tgaagaaagattacttacaagtcaagaaatggattcttttaagttaacgaaccaaacaatctgattaaaacccttgagagcccaaaacctgtaaacaaac  9290400                                                                                     <----------DOF2                                ---------->DOF2                                  <---------At5g28300 ---->ANAC58                  <---------YAB1              ---------->DOF2       <-----------GT1 ---->ANAC58                --------->YAB1         --------->ANAC58     --------->YAB1 -->MYB52(1)               --------->ICU4          --------->ANAC58  --------->WOX13(1) >MYB46(3)                <---------KAN4(2)        --------->ANAC46 --------->MYB46(3)   gcataagtatcgatcgaacacaagagagaatgatcaaagaacattttcaatacaagaaatcaaagaaacaacaatcagagatttaccctttattagattg  9290500               -------->HAHB4               <---------ICU4               --------->YAB1              <---------YAB1              --------->ICU4              <---------ATHB12         --------->ANAC58                                                 --------->ANAC46         --------->ANAC58  ---------->DOF2  <----------DOF2             <-----------GT1       ------- --------->ANAC46   <---------YAB1      <-----------GT1               --------->AHL20(2)      <------ --------->ANAC58 --------->YAB1       <---------AHL20(2)        --------->YAB1          <---------YAB1 --------->ANAC58<---------YAB1  ----------->GT1           --------->GLK1(2)--------->At4g35610<-----   aacacgaaaacaagaaatgattataaaaaaaaagatggaaatttatcttttgaagtttgagtttctatgaaaataaacagcacaaggggttttgattttt  9290600                <---------WOX13(1)               >>>>>>>>>GATA-3                                                               --------               >>>>>>>>>GATA-2             --------->ANAC55(2)                             <---------ANAC58    --------->At4g35610               <---------At4g35610                                  <---------ANAC58    <---------At4g35610--------->YAB1 --------->At4g35610              ------------>CBF    ---------- -->AHL20(2)   <------------CBF   --------->ANAC58             ----------->GT1             <---------ANAC46 -----TBP      >>>>>>>>>GATA-1    --------->ANAC58             <---------ANAC46    <-------TEIL  <--- ----YAB1      >>>>>>>>>GATA-4  ---------->DOF2            <------------CBF       --------->AtLEC2   atagtcagatgctagtggattgaaatcatagaagaaaagcatctcacttaatttgaaacaaaattgagtataaaacaatctaacatgcatgaggcgtgat  9290700                                                                                                    -                                                  <-----------RAV1(1)               --------->AHL20(2)                                               <---------ALFIN1                     <---------ARR11(3)                                        <---------ANAC58                            --------->AHL20(1)                                  <---------AHL20(2)                                <---------AHL20(2)                                 --------->AHL20(2)                                 --------->ARR11(3)  <-----------GT1    <---------DOF5.7(2)<---------ANAC58                    <-------GAMYB           - --->HVH21           --------->MYB52(1) <---------ANAC46--------->ETT(2)   ----------->GT1 ---------- ->GT1           --------->MYB59 <---------AHL20(2)  <---------MYB46(3)    <---------MYB46(3)    ---- ----TEIL<-----------GT1--------->TOE2(3)    ----------->RAV1(1)   --------->YAB1   <---------AHL20(1)   acatttacaattcacaagttagataacgtcaatgtttaaattgcttgcaacactgttgttgacagaaaatgaaaatgtggttagaatatattcaaaagaa  9290800                                                                     >>>>>>>>>>>>>>>>>LFY                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                               --------->YAB1                                                               <---------AHL20(2)                                                               --------->AHL20(2)     <---------ANAC58             --------->ARR14(2)                             <---------ICU4            <---------ANAC58  <----------DOF2                                          --------->ICU4             <---------ANAC46  <---------DAG2                         <---------MYB46(3)<---------ATHB51     <---------ARR11(3) ----->MYB46(1)                  <----------DOF2           --------->AHL20(2)   --------->ARR11(3) ----->MYB83 <---------ARR14(2)------>MYB83                <---------ATHB12     --------->ARR14(2) >DOF2    <---------------------WRI1   <---------MYB52(1)  <---------AHL20(2)   <---------ARR14(2) <- ----->MYB46(3)<-------TEIL    ------>MYB46(1)        --------->LBD16<<<<<<<<<<<<<<<<<LFY     -------   ccaactttttttgtggatacatccaaaaaaaccaactttcggtttgttcaaaattccacaaataattaaaatgccattggcatatattccttggacaaaa  9290900                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                    --------------->AGL15                                   ----------------->AGL1                          --------->TOE2(3)                           <------ZmHOX2a(1)   --------->ANAC58          <---------TOE2(3)<---------ICU4                      <---------GLK1(2)      --------->CCA1(2)        <---------YAB1<---------------AGL15                  <-----------------AGL1    <---------ARR14(2)     --------->ICU4  --------->TOE1(3)                 ----------->RAV1(1)        --------->ARR14(2)----------->GT1    <---------ARR11(3) ---------DOF2   ------->TEIL --------->AtMYB61--------->ANAC58    <---------YAB1--------->ARR11(3) --->DOF2    ------->TEIL--------->MYB59   <------ZmHOX2a(1) <---------TOE2(3)  <---------GLK1(1)   <   gctttttaaaacatgtatgcaccagattaggaccaatgccatataggatacgaaaacacattagaggttattattaatgtagaaatcttaaattagtaca  9291000                    --------->ANAC55(2)               <---------ICU4               -------->ATHB1               --------->YAB1               --------->ATHB51              --------->ICU4       <---------MYB46(3)                                                            <---------AHL20(2)      --------->ALFIN1                                                               <---------YAB1      <---------AtMYB61               ----------->GT1                  --------->ARR11(3) --------->ANAC55(2)    <---------ANAC46<---------ANAC55(2)                                <---------ARR11(3) <---------ANAC55(2)  --------->LBD16<---------YAB1     <---------LBD16        --------->ANAC58         --------->AHL20(2) ---------LBD16<--------HAHB4     <---------SPL7           --------->ANAC58     <-------TEIL   tatgcggagtggtggaattattatgtaatctcgcatcatacggataattcatactattagcaaacaacttcgatatctaatatacatataataggtattc  9291100  Previous    Next  AGI:  At3g25570.1    Description:  adenosylmethionine decarboxylase family protein. similar to SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT3G02470.3); similar to SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE), adenosylmethionine decarboxylase [Arabidopsis thaliana] (TAIR:AT3G02470.1); similar to S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] (GB:Q9M4D8); similar to S-adenosylmethionine decarboxylase [Medicago sativa subsp. falcata] (GB:ABO77440.1); contains InterPro domain S-adenosylmethionine decarboxylase, core; (InterPro:IPR016 Range:  from: 9288470    to: 9290575    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g25572.1    Description:  CPuORF11 (Conserved peptide upstream open reading frame 11). similar to CPuORF9 (Conserved peptide upstream open reading frame 9) [Arabidopsis thaliana] (TAIR:AT3G02468.1); similar to S-adenosylmethionine decarboxylase uORF [Daucus carota] (GB:AAR84407.1); similar to putative (GB:AAC48988.1); contains InterPro domain S-adenosyl-l-methionine decarboxylase leader peptide (InterPro:IPR012511) Range:  from: 9288500    to: 9290575    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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