Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                            ---------                                                                                           ------>MYB83                                                                                           ------>MYB46(1)                                                                                        --------->MYB46(3)                                                                                       -------->P   -                                                                                       ------>MYB83<-                                                                                       ------>MYB46(1)                                                                                      --------->MYB55(1)                                                                                     --------->AtMYB61                                                                                     --------->MYB46(3)                                                       --------->ANAC58              <---------MYB111(1)                           ------>ZmHOX2a(1)           --------->ANAC58              <---------MYB55(2)            <-----------GT1--------->LBD16  --------------->AGL15          <---------ZAT14--------->ANAC46      --------->GLK1(2)  <---------LBD16   ----------------->AGL1     <---------ZAT18<---------MYB111(2)    --------->MYB46(3)   ----------->RAV1(2)<---------------AGL15     --------->ZAT18<---------MYB46(2)   gaatcaacaatctattacctcttcttctcctgaacttcacttggtacctcttgaagtaagcattcgacttggtggacttcacaaacacctaccaacaaca  9272200                                                                       --------->GLK1(1)                                                                 --------->At5g28300                                                            ------>ZmHOX2a(2)                          ----------->RAV1(1)              <------ZmHOX2a(2)                       <------ZmHOX2a(2)                   --------->CCA1(2)                       --------->CCA1(2)                  --------->AGP1                      <---------ARR11(3)                  <-----------ARR10         --------->AHL20(1)                               --------->ARR11(3)         <---------AHL20(1)                     ----------->GT1 ----------->GT1        ------->TEIL         --------->AHL20(2)            --------->ARR14(2) <---------ARR11(3)        <---------ANAC55(1)         <---------AHL20(2)       ---------->DOF2         <---------ARR14(2)        --------->ANAC55(2) --->RAV1(1)          --------->ARR11(3)        --------->YAB1<---------LBD16       <---------ANAC55(2) >MYB46(3)            --------->ARR14(2)   <---------------------WRI1 <---------ARR11(3)     <------- -------->YAB1        --------->AGP1<---------TOE2(3)     --------->ARR14(2)        --------->ANAC55(1) --------ATHB12       <---------ARR14(2)<-------TEIL  ---------->DOF2 --------->ARR11(3)    ---------   aatcatcttattttattagtctaagatccaacaatataaaggttcttcgatggtaacaaagatctacggtaagaactccattgaatacgtatcagtgacc  9272300                                                    --------->ANAC58                            <---------DAG2          --------->ANAC58                ---------->DOF2                 --------->ANAC58                                <----             --------->ANAC58     ------>ZmHOX2a(1) ----------->GT1                      --------->ANAC46 --ZAT18     --------->ANAC58  ---------->ID1   --------->ANAC58                    --------->ARR11(3) -->HVH21  ---------->DOF2  <----------DOF2     --------->ANAC46            ----------->GT1    ------   tctaaaacagaacaaaagcaaagtctcaaacttttcctatttcaattctcaagcaagttataaaaccaaaaacccatgaagaaaaacatctacgaaggtg  9272400                  <---------GLK1(2)        --------->ANAC58                  --------->ARR14(2)     ---------->DOF2                              <---------GLK1(2)                  <---------ARR14(2)   --------->YAB1                                 --------->ARR14(2)               --------->ANAC58       <---------ATHB12   --------->GLK1(1)            <---------ARR14(2)            <------ZmHOX2a(2)   --------->ARR11(3)   ==============================HOX2a_HOX2a          <------ZmHOX2a(1) <---------YAB1 --------->ANAC58                 <------ZmHOX2a(2) -----MYB46(3) --------->ANAC58 <---------ARR11(3)   <------ZmHOX2a(1)     --------->ARR11(3) --->ALFIN1--------->ARR11(3)  --------->GLK1(1)  <-----------RAV1(2)      <---------ARR11(3)   gatagaaccataggatcacgaattctcgttacgatatctaatcaaaagcaatgcaggagatttctatatgaaatgaagatcaaaacccgattttcttaag  9272500                                                                                        <----------DOF2                                                                           --------->ANAC58                       --------->CCA1(2)                 <---------YAB1    --------->ANAC58               --------->ATHB12            ---------->DOF2              ------>ZmHOX2a(1) <xxxxxxxxxx   agaagattaagaagaaacgattgagaaatgagaagagatagagattaaagctagggtttaccattgtttgattcctctagcaacgagaggctttgctgtg  9272600               --------->ANAC58     ---------->DOF2                               ----------->GT1               --------->ANAC58  <---------MYB59                                <---------At4g35610        --------->ZAT14    *TSS  --------->TOE2(3)                              --------->At4g35610        <---------ZAT14   <------NtERF2     <---------ARR11(3)             <---------O2   <---------YAB1      <---------LBD16     --------->REM1(1)               --------->O2   --------->TOE2(3) xxxxxxxxxxxxxxsmallRNA(fl3)<---------KAN4(2)       <----------ID1        ------>ZmHOX2a(1)         <   agattgtgagtgaagagaagcaagaggcggaatgacctaaatgcgacatcttataagacaaaaccctagaaaactcctcgtgggctgaaaaatgttaatg  9272700                                                       --------->GLK1(1)                                                     ------->GAMYB                                                    --------->ANAC58                 <---------AHL20(2)           --------->ANAC58             --------->AHL20(2)               --------->ANAC58                                <------             <---------YAB1                   --------->ANAC46                             ------>ZmHOX2a(1)             <---------AHL20(2)             --------->ZAT6                            ------>ZmHOX2a(1)     --------------->AGL15                  <---------ALFIN1                         <---------ALFIN1 ----------DOF2 <---------YAB1   <----------DOF2    --------->ANAC58               ------>ZmHOX2a(1)   ggctttactagttatattattaatgggcctatgggcttttacattcacactccaacgaaatccaattttctactgaaatggtctcctcctctcctcgttt  9272800                                                      --------->ARR11(3)                         <---------WRKY18(1)          <---------ARR11(3)              <----------DOF2               <---------HSFB2a(1)                --------------------->WRI1     <---------ANAC58               --------->HSFB2a(1)                <----------DOF2 <---------LBD16<---------ANAC58 ---MYB52(1)<------ZmHOX2a(1)            ----------->GT1------>ZmHOX2a(2) <----------DOF2         <--   gtctataatccataggaacatttctcttgaccatcttgatgcaatgttatttctttgatcttctcatctacgggttcttttttgcttcctttgtttcata  9272900                                                       --------->WOX13(1)                 --------->ZAT14               ------>MYB46(1)          --------->ATHB12                  <---------HSFB2a(2)  ------      --------->ZAT6                   --------->AHL20(1)            ------->TEIL         <---------ZAT14 --------->TOE1(3)                     <---------AHL20(2)            -------->P           <---------ZAT18 --------->TOE2(3)                     --------->AHL20(2)          ------>ZmHOX2a(2)      --------->ZAT18 ---------GT1  ------>MYB83            <---------AHL20(1)<---------ATHB12 --------->HSFB2a(2)  ------   taaccttaacagtgaccaacttcaaataaactttgctctattttattggttctgtttcaatcaatttgatctacctctggaccaatatcgagtgaactag  9273000                                                    <-------GAMYB                                                   ----------->GT1                                              <---------GLK1(1)                                              --------->CCA1(2)                                             --------->ARR14(2)                                             <---------ARR14(2)                                          <---------HSFB2a(2)              --------->ANAC55(2)         --------->HSFB2a(2)                ----------->GT1              <---------ANAC55(2)        <---------LBD16               <---------REM1(1)  --------->DAG2       ----------------------->TaNAC69(2)            <------MYB83 ---------->DOF2  --------->DAG2       <---------ARR14(2)       <---------AHL20(2)             ------ --->ANAC58   --------->ANAC58         --------->ARR14(2)   <----------DOF2 <------ZmHOX2a(1)  ====== --->ANAC58   --------->ANAC58     ------->TEIL    <---------MYB46(3)<------MYB46(1)           ------   ccataaagtagttgaaacgtaaggttgcaactctatgaacgtttctggatatgtggttaagactttttatttggtgaaggagtaaaatgtgtgtttggcc  9273100  Previous    Next  AGI:  At3g25520.1    Description:  ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome. Identical to 60S ribosomal protein L5-1 (ATL5) [Arabidopsis Thaliana] (GB:Q8LBI1;GB:Q940R7); similar to 60S ribosomal protein L5 (RPL5B) [Arabidopsis thaliana] (TAIR:AT5G39740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46314.1); similar to unknown [Populus trichocarpa] (GB:ABK95061.1); contains InterPro domain Ribosomal protein L5, eukaryotic; (InterPro:IPR005485); contains InterPro domain Ribosomal protein L18/L5; (InterPro:IPR005484) Range:  from: 9270524    to: 9272627    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g25530.1    Description:  ATGHBDH/GHBDH; 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating). similar to phosphogluconate dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT1G17650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78910.1); contains InterPro domain 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815); contains InterPro domain 3-hydroxyisobutyrate dehydrogenase-related, conserved site; (InterPro:IPR002204); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Dehydrogenase, multihelical; (InterPro:IPR013328); contains InterPro domain 6-phosphogluconate dehydrog Range:  from: 9273037    to: 9274852    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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